Wall clock time and date at job start Sun Mar 29 2020 22:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47196 * 2 1 4 4 C 1.50702 * 109.47353 * 120.00066 * 2 1 3 5 5 C 1.34513 * 125.78975 * 259.99929 * 4 2 1 6 6 C 1.41384 * 106.83673 * 180.02562 * 5 4 2 7 7 C 1.34506 * 106.84433 * 359.97438 * 6 5 4 8 8 O 1.34302 * 108.42261 * 0.26728 * 7 6 5 9 9 N 1.46494 * 109.47157 * 240.00386 * 2 1 3 10 10 C 1.36944 * 120.00558 * 119.99749 * 9 2 1 11 11 H 1.08001 * 119.99391 * 306.63466 * 10 9 2 12 12 C 1.38816 * 120.00034 * 126.62595 * 10 9 2 13 13 N 1.31611 * 119.99737 * 163.31832 * 12 10 9 14 14 Si 1.86794 * 120.00137 * 343.31377 * 12 10 9 15 15 H 1.48506 * 109.46921 * 92.67158 * 14 12 10 16 16 H 1.48496 * 109.47294 * 212.66862 * 14 12 10 17 17 H 1.48505 * 109.47287 * 332.67600 * 14 12 10 18 18 C 1.46505 * 119.99992 * 299.99709 * 9 2 1 19 19 C 1.53002 * 117.50170 * 182.87409 * 18 9 2 20 20 C 1.52996 * 117.49900 * 114.21351 * 18 9 2 21 21 H 1.09006 * 109.47196 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47148 * 299.99685 * 1 2 3 23 23 H 1.08997 * 109.47602 * 59.99414 * 1 2 3 24 24 H 1.07993 * 126.57961 * 0.02562 * 5 4 2 25 25 H 1.08004 * 126.57819 * 180.02562 * 6 5 4 26 26 H 1.07997 * 125.79006 * 179.97438 * 7 6 5 27 27 H 0.96996 * 120.00354 * 180.02562 * 13 12 10 28 28 H 1.09004 * 115.54966 * 328.54453 * 18 9 2 29 29 H 1.09007 * 117.49825 * 359.97438 * 19 18 9 30 30 H 1.08990 * 117.50100 * 145.02174 * 19 18 9 31 31 H 1.09001 * 117.50157 * 214.98379 * 20 18 9 32 32 H 1.09005 * 117.49923 * 0.02562 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.4732 -0.1191 2.3553 6 6 2.8444 -1.1544 3.2438 7 6 2.6076 -2.3163 2.6090 8 8 2.1210 -2.0413 1.3878 9 7 2.0183 -0.6905 -1.1962 10 6 2.8055 -0.0250 -2.0976 11 1 2.4735 0.9145 -2.5142 12 6 4.0303 -0.5579 -2.4758 13 7 4.6340 -0.1160 -3.5586 14 14 4.8216 -1.9018 -1.4477 15 1 4.4241 -3.2303 -1.9792 16 1 6.2991 -1.7663 -1.5085 17 1 4.3705 -1.7774 -0.0383 18 6 1.6644 -2.0931 -1.4281 19 6 2.2600 -2.7777 -2.6600 20 6 0.7750 -2.4075 -2.6326 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 2.5323 0.9427 2.5436 25 1 3.2411 -1.0351 4.2412 26 1 2.7837 -3.3030 3.0111 27 1 5.4896 -0.4886 -3.8231 28 1 1.5300 -2.6985 -0.5316 29 1 2.9149 -2.1843 -3.2982 30 1 2.5171 -3.8334 -2.5741 31 1 0.0557 -3.2198 -2.5288 32 1 0.4535 -1.5707 -3.2529 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610663332.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:41 Heat of formation + Delta-G solvation = 69.052271 kcal Electronic energy + Delta-G solvation = -15762.610732 eV Core-core repulsion = 13305.970292 eV Total energy + Delta-G solvation = -2456.640440 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.97028 -37.47398 -34.05071 -32.39516 -32.21510 -29.50800 -27.86372 -24.15713 -22.63104 -21.59199 -21.10161 -20.34471 -19.21310 -16.91544 -16.59477 -15.58224 -15.17592 -14.63910 -14.12673 -13.33605 -13.08983 -12.85029 -12.37177 -12.26490 -12.21263 -11.95322 -11.51101 -11.13951 -10.75602 -10.61498 -10.45472 -10.29208 -9.76320 -9.46933 -9.38724 -9.06023 -8.43135 -7.86044 -6.58230 -6.06672 -3.73186 2.33696 3.14513 3.41224 3.49104 3.61531 3.66485 4.53204 4.83771 4.90627 5.16043 5.36680 5.49736 5.55515 5.86827 5.96118 5.97878 6.08476 6.17114 6.27180 6.28566 6.39549 6.54043 6.54984 6.61604 6.71345 6.85342 7.03891 7.09122 7.33859 7.74329 8.04849 8.43674 8.94626 9.59226 10.07000 11.02978 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026541 B = 0.013901 C = 0.012186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.726058 B = 2013.714304 C = 2297.172814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.240 3.760 3 H 0.102 0.898 4 C 0.019 3.981 5 C -0.240 4.240 6 C -0.213 4.213 7 C -0.071 4.071 8 O -0.166 6.166 9 N -0.561 5.561 10 C -0.291 4.291 11 H 0.075 0.925 12 C 0.061 3.939 13 N -0.894 5.894 14 Si 0.879 3.121 15 H -0.270 1.270 16 H -0.307 1.307 17 H -0.261 1.261 18 C 0.113 3.887 19 C -0.201 4.201 20 C -0.211 4.211 21 H 0.053 0.947 22 H 0.049 0.951 23 H 0.064 0.936 24 H 0.141 0.859 25 H 0.138 0.862 26 H 0.190 0.810 27 H 0.266 0.734 28 H 0.097 0.903 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.664 -3.363 9.504 11.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.133 3.867 3 H 0.120 0.880 4 C -0.034 4.034 5 C -0.260 4.260 6 C -0.232 4.232 7 C -0.139 4.139 8 O -0.061 6.061 9 N -0.279 5.279 10 C -0.419 4.419 11 H 0.092 0.908 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.235 1.235 17 H -0.185 1.185 18 C 0.005 3.995 19 C -0.239 4.239 20 C -0.252 4.252 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.083 0.917 24 H 0.159 0.841 25 H 0.156 0.844 26 H 0.207 0.793 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.138 0.862 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.579 -3.545 9.148 11.286 hybrid contribution 0.872 -0.767 0.738 1.376 sum -4.707 -4.311 9.886 11.768 Atomic orbital electron populations 1.22233 0.96191 1.01880 1.01088 1.19548 0.92515 0.94684 0.79963 0.87996 1.24171 1.00855 0.80135 0.98277 1.21487 1.09634 1.00100 0.94814 1.21670 1.07564 0.92649 1.01324 1.23861 1.05388 0.99889 0.84715 1.84116 1.64648 1.25446 1.31883 1.43646 1.56859 1.07389 1.20011 1.18607 0.97209 1.07356 1.18721 0.90761 1.25828 0.95706 0.97207 0.95513 1.69863 1.17106 1.43676 1.22580 0.86911 0.76793 0.82748 0.82877 1.19557 1.23470 1.18537 1.21329 1.00772 0.86969 0.90385 1.23562 0.96919 0.99416 1.04015 1.23359 0.92844 1.02440 1.06510 0.92776 0.93226 0.91703 0.84117 0.84414 0.79289 0.92464 0.88582 0.86179 0.90815 0.91095 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.18 37.15 0.34 -2.26 16 2 C 0.24 4.82 3.18 -69.09 -0.22 4.60 16 3 H 0.10 2.03 7.88 -51.93 -0.41 1.62 16 4 C 0.02 0.37 5.93 -35.62 -0.21 0.16 16 5 C -0.24 -4.31 10.80 -39.70 -0.43 -4.74 16 6 C -0.21 -3.47 10.91 -39.70 -0.43 -3.90 16 7 C -0.07 -1.18 12.09 29.41 0.36 -0.82 16 8 O -0.17 -3.29 7.97 5.70 0.05 -3.25 16 9 N -0.56 -13.13 1.97 -159.45 -0.31 -13.44 16 10 C -0.29 -7.90 9.15 -15.05 -0.14 -8.04 16 11 H 0.07 2.19 8.06 -52.49 -0.42 1.76 16 12 C 0.06 1.72 3.66 -17.43 -0.06 1.65 16 13 N -0.89 -26.60 13.97 55.49 0.78 -25.82 16 14 Si 0.88 22.62 24.78 -169.99 -4.21 18.41 16 15 H -0.27 -6.67 5.65 56.52 0.32 -6.35 16 16 H -0.31 -8.10 7.11 56.52 0.40 -7.70 16 17 H -0.26 -6.85 6.77 56.52 0.38 -6.47 16 18 C 0.11 2.49 3.89 -67.93 -0.26 2.23 16 19 C -0.20 -4.57 6.59 -26.69 -0.18 -4.74 16 20 C -0.21 -4.31 10.37 -26.70 -0.28 -4.58 16 21 H 0.05 0.92 7.67 -51.93 -0.40 0.52 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.14 2.22 8.06 -52.49 -0.42 1.79 16 25 H 0.14 1.82 8.06 -52.48 -0.42 1.40 16 26 H 0.19 2.34 8.06 -52.49 -0.42 1.92 16 27 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.10 2.06 5.92 -51.93 -0.31 1.76 16 29 H 0.12 3.13 4.95 -51.93 -0.26 2.87 16 30 H 0.07 1.55 7.76 -51.93 -0.40 1.15 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 LS Contribution 261.27 15.07 3.94 3.94 Total: -1.00 -30.17 261.27 -5.68 -35.85 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.39 Total: 4.75 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -1.51 Total: -20.44 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.46 Total: -39.26 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: 0.05 Total: -3.25 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.21 Total: 18.41 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.17 -5.68 -35.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610663332.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.903 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds