Wall clock time and date at job start Sun Mar 29 2020 22:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47196 * 2 1 4 4 C 1.50702 * 109.47353 * 120.00066 * 2 1 3 5 5 C 1.34513 * 125.78975 * 259.99929 * 4 2 1 6 6 C 1.41384 * 106.83673 * 180.02562 * 5 4 2 7 7 C 1.34506 * 106.84433 * 359.97438 * 6 5 4 8 8 O 1.34302 * 108.42261 * 0.26728 * 7 6 5 9 9 N 1.46494 * 109.47157 * 240.00386 * 2 1 3 10 10 C 1.36944 * 120.00558 * 119.99749 * 9 2 1 11 11 H 1.08001 * 119.99391 * 306.63466 * 10 9 2 12 12 C 1.38816 * 120.00034 * 126.62595 * 10 9 2 13 13 N 1.31611 * 119.99737 * 163.31832 * 12 10 9 14 14 Si 1.86794 * 120.00137 * 343.31377 * 12 10 9 15 15 H 1.48506 * 109.46921 * 92.67158 * 14 12 10 16 16 H 1.48496 * 109.47294 * 212.66862 * 14 12 10 17 17 H 1.48505 * 109.47287 * 332.67600 * 14 12 10 18 18 C 1.46505 * 119.99992 * 299.99709 * 9 2 1 19 19 C 1.53002 * 117.50170 * 182.87409 * 18 9 2 20 20 C 1.52996 * 117.49900 * 114.21351 * 18 9 2 21 21 H 1.09006 * 109.47196 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47148 * 299.99685 * 1 2 3 23 23 H 1.08997 * 109.47602 * 59.99414 * 1 2 3 24 24 H 1.07993 * 126.57961 * 0.02562 * 5 4 2 25 25 H 1.08004 * 126.57819 * 180.02562 * 6 5 4 26 26 H 1.07997 * 125.79006 * 179.97438 * 7 6 5 27 27 H 0.96996 * 120.00354 * 180.02562 * 13 12 10 28 28 H 1.09004 * 115.54966 * 328.54453 * 18 9 2 29 29 H 1.09007 * 117.49825 * 359.97438 * 19 18 9 30 30 H 1.08990 * 117.50100 * 145.02174 * 19 18 9 31 31 H 1.09001 * 117.50157 * 214.98379 * 20 18 9 32 32 H 1.09005 * 117.49923 * 0.02562 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.4732 -0.1191 2.3553 6 6 2.8444 -1.1544 3.2438 7 6 2.6076 -2.3163 2.6090 8 8 2.1210 -2.0413 1.3878 9 7 2.0183 -0.6905 -1.1962 10 6 2.8055 -0.0250 -2.0976 11 1 2.4735 0.9145 -2.5142 12 6 4.0303 -0.5579 -2.4758 13 7 4.6340 -0.1160 -3.5586 14 14 4.8216 -1.9018 -1.4477 15 1 4.4241 -3.2303 -1.9792 16 1 6.2991 -1.7663 -1.5085 17 1 4.3705 -1.7774 -0.0383 18 6 1.6644 -2.0931 -1.4281 19 6 2.2600 -2.7777 -2.6600 20 6 0.7750 -2.4075 -2.6326 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 2.5323 0.9427 2.5436 25 1 3.2411 -1.0351 4.2412 26 1 2.7837 -3.3030 3.0111 27 1 5.4896 -0.4886 -3.8231 28 1 1.5300 -2.6985 -0.5316 29 1 2.9149 -2.1843 -3.2982 30 1 2.5171 -3.8334 -2.5741 31 1 0.0557 -3.2198 -2.5288 32 1 0.4535 -1.5707 -3.2529 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610663332.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:41 Heat of formation + Delta-G solvation = 50.979771 kcal Electronic energy + Delta-G solvation = -15763.394414 eV Core-core repulsion = 13305.970292 eV Total energy + Delta-G solvation = -2457.424122 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.32864 -39.23485 -35.65310 -34.34214 -33.70048 -31.25806 -29.22279 -26.10684 -24.12829 -23.30308 -22.49500 -21.96617 -20.76986 -18.90106 -18.02744 -17.08945 -16.81318 -16.50979 -15.66030 -15.24830 -14.71925 -14.58460 -13.94445 -13.69859 -13.60676 -13.41710 -13.23757 -12.88127 -12.45886 -12.33875 -12.15158 -12.04050 -11.82202 -11.29514 -10.86209 -10.70797 -10.49753 -9.22002 -8.49490 -8.21592 -5.87440 0.98672 1.37058 1.40413 1.57493 1.83483 2.28964 2.42872 2.97115 3.15159 3.34781 3.91872 4.22573 4.24844 4.29944 4.34348 4.42697 4.52348 4.63732 4.86787 4.90170 4.96262 5.00038 5.11750 5.16163 5.28146 5.36157 5.48780 5.53922 5.75720 5.94103 6.23095 6.40534 7.03520 7.52643 8.04601 8.89689 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026541 B = 0.013901 C = 0.012186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.726058 B = 2013.714304 C = 2297.172814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.236 3.764 3 H 0.092 0.908 4 C -0.013 4.013 5 C -0.241 4.241 6 C -0.220 4.220 7 C -0.071 4.071 8 O -0.187 6.187 9 N -0.572 5.572 10 C -0.277 4.277 11 H 0.038 0.962 12 C 0.021 3.979 13 N -0.939 5.939 14 Si 0.934 3.066 15 H -0.254 1.254 16 H -0.319 1.319 17 H -0.264 1.264 18 C 0.108 3.892 19 C -0.218 4.218 20 C -0.188 4.188 21 H 0.054 0.946 22 H 0.075 0.925 23 H 0.059 0.941 24 H 0.155 0.845 25 H 0.169 0.831 26 H 0.229 0.771 27 H 0.265 0.735 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.568 -4.949 11.802 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.129 3.871 3 H 0.110 0.890 4 C -0.066 4.066 5 C -0.261 4.261 6 C -0.239 4.239 7 C -0.137 4.137 8 O -0.083 6.083 9 N -0.292 5.292 10 C -0.406 4.406 11 H 0.056 0.944 12 C -0.178 4.178 13 N -0.580 5.580 14 Si 0.762 3.238 15 H -0.179 1.179 16 H -0.248 1.248 17 H -0.188 1.188 18 C 0.001 3.999 19 C -0.256 4.256 20 C -0.228 4.228 21 H 0.073 0.927 22 H 0.094 0.906 23 H 0.078 0.922 24 H 0.173 0.827 25 H 0.187 0.813 26 H 0.246 0.754 27 H 0.074 0.926 28 H 0.128 0.872 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.127 0.873 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.518 -5.133 11.471 14.156 hybrid contribution 1.080 -0.229 0.092 1.108 sum -5.437 -5.362 11.563 13.857 Atomic orbital electron populations 1.22090 0.93664 1.02201 1.02111 1.19562 0.94332 0.93978 0.79195 0.89017 1.23892 1.03285 0.80667 0.98731 1.21856 1.08151 1.01398 0.94654 1.22076 1.07363 0.91927 1.02505 1.24741 1.03642 1.01879 0.83478 1.84057 1.65409 1.25303 1.33545 1.43686 1.56804 1.07893 1.20771 1.18403 0.97309 1.06146 1.18785 0.94409 1.26300 0.96198 0.99194 0.96144 1.69963 1.17745 1.45871 1.24396 0.86034 0.75007 0.81558 0.81195 1.17879 1.24794 1.18838 1.21445 1.01308 0.86181 0.90975 1.23481 0.98046 0.99954 1.04154 1.23349 0.92246 1.02705 1.04493 0.92694 0.90616 0.92230 0.82694 0.81343 0.75426 0.92625 0.87183 0.89778 0.88913 0.87315 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 9.18 71.98 0.66 -3.87 16 2 C 0.24 9.27 3.18 44.24 0.14 9.41 16 3 H 0.09 3.69 7.88 -2.38 -0.02 3.67 16 4 C -0.01 -0.50 5.93 24.83 0.15 -0.36 16 5 C -0.24 -8.02 10.80 22.19 0.24 -7.78 16 6 C -0.22 -6.34 10.91 22.19 0.24 -6.10 16 7 C -0.07 -2.07 12.09 66.97 0.81 -1.26 16 8 O -0.19 -6.90 7.97 -2.53 -0.02 -6.92 16 9 N -0.57 -26.62 1.97 -658.38 -1.30 -27.92 16 10 C -0.28 -15.46 9.15 84.03 0.77 -14.69 16 11 H 0.04 2.35 8.06 -2.91 -0.02 2.33 16 12 C 0.02 1.21 3.66 84.86 0.31 1.52 16 13 N -0.94 -57.74 13.97 21.65 0.30 -57.43 16 14 Si 0.93 47.20 24.78 68.60 1.70 48.90 16 15 H -0.25 -12.02 5.65 99.48 0.56 -11.46 16 16 H -0.32 -16.57 7.11 99.48 0.71 -15.86 16 17 H -0.26 -13.35 6.77 99.48 0.67 -12.68 16 18 C 0.11 4.58 3.89 44.99 0.18 4.75 16 19 C -0.22 -9.62 6.59 30.62 0.20 -9.42 16 20 C -0.19 -7.29 10.37 30.62 0.32 -6.97 16 21 H 0.05 1.73 7.67 -2.38 -0.02 1.71 16 22 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 23 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.16 4.53 8.06 -2.91 -0.02 4.51 16 25 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 26 H 0.23 4.52 8.06 -2.91 -0.02 4.50 16 27 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.11 4.43 5.92 -2.39 -0.01 4.41 16 29 H 0.08 4.40 4.95 -2.38 -0.01 4.39 16 30 H 0.09 3.68 7.76 -2.39 -0.02 3.66 16 31 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.07 3.11 8.14 -2.38 -0.02 3.09 16 Total: -1.00 -65.77 261.27 5.62 -60.15 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.92 Total: 17.99 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 4.01 Total: -34.76 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -1.00 Total: -85.35 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.02 Total: -6.92 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.70 Total: 48.90 kcal Total: -65.77 5.62 -60.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610663332.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.131 kcal (2) G-P(sol) polarization free energy of solvation -65.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds