Wall clock time and date at job start Sun Mar 29 2020 22:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48503 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47429 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47378 * 179.97438 * 10 9 7 12 12 C 1.46858 * 111.00097 * 169.99981 * 11 10 9 13 13 C 1.53550 * 109.86187 * 51.43358 * 12 11 10 14 14 C 1.50939 * 107.63793 * 49.77709 * 13 12 11 15 15 C 1.34298 * 129.19559 * 164.15697 * 14 13 12 16 16 N 1.35281 * 107.57496 * 180.17162 * 15 14 13 17 17 H 0.96999 * 125.99959 * 179.97438 * 16 15 14 18 18 N 1.40382 * 108.00676 * 359.96225 * 16 15 14 19 19 C 1.29909 * 108.12196 * 359.93658 * 18 16 15 20 20 C 1.47304 * 110.99831 * 294.91212 * 11 10 9 21 21 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 23 23 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 24 24 H 1.09004 * 109.46862 * 60.00067 * 10 9 7 25 25 H 1.09000 * 109.47250 * 300.00090 * 10 9 7 26 26 H 1.08998 * 109.40860 * 171.54850 * 12 11 10 27 27 H 1.08997 * 109.40811 * 291.31786 * 12 11 10 28 28 H 1.09001 * 109.82722 * 169.31394 * 13 12 11 29 29 H 1.09003 * 109.82781 * 290.17943 * 13 12 11 30 30 H 1.07997 * 126.21358 * 0.14507 * 15 14 13 31 31 H 1.08997 * 109.75180 * 47.22760 * 20 11 10 32 32 H 1.09007 * 109.74618 * 167.94933 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0027 11 7 1.5106 -4.9343 -0.0033 12 6 2.4167 -6.0650 -0.2423 13 6 3.6042 -5.9964 0.7287 14 6 3.0479 -5.8031 2.1185 15 6 3.6531 -5.9700 3.3057 16 7 2.7489 -5.6807 4.2694 17 1 2.9048 -5.7146 5.2262 18 7 1.5453 -5.3226 3.6418 19 6 1.7230 -5.3935 2.3568 20 6 0.7455 -5.1025 1.2442 21 1 -0.4851 0.8400 0.0004 22 1 0.6247 -2.5563 -0.8920 23 1 0.6240 -2.5576 0.8880 24 1 2.8718 -3.6051 0.8873 25 1 2.8718 -3.6035 -0.8927 26 1 1.8775 -6.9999 -0.0893 27 1 2.7845 -6.0240 -1.2675 28 1 4.1727 -6.9253 0.6839 29 1 4.2477 -5.1564 0.4670 30 1 4.6759 -6.2794 3.4626 31 1 0.1968 -4.1873 1.4660 32 1 0.0486 -5.9342 1.1394 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611008796.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:56 Heat of formation + Delta-G solvation = 74.716489 kcal Electronic energy + Delta-G solvation = -15081.439874 eV Core-core repulsion = 12657.337804 eV Total energy + Delta-G solvation = -2424.102070 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.30280 -37.73020 -33.28457 -32.02698 -31.35789 -29.41864 -28.31361 -25.60999 -24.13150 -21.95974 -20.90740 -20.42888 -18.10358 -17.41121 -16.35613 -15.06157 -14.90487 -14.76949 -14.31595 -14.03404 -13.26646 -13.19140 -12.67449 -12.13799 -11.91400 -11.80940 -11.34065 -11.23071 -10.86069 -10.75640 -10.52582 -10.20935 -9.76476 -9.33090 -9.11850 -9.06054 -8.29488 -8.20737 -7.76350 -5.93609 -3.95383 2.09889 2.96939 3.04358 3.36766 3.40937 3.43261 4.43671 4.61241 4.77408 4.91349 5.31835 5.40116 5.42103 5.58555 5.77121 5.87942 5.92134 6.09218 6.21127 6.26059 6.32969 6.51545 6.60109 6.86339 7.05763 7.40899 7.52741 7.58913 7.85141 7.92045 7.97867 8.14661 8.50255 9.11329 9.67489 11.17843 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033095 B = 0.007600 C = 0.007158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.839827 B = 3683.445963 C = 3910.647444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.520 4.520 8 H 0.052 0.948 9 C 0.027 3.973 10 C 0.059 3.941 11 N -0.526 5.526 12 C 0.056 3.944 13 C -0.076 4.076 14 C -0.234 4.234 15 C 0.055 3.945 16 N -0.493 5.493 17 H 0.435 0.565 18 N -0.283 5.283 19 C 0.062 3.938 20 C 0.129 3.871 21 H 0.260 0.740 22 H 0.025 0.975 23 H 0.017 0.983 24 H 0.029 0.971 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.171 0.829 31 H 0.107 0.893 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.895 -13.426 4.409 15.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.559 4.559 8 H 0.070 0.930 9 C -0.010 4.010 10 C -0.068 4.068 11 N -0.247 5.247 12 C -0.073 4.073 13 C -0.116 4.116 14 C -0.246 4.246 15 C -0.090 4.090 16 N -0.202 5.202 17 H 0.278 0.722 18 N -0.105 5.105 19 C -0.110 4.110 20 C -0.002 4.002 21 H 0.070 0.930 22 H 0.043 0.957 23 H 0.035 0.965 24 H 0.047 0.953 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.188 0.812 31 H 0.125 0.875 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.588 -13.028 4.916 15.004 hybrid contribution 1.938 0.758 0.772 2.220 sum 7.527 -12.271 5.687 15.478 Atomic orbital electron populations 1.69957 1.05959 1.26597 1.50689 1.24978 0.94820 0.99063 0.95419 0.86687 0.79604 0.83345 0.78513 1.20230 1.21273 1.20433 1.21138 0.92876 0.91107 1.50754 0.92979 1.19118 0.94033 0.90206 0.97685 1.22378 0.97007 0.88074 0.99300 1.62468 1.27469 1.03236 1.31555 1.22206 0.92145 0.94532 0.98425 1.20656 0.98811 1.01548 0.90618 1.20069 0.95162 1.13704 0.95670 1.21849 0.96142 1.02142 0.88854 1.46388 1.08673 1.56578 1.08537 0.72213 1.76960 1.03609 1.22172 1.07719 1.23510 0.96795 0.97524 0.93143 1.20969 0.93145 1.03386 0.82687 0.92989 0.95697 0.96485 0.95296 0.92058 0.91362 0.90428 0.91380 0.90853 0.81152 0.87474 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.32 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.71 4.91 -27.89 -0.14 0.58 16 10 C 0.06 1.27 3.89 -3.82 -0.01 1.25 16 11 N -0.53 -9.66 4.93 -235.25 -1.16 -10.82 16 12 C 0.06 0.81 5.91 -3.56 -0.02 0.79 16 13 C -0.08 -1.05 5.73 -27.48 -0.16 -1.20 16 14 C -0.23 -3.64 5.17 -104.96 -0.54 -4.19 16 15 C 0.06 0.71 11.96 -17.42 -0.21 0.51 16 16 N -0.49 -6.76 7.38 30.32 0.22 -6.53 16 17 H 0.43 4.28 8.96 -182.38 -1.63 2.64 16 18 N -0.28 -5.05 12.67 33.76 0.43 -4.63 16 19 C 0.06 1.11 6.59 -82.35 -0.54 0.57 16 20 C 0.13 2.33 6.05 -4.64 -0.03 2.30 16 21 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 22 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.02 0.48 6.30 -51.93 -0.33 0.15 16 24 H 0.03 0.64 5.96 -51.93 -0.31 0.34 16 25 H 0.06 1.29 8.08 -51.93 -0.42 0.87 16 26 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.07 7.22 -51.93 -0.37 0.69 16 30 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.11 2.20 5.99 -51.93 -0.31 1.89 16 32 H 0.09 1.39 8.14 -51.92 -0.42 0.97 16 LS Contribution 261.13 15.07 3.94 3.94 Total: -1.00 -33.11 261.13 -8.37 -41.48 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -5.45 Total: -0.78 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -2.06 Total: -13.15 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.23 Total: -48.56 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.11 -8.37 -41.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611008796.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.194 kcal (2) G-P(sol) polarization free energy of solvation -33.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds