Wall clock time and date at job start Sun Mar 29 2020 22:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99794 * 2 1 4 4 H 1.48500 * 109.46754 * 239.99907 * 3 2 1 5 5 H 1.48504 * 109.46795 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46857 * 120.00040 * 3 2 1 7 7 C 1.38812 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99438 * 160.28581 * 7 2 1 9 9 N 1.36932 * 119.99814 * 340.28784 * 7 2 1 10 10 C 1.46494 * 120.00146 * 320.53034 * 9 7 2 11 11 C 1.53001 * 109.47101 * 269.99899 * 10 9 7 12 12 N 1.46503 * 109.46939 * 180.02562 * 11 10 9 13 13 C 1.36881 * 126.39857 * 90.00639 * 12 11 10 14 14 C 1.34667 * 106.81647 * 180.02562 * 13 12 11 15 15 N 1.34126 * 108.02569 * 359.97438 * 14 13 12 16 16 C 1.30503 * 109.25066 * 359.72700 * 15 14 13 17 17 C 1.46507 * 119.99577 * 140.53389 * 9 7 2 18 18 C 1.52992 * 117.50080 * 3.28653 * 17 9 7 19 19 C 1.52995 * 117.50076 * 294.66092 * 17 9 7 20 20 H 0.97003 * 120.00552 * 355.00911 * 1 2 3 21 21 H 1.09006 * 109.47189 * 150.00490 * 10 9 7 22 22 H 1.08996 * 109.47253 * 30.00390 * 10 9 7 23 23 H 1.08992 * 109.47490 * 299.99847 * 11 10 9 24 24 H 1.09000 * 109.46678 * 60.00680 * 11 10 9 25 25 H 1.08000 * 126.58878 * 0.02844 * 13 12 11 26 26 H 1.08008 * 125.98572 * 179.97438 * 14 13 12 27 27 H 1.08000 * 125.64874 * 180.29671 * 16 15 14 28 28 H 1.09003 * 115.54594 * 148.99654 * 17 9 7 29 29 H 1.09004 * 117.49937 * 359.97438 * 18 17 9 30 30 H 1.08998 * 117.50088 * 145.02118 * 18 17 9 31 31 H 1.08999 * 117.50111 * 214.98129 * 19 17 9 32 32 H 1.09006 * 117.49645 * 359.97438 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0428 -1.2296 -0.3150 9 7 1.3858 -2.3531 0.4010 10 6 0.4640 -2.3283 1.5393 11 6 1.2392 -2.6034 2.8294 12 7 0.3172 -2.5792 3.9677 13 6 -0.3734 -3.6460 4.4764 14 6 -1.0988 -3.1824 5.5120 15 7 -0.8574 -1.8686 5.6328 16 6 -0.0053 -1.5015 4.7149 17 6 1.6396 -3.6093 -0.3089 18 6 2.6700 -3.5860 -1.4395 19 6 1.1797 -3.7032 -1.7650 20 1 -0.4851 0.8368 0.0731 21 1 -0.3004 -3.0936 1.4046 22 1 -0.0098 -1.3487 1.6020 23 1 1.7129 -3.5830 2.7668 24 1 2.0035 -1.8380 2.9642 25 1 -0.3424 -4.6637 4.1164 26 1 -1.7593 -3.7663 6.1360 27 1 0.3763 -0.5011 4.5743 28 1 1.5778 -4.5128 0.2977 29 1 3.1589 -2.6360 -1.6555 30 1 3.2866 -4.4743 -1.5769 31 1 0.8157 -4.6686 -2.1166 32 1 0.6879 -2.8305 -2.1948 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611224882.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:00 Heat of formation + Delta-G solvation = 109.260983 kcal Electronic energy + Delta-G solvation = -14966.560786 eV Core-core repulsion = 12543.956678 eV Total energy + Delta-G solvation = -2422.604108 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.50698 -37.23076 -34.50721 -32.96228 -30.75933 -29.02058 -27.55096 -24.61172 -22.42500 -21.43642 -20.84083 -20.37960 -19.81965 -16.85802 -16.46607 -15.55544 -14.77561 -14.53344 -14.18900 -13.81485 -13.43112 -12.93921 -12.70824 -12.64257 -12.21472 -11.65984 -11.19442 -10.97053 -10.83171 -10.41750 -10.37682 -9.94250 -9.74363 -9.57750 -9.42432 -9.07757 -8.63623 -8.08749 -6.72518 -5.95869 -3.64874 2.55434 3.24517 3.32150 3.33278 3.37447 3.59771 4.30871 4.81647 5.09058 5.15150 5.16580 5.34948 5.44585 5.78181 5.81644 5.89642 6.04747 6.06984 6.08974 6.18620 6.39998 6.52168 6.55559 6.86323 6.92940 7.13430 7.15744 7.36925 7.64159 7.69312 8.31315 8.51415 8.95505 9.56071 10.14005 10.99595 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.010061 C = 0.007540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.581692 B = 2782.482222 C = 3712.401424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.019 3.981 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.280 1.280 7 C -0.273 4.273 8 H 0.067 0.933 9 N -0.547 5.547 10 C 0.141 3.859 11 C 0.079 3.921 12 N -0.441 5.441 13 C -0.060 4.060 14 C -0.044 4.044 15 N -0.509 5.509 16 C 0.183 3.817 17 C 0.116 3.884 18 C -0.193 4.193 19 C -0.218 4.218 20 H 0.259 0.741 21 H 0.034 0.966 22 H 0.101 0.899 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.166 0.834 26 H 0.162 0.838 27 H 0.199 0.801 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.053 -6.217 3.862 7.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.184 4.184 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.402 4.402 8 H 0.085 0.915 9 N -0.264 5.264 10 C 0.014 3.986 11 C -0.045 4.045 12 N -0.121 5.121 13 C -0.195 4.195 14 C -0.193 4.193 15 N -0.228 5.228 16 C -0.100 4.100 17 C 0.007 3.993 18 C -0.231 4.231 19 C -0.259 4.259 20 H 0.069 0.931 21 H 0.052 0.948 22 H 0.119 0.881 23 H 0.092 0.908 24 H 0.110 0.890 25 H 0.184 0.816 26 H 0.179 0.821 27 H 0.216 0.784 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.680 -5.526 4.235 7.162 hybrid contribution 0.765 0.273 -0.813 1.149 sum 2.445 -5.253 3.422 6.729 Atomic orbital electron populations 1.70039 1.05602 1.26754 1.49494 1.25309 0.95020 0.99046 0.98978 0.86464 0.79273 0.83104 0.78540 1.20466 1.21378 1.20575 1.19020 0.93516 0.84890 1.42789 0.91537 1.43240 1.50976 1.03498 1.28659 1.21156 0.90842 1.03616 0.82996 1.23046 0.92631 1.03139 0.85728 1.45784 1.33589 1.08286 1.24479 1.22658 1.02100 0.94001 1.00735 1.22162 1.04665 0.91973 1.00459 1.70235 1.16111 1.12836 1.23569 1.24911 0.99376 0.94123 0.91560 1.21269 1.01104 0.90266 0.86652 1.23031 0.92211 1.01952 1.05918 1.23337 0.96872 1.01111 1.04611 0.93141 0.94795 0.88098 0.90796 0.89045 0.81635 0.82086 0.78418 0.89621 0.88367 0.90684 0.91151 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.89 11.50 55.49 0.64 -23.26 16 2 C 0.02 0.48 4.98 -17.43 -0.09 0.39 16 3 Si 0.90 20.25 29.60 -169.99 -5.03 15.22 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.27 -6.82 8.47 -15.06 -0.13 -6.94 16 8 H 0.07 1.67 6.75 -52.48 -0.35 1.31 16 9 N -0.55 -12.45 2.75 -165.67 -0.46 -12.91 16 10 C 0.14 3.02 5.66 -4.04 -0.02 3.00 16 11 C 0.08 1.39 6.48 -4.04 -0.03 1.37 16 12 N -0.44 -7.59 2.75 -118.58 -0.33 -7.92 16 13 C -0.06 -0.94 11.58 -16.56 -0.19 -1.13 16 14 C -0.04 -0.71 11.87 -17.81 -0.21 -0.92 16 15 N -0.51 -9.44 11.25 -14.66 -0.16 -9.61 16 16 C 0.18 3.26 12.56 -90.37 -1.14 2.12 16 17 C 0.12 2.31 6.56 -67.93 -0.45 1.87 16 18 C -0.19 -3.60 9.80 -26.74 -0.26 -3.86 16 19 C -0.22 -4.29 10.36 -26.74 -0.28 -4.56 16 20 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 21 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 22 H 0.10 2.50 5.59 -51.93 -0.29 2.21 16 23 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 24 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 25 H 0.17 2.10 8.06 -52.49 -0.42 1.67 16 26 H 0.16 2.12 8.06 -52.48 -0.42 1.70 16 27 H 0.20 3.12 8.06 -52.49 -0.42 2.70 16 28 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 29 H 0.10 2.01 6.46 -51.93 -0.34 1.67 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 275.70 15.07 4.15 4.15 Total: -1.00 -28.16 275.70 -8.31 -36.47 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -4.34 Total: 6.52 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -2.79 Total: -8.68 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.31 Total: -53.69 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.16 -8.31 -36.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611224882.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.731 kcal (2) G-P(sol) polarization free energy of solvation -28.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds