Wall clock time and date at job start Sun Mar 29 2020 21:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41383 * 126.57918 * 2 1 4 4 C 1.34506 * 106.84438 * 180.16566 * 3 2 1 5 5 O 1.34310 * 108.42012 * 359.62257 * 4 3 2 6 6 C 1.34306 * 109.47236 * 0.24190 * 5 4 3 7 7 C 1.50698 * 125.78818 * 180.02562 * 6 5 4 8 8 N 1.46511 * 109.47172 * 269.97874 * 7 6 5 9 9 C 1.36936 * 120.00030 * 89.99957 * 8 7 6 10 10 H 1.08001 * 119.99676 * 304.30590 * 9 8 7 11 11 C 1.38807 * 119.99883 * 124.30711 * 9 8 7 12 12 N 1.31621 * 119.99720 * 165.16201 * 11 9 8 13 13 Si 1.86797 * 120.00044 * 345.16049 * 11 9 8 14 14 H 1.48498 * 109.47283 * 92.35301 * 13 11 9 15 15 H 1.48501 * 109.46989 * 212.34950 * 13 11 9 16 16 H 1.48500 * 109.47329 * 332.35050 * 13 11 9 17 17 C 1.46497 * 119.99606 * 269.99948 * 8 7 6 18 18 C 1.52998 * 117.49533 * 183.07952 * 17 8 7 19 19 C 1.53001 * 60.00204 * 252.51240 * 18 17 8 20 20 H 1.08999 * 109.46607 * 270.24810 * 1 2 3 21 21 H 1.08990 * 109.47185 * 30.24890 * 1 2 3 22 22 H 1.08999 * 109.46677 * 150.25451 * 1 2 3 23 23 H 1.08004 * 126.58112 * 0.02615 * 3 2 1 24 24 H 1.08002 * 125.79623 * 179.88866 * 4 3 2 25 25 H 1.09003 * 109.47273 * 29.97182 * 7 6 5 26 26 H 1.09001 * 109.47340 * 149.97602 * 7 6 5 27 27 H 0.97002 * 119.99971 * 180.02562 * 12 11 9 28 28 H 1.09002 * 115.55278 * 328.78817 * 17 8 7 29 29 H 1.08998 * 117.50245 * 359.97438 * 18 17 8 30 30 H 1.09000 * 117.49536 * 145.02282 * 18 17 8 31 31 H 1.09003 * 117.50019 * 252.51540 * 19 18 17 32 32 H 1.08997 * 117.52279 * 107.48065 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6156 0.6812 -0.0037 5 8 3.5849 -0.6616 0.0024 6 6 2.3087 -1.0801 0.0048 7 6 1.8523 -2.5163 0.0120 8 7 1.7036 -2.9885 -1.3669 9 6 2.7644 -3.5683 -2.0102 10 1 3.7006 -3.0367 -2.0950 11 6 2.6362 -4.8393 -2.5533 12 7 3.5306 -5.2813 -3.4118 13 14 1.1945 -5.9223 -2.0657 14 1 0.0794 -5.7241 -3.0262 15 1 1.6164 -7.3460 -2.0841 16 1 0.7414 -5.5579 -0.6993 17 6 0.4201 -2.8403 -2.0575 18 6 0.3071 -3.4177 -3.4698 19 6 0.3722 -1.9028 -3.2657 20 1 -0.3632 0.0045 1.0277 21 1 -0.3633 0.8877 -0.5176 22 1 -0.3632 -0.8923 -0.5099 23 1 2.0367 2.1691 0.0004 24 1 4.5060 1.2924 -0.0064 25 1 2.5908 -3.1297 0.5284 26 1 0.8944 -2.5906 0.5268 27 1 3.4409 -6.1693 -3.7917 28 1 -0.4640 -2.8877 -1.4217 29 1 1.1878 -3.9074 -3.8853 30 1 -0.6516 -3.8452 -3.7634 31 1 -0.5438 -1.3336 -3.4250 32 1 1.2954 -1.3959 -3.5464 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611265103.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:42 Heat of formation + Delta-G solvation = 63.729833 kcal Electronic energy + Delta-G solvation = -15478.972921 eV Core-core repulsion = 13022.101683 eV Total energy + Delta-G solvation = -2456.871238 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.91147 -37.35062 -33.77990 -33.02803 -31.88864 -29.63282 -27.34155 -25.16936 -23.21004 -21.56108 -20.91393 -19.94244 -19.04450 -16.82743 -16.43677 -15.65083 -14.98385 -14.57204 -14.04398 -13.72514 -13.09923 -12.84272 -12.68558 -12.26431 -12.06403 -11.95866 -11.80333 -11.21022 -10.99009 -10.75360 -10.43557 -10.36795 -9.82304 -9.50785 -9.17116 -9.06910 -8.48563 -7.74603 -6.56088 -6.04450 -3.76102 2.37518 3.12070 3.37035 3.45965 3.52605 3.70968 4.49532 4.86299 4.91872 5.26068 5.32743 5.42118 5.58728 5.79541 5.86061 5.92759 6.00546 6.04925 6.11126 6.26461 6.37970 6.47367 6.51751 6.56815 6.58215 6.77991 7.02920 7.16406 7.30238 7.83363 8.06435 8.48916 8.94123 9.58817 10.04801 11.05170 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034342 B = 0.010748 C = 0.009592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.134084 B = 2604.556009 C = 2918.457396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.199 4.199 3 C -0.214 4.214 4 C -0.062 4.062 5 O -0.168 6.168 6 C 0.009 3.991 7 C 0.216 3.784 8 N -0.561 5.561 9 C -0.287 4.287 10 H 0.071 0.929 11 C 0.059 3.941 12 N -0.895 5.895 13 Si 0.886 3.114 14 H -0.269 1.269 15 H -0.303 1.303 16 H -0.269 1.269 17 C 0.107 3.893 18 C -0.197 4.197 19 C -0.207 4.207 20 H 0.055 0.945 21 H 0.056 0.944 22 H 0.067 0.933 23 H 0.136 0.864 24 H 0.191 0.809 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.266 0.734 28 H 0.089 0.911 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.040 8.181 6.090 11.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.202 4.202 3 C -0.233 4.233 4 C -0.131 4.131 5 O -0.062 6.062 6 C -0.045 4.045 7 C 0.089 3.911 8 N -0.279 5.279 9 C -0.416 4.416 10 H 0.089 0.911 11 C -0.144 4.144 12 N -0.533 5.533 13 Si 0.714 3.286 14 H -0.195 1.195 15 H -0.231 1.231 16 H -0.194 1.194 17 C 0.000 4.000 18 C -0.235 4.235 19 C -0.248 4.248 20 H 0.073 0.927 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.154 0.846 24 H 0.208 0.792 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.106 0.894 29 H 0.138 0.862 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.701 7.795 5.988 11.363 hybrid contribution -0.687 -0.156 -0.090 0.710 sum -6.388 7.639 5.898 11.573 Atomic orbital electron populations 1.20101 0.90068 1.02328 1.00787 1.20075 0.96681 0.92082 1.11331 1.21559 0.92953 0.99180 1.09623 1.23787 0.99166 0.81719 1.08386 1.84107 1.29774 1.21804 1.70536 1.24093 0.80047 0.98795 1.01519 1.19523 0.98926 0.84823 0.87812 1.43584 1.08609 1.67120 1.08602 1.18573 0.92547 0.96967 1.33528 0.91126 1.25832 0.96435 0.96603 0.95537 1.69865 1.36389 1.18878 1.28216 0.86771 0.83143 0.78585 0.80064 1.19509 1.23113 1.19401 1.21347 0.89335 1.02042 0.87295 1.23520 1.02793 0.96290 1.00896 1.23302 1.01163 0.92696 1.07617 0.92663 0.92519 0.91384 0.84618 0.79238 0.90657 0.90998 0.92434 0.89354 0.86230 0.90597 0.91046 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 9.99 36.01 0.36 -0.76 16 2 C -0.20 -3.54 6.16 -104.74 -0.65 -4.18 16 3 C -0.21 -3.47 10.87 -39.71 -0.43 -3.90 16 4 C -0.06 -1.03 12.09 29.41 0.36 -0.67 16 5 O -0.17 -3.41 10.65 5.68 0.06 -3.35 16 6 C 0.01 0.18 6.90 -35.63 -0.25 -0.06 16 7 C 0.22 4.40 5.86 -5.19 -0.03 4.37 16 8 N -0.56 -13.15 2.03 -167.02 -0.34 -13.49 16 9 C -0.29 -7.96 9.17 -15.06 -0.14 -8.10 16 10 H 0.07 2.22 8.06 -52.49 -0.42 1.79 16 11 C 0.06 1.65 3.76 -17.43 -0.07 1.58 16 12 N -0.90 -26.63 13.97 55.49 0.78 -25.86 16 13 Si 0.89 21.65 24.83 -169.99 -4.22 17.43 16 14 H -0.27 -6.27 5.81 56.52 0.33 -5.94 16 15 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 C 0.11 2.27 4.09 -67.93 -0.28 1.99 16 18 C -0.20 -4.31 6.68 -26.73 -0.18 -4.49 16 19 C -0.21 -4.21 10.36 -26.73 -0.28 -4.49 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.07 1.04 6.16 -51.93 -0.32 0.72 16 23 H 0.14 1.82 8.06 -52.48 -0.42 1.40 16 24 H 0.19 2.33 8.06 -52.49 -0.42 1.90 16 25 H 0.08 1.56 8.04 -51.93 -0.42 1.14 16 26 H 0.07 1.26 7.69 -51.93 -0.40 0.87 16 27 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.09 1.66 7.69 -51.93 -0.40 1.26 16 29 H 0.12 3.05 5.08 -51.93 -0.26 2.79 16 30 H 0.08 1.50 7.86 -51.93 -0.41 1.09 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 2.00 8.14 -51.93 -0.42 1.57 16 LS Contribution 265.02 15.07 3.99 3.99 Total: -1.00 -30.36 265.02 -5.68 -36.04 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -4.38 Total: 3.96 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -1.58 Total: -18.73 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.44 Total: -39.35 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: 0.06 Total: -3.35 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.22 Total: 17.43 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.36 -5.68 -36.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611265103.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.775 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds