Wall clock time and date at job start Sun Mar 29 2020 21:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41383 * 126.57918 * 2 1 4 4 C 1.34506 * 106.84438 * 180.16566 * 3 2 1 5 5 O 1.34310 * 108.42012 * 359.62257 * 4 3 2 6 6 C 1.34306 * 109.47236 * 0.24190 * 5 4 3 7 7 C 1.50698 * 125.78818 * 180.02562 * 6 5 4 8 8 N 1.46511 * 109.47172 * 269.97874 * 7 6 5 9 9 C 1.36936 * 120.00030 * 89.99957 * 8 7 6 10 10 H 1.08001 * 119.99676 * 304.30590 * 9 8 7 11 11 C 1.38807 * 119.99883 * 124.30711 * 9 8 7 12 12 N 1.31621 * 119.99720 * 165.16201 * 11 9 8 13 13 Si 1.86797 * 120.00044 * 345.16049 * 11 9 8 14 14 H 1.48498 * 109.47283 * 92.35301 * 13 11 9 15 15 H 1.48501 * 109.46989 * 212.34950 * 13 11 9 16 16 H 1.48500 * 109.47329 * 332.35050 * 13 11 9 17 17 C 1.46497 * 119.99606 * 269.99948 * 8 7 6 18 18 C 1.52998 * 117.49533 * 183.07952 * 17 8 7 19 19 C 1.53001 * 60.00204 * 252.51240 * 18 17 8 20 20 H 1.08999 * 109.46607 * 270.24810 * 1 2 3 21 21 H 1.08990 * 109.47185 * 30.24890 * 1 2 3 22 22 H 1.08999 * 109.46677 * 150.25451 * 1 2 3 23 23 H 1.08004 * 126.58112 * 0.02615 * 3 2 1 24 24 H 1.08002 * 125.79623 * 179.88866 * 4 3 2 25 25 H 1.09003 * 109.47273 * 29.97182 * 7 6 5 26 26 H 1.09001 * 109.47340 * 149.97602 * 7 6 5 27 27 H 0.97002 * 119.99971 * 180.02562 * 12 11 9 28 28 H 1.09002 * 115.55278 * 328.78817 * 17 8 7 29 29 H 1.08998 * 117.50245 * 359.97438 * 18 17 8 30 30 H 1.09000 * 117.49536 * 145.02282 * 18 17 8 31 31 H 1.09003 * 117.50019 * 252.51540 * 19 18 17 32 32 H 1.08997 * 117.52279 * 107.48065 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6156 0.6812 -0.0037 5 8 3.5849 -0.6616 0.0024 6 6 2.3087 -1.0801 0.0048 7 6 1.8523 -2.5163 0.0120 8 7 1.7036 -2.9885 -1.3669 9 6 2.7644 -3.5683 -2.0102 10 1 3.7006 -3.0367 -2.0950 11 6 2.6362 -4.8393 -2.5533 12 7 3.5306 -5.2813 -3.4118 13 14 1.1945 -5.9223 -2.0657 14 1 0.0794 -5.7241 -3.0262 15 1 1.6164 -7.3460 -2.0841 16 1 0.7414 -5.5579 -0.6993 17 6 0.4201 -2.8403 -2.0575 18 6 0.3071 -3.4177 -3.4698 19 6 0.3722 -1.9028 -3.2657 20 1 -0.3632 0.0045 1.0277 21 1 -0.3633 0.8877 -0.5176 22 1 -0.3632 -0.8923 -0.5099 23 1 2.0367 2.1691 0.0004 24 1 4.5060 1.2924 -0.0064 25 1 2.5908 -3.1297 0.5284 26 1 0.8944 -2.5906 0.5268 27 1 3.4409 -6.1693 -3.7917 28 1 -0.4640 -2.8877 -1.4217 29 1 1.1878 -3.9074 -3.8853 30 1 -0.6516 -3.8452 -3.7634 31 1 -0.5438 -1.3336 -3.4250 32 1 1.2954 -1.3959 -3.5464 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611265103.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:42 Heat of formation + Delta-G solvation = 44.879967 kcal Electronic energy + Delta-G solvation = -15479.790313 eV Core-core repulsion = 13022.101683 eV Total energy + Delta-G solvation = -2457.688630 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.29933 -39.09063 -35.25416 -34.72154 -33.82038 -31.10694 -28.77299 -26.87162 -24.92238 -23.24164 -22.31188 -21.66222 -20.49301 -18.78925 -17.87608 -17.19788 -16.68044 -16.36216 -15.60084 -15.36393 -14.91673 -14.31161 -13.93686 -13.77333 -13.61714 -13.54207 -13.14459 -12.98283 -12.59789 -12.40552 -12.13721 -12.02629 -11.79599 -11.29727 -10.89047 -10.53956 -10.36479 -9.16293 -8.45350 -8.16641 -5.92269 0.98162 1.44502 1.47444 1.60791 1.81311 2.39748 2.46918 2.99996 3.22780 3.37847 4.05589 4.16200 4.22364 4.24992 4.32702 4.44243 4.52186 4.73686 4.84464 4.91525 4.95128 4.97136 5.02756 5.15474 5.31074 5.34580 5.47982 5.55423 5.88777 5.96017 6.25163 6.47020 7.04615 7.51280 8.00852 8.94012 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034342 B = 0.010748 C = 0.009592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.134084 B = 2604.556009 C = 2918.457396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.190 4.190 3 C -0.220 4.220 4 C -0.067 4.067 5 O -0.205 6.205 6 C -0.036 4.036 7 C 0.216 3.784 8 N -0.572 5.572 9 C -0.281 4.281 10 H 0.010 0.990 11 C 0.013 3.987 12 N -0.947 5.947 13 Si 0.951 3.049 14 H -0.245 1.245 15 H -0.313 1.313 16 H -0.254 1.254 17 C 0.104 3.896 18 C -0.211 4.211 19 C -0.192 4.192 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.168 0.832 24 H 0.226 0.774 25 H 0.057 0.943 26 H 0.107 0.893 27 H 0.266 0.734 28 H 0.130 0.870 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.288 9.485 7.213 15.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.192 4.192 3 C -0.239 4.239 4 C -0.134 4.134 5 O -0.101 6.101 6 C -0.088 4.088 7 C 0.090 3.910 8 N -0.291 5.291 9 C -0.411 4.411 10 H 0.027 0.973 11 C -0.186 4.186 12 N -0.588 5.588 13 Si 0.776 3.224 14 H -0.169 1.169 15 H -0.242 1.242 16 H -0.177 1.177 17 C -0.002 4.002 18 C -0.249 4.249 19 C -0.232 4.232 20 H 0.096 0.904 21 H 0.091 0.909 22 H 0.084 0.916 23 H 0.186 0.814 24 H 0.242 0.758 25 H 0.075 0.925 26 H 0.125 0.875 27 H 0.075 0.925 28 H 0.147 0.853 29 H 0.095 0.905 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.974 9.136 7.131 14.657 hybrid contribution 0.441 -0.380 -0.446 0.733 sum -8.533 8.756 6.685 13.934 Atomic orbital electron populations 1.20211 0.87634 1.02973 1.02468 1.20568 0.98402 0.91632 1.08631 1.21986 0.92457 1.00410 1.09041 1.24645 1.01203 0.80571 1.06961 1.84065 1.30647 1.23925 1.71507 1.23977 0.80490 0.99112 1.05221 1.19591 1.00193 0.85072 0.86132 1.43636 1.08285 1.67415 1.09791 1.18172 0.92150 0.96898 1.33833 0.97264 1.26488 0.99394 0.97680 0.95021 1.70006 1.39247 1.19374 1.30131 0.85739 0.80281 0.75571 0.80790 1.16946 1.24212 1.17733 1.21672 0.89187 1.01877 0.87509 1.23455 1.02407 0.97310 1.01715 1.23222 1.01304 0.91983 1.06684 0.90404 0.90885 0.91645 0.81437 0.75806 0.92499 0.87497 0.92474 0.85281 0.90457 0.87627 0.86918 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 9.99 71.24 0.71 -1.21 16 2 C -0.19 -6.28 6.16 -19.94 -0.12 -6.40 16 3 C -0.22 -6.58 10.87 22.19 0.24 -6.34 16 4 C -0.07 -2.13 12.09 66.97 0.81 -1.32 16 5 O -0.20 -8.53 10.65 -2.58 -0.03 -8.56 16 6 C -0.04 -1.41 6.90 24.83 0.17 -1.24 16 7 C 0.22 8.67 5.86 85.63 0.50 9.17 16 8 N -0.57 -26.68 2.03 -682.32 -1.39 -28.07 16 9 C -0.28 -16.25 9.17 84.03 0.77 -15.48 16 10 H 0.01 0.66 8.06 -2.91 -0.02 0.64 16 11 C 0.01 0.73 3.76 84.86 0.32 1.05 16 12 N -0.95 -59.07 13.97 21.65 0.30 -58.77 16 13 Si 0.95 44.56 24.83 68.60 1.70 46.26 16 14 H -0.25 -10.46 5.81 99.48 0.58 -9.88 16 15 H -0.31 -15.12 7.11 99.48 0.71 -14.41 16 16 H -0.25 -11.15 7.11 99.48 0.71 -10.44 16 17 C 0.10 4.11 4.09 44.99 0.18 4.29 16 18 C -0.21 -8.79 6.68 30.59 0.20 -8.59 16 19 C -0.19 -7.36 10.36 30.60 0.32 -7.04 16 20 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 21 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.06 1.69 6.16 -2.39 -0.01 1.68 16 23 H 0.17 3.83 8.06 -2.91 -0.02 3.80 16 24 H 0.23 5.09 8.06 -2.91 -0.02 5.06 16 25 H 0.06 2.42 8.04 -2.39 -0.02 2.40 16 26 H 0.11 3.46 7.69 -2.39 -0.02 3.44 16 27 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 28 H 0.13 4.13 7.69 -2.39 -0.02 4.11 16 29 H 0.08 3.96 5.08 -2.39 -0.01 3.95 16 30 H 0.11 3.75 7.86 -2.39 -0.02 3.73 16 31 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 32 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -70.01 265.02 5.67 -64.34 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.97 Total: 17.88 kcal Atomic # 6 Polarization: -37.21 SS G_CDS: 4.11 Total: -33.10 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -1.08 Total: -86.83 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.03 Total: -8.56 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.70 Total: 46.26 kcal Total: -70.01 5.67 -64.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611265103.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.223 kcal (2) G-P(sol) polarization free energy of solvation -70.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds