Wall clock time and date at job start Sun Mar 29 2020 22:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30831 * 125.90010 * 2 1 4 4 N 1.40086 * 108.20813 * 180.25653 * 3 2 1 5 5 H 0.96999 * 126.03911 * 179.70166 * 4 3 2 6 6 C 1.34953 * 107.92151 * 359.72579 * 4 3 2 7 7 C 1.35315 * 107.74401 * 359.97438 * 6 4 3 8 8 C 1.50703 * 126.03803 * 180.02562 * 7 6 4 9 9 N 1.46500 * 109.47178 * 260.02371 * 8 7 6 10 10 C 1.36939 * 119.99713 * 89.99713 * 9 8 7 11 11 H 1.08003 * 119.99912 * 217.10407 * 10 9 8 12 12 C 1.38805 * 120.00215 * 36.82876 * 10 9 8 13 13 N 1.31619 * 120.00131 * 20.92878 * 12 10 9 14 14 Si 1.86804 * 120.00142 * 200.92768 * 12 10 9 15 15 H 1.48503 * 109.46906 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47236 * 119.99660 * 14 12 10 17 17 H 1.48492 * 109.47141 * 240.00167 * 14 12 10 18 18 C 1.46496 * 120.00247 * 270.00126 * 9 8 7 19 19 C 1.52990 * 117.50125 * 185.52416 * 18 9 8 20 20 C 1.52997 * 117.50209 * 116.86254 * 18 9 8 21 21 H 1.08995 * 109.47187 * 270.20708 * 1 2 3 22 22 H 1.08994 * 109.47034 * 30.21016 * 1 2 3 23 23 H 1.09001 * 109.47028 * 150.20573 * 1 2 3 24 24 H 1.07997 * 126.12587 * 179.97438 * 6 4 3 25 25 H 1.08994 * 109.47606 * 140.01824 * 8 7 6 26 26 H 1.09000 * 109.46996 * 20.02293 * 8 7 6 27 27 H 0.97006 * 120.00040 * 174.80563 * 13 12 10 28 28 H 1.09004 * 115.54677 * 331.19711 * 18 9 8 29 29 H 1.09003 * 117.50062 * 359.97438 * 19 18 9 30 30 H 1.09008 * 117.50030 * 145.01846 * 19 18 9 31 31 H 1.09003 * 117.49890 * 214.98261 * 20 18 9 32 32 H 1.09001 * 117.49609 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0060 5 1 4.3908 1.2079 -0.0114 6 6 3.6142 -0.7155 -0.0034 7 6 2.3271 -1.1330 0.0045 8 6 1.8599 -2.5657 0.0105 9 7 1.4736 -2.9590 -1.3469 10 6 2.4025 -3.5054 -2.1918 11 1 2.3825 -3.2649 -3.2445 12 6 3.3731 -4.3640 -1.6944 13 7 3.1827 -4.9779 -0.5458 14 14 4.9498 -4.6482 -2.6552 15 1 4.9189 -3.8470 -3.9052 16 1 6.1134 -4.2349 -1.8304 17 1 5.0699 -6.0889 -2.9941 18 6 0.0938 -2.7677 -1.8003 19 6 -0.2790 -3.3153 -3.1794 20 6 -0.1395 -1.8059 -2.9671 21 1 -0.3633 0.0037 1.0276 22 1 -0.3633 0.8880 -0.5171 23 1 -0.3633 -0.8918 -0.5106 24 1 4.4891 -1.3487 -0.0070 25 1 1.0022 -2.6655 0.6756 26 1 2.6670 -3.2097 0.3595 27 1 3.8253 -5.6345 -0.2344 28 1 -0.6670 -2.8070 -1.0207 29 1 0.5025 -3.8177 -3.7495 30 1 -1.2852 -3.7147 -3.3072 31 1 -1.0539 -1.2127 -2.9552 32 1 0.7336 -1.3151 -3.3970 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611265114.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:40 Heat of formation + Delta-G solvation = 120.167596 kcal Electronic energy + Delta-G solvation = -15443.649253 eV Core-core repulsion = 13021.518091 eV Total energy + Delta-G solvation = -2422.131162 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.43938 -36.95282 -33.59591 -32.32764 -30.95864 -29.00841 -27.28831 -25.33810 -23.22187 -21.32775 -20.32145 -19.77498 -18.75651 -17.18381 -15.97518 -15.40902 -14.47319 -14.10216 -13.92048 -13.49598 -12.86697 -12.37686 -12.32620 -12.17202 -11.86682 -11.34451 -11.16090 -10.82922 -10.67183 -10.57996 -10.44127 -10.02072 -9.62898 -9.51244 -9.23780 -8.66468 -8.42792 -7.64078 -6.45725 -5.81574 -3.35078 2.59225 3.29410 3.39774 3.43106 3.52286 3.55140 4.43910 4.98750 5.32955 5.41453 5.44736 5.59409 5.90115 5.95971 6.08450 6.13286 6.24377 6.34081 6.42690 6.52796 6.59610 6.69443 6.77484 7.03843 7.14938 7.19186 7.42852 7.70739 7.83574 7.95833 8.38586 8.53326 9.18323 9.81299 10.38622 11.19656 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022728 B = 0.013184 C = 0.009712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.669374 B = 2123.325717 C = 2882.376837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.083 3.917 3 N -0.320 5.320 4 N -0.493 5.493 5 H 0.429 0.571 6 C 0.055 3.945 7 C -0.215 4.215 8 C 0.212 3.788 9 N -0.544 5.544 10 C -0.249 4.249 11 H 0.059 0.941 12 C 0.014 3.986 13 N -0.889 5.889 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.289 1.289 18 C 0.130 3.870 19 C -0.194 4.194 20 C -0.227 4.227 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.088 0.912 24 H 0.167 0.833 25 H 0.034 0.966 26 H 0.104 0.896 27 H 0.256 0.744 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.092 6.241 1.410 6.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 N -0.145 5.145 4 N -0.202 5.202 5 H 0.271 0.729 6 C -0.091 4.091 7 C -0.228 4.228 8 C 0.085 3.915 9 N -0.259 5.259 10 C -0.379 4.379 11 H 0.077 0.923 12 C -0.186 4.186 13 N -0.532 5.532 14 Si 0.724 3.276 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.216 1.216 18 C 0.021 3.979 19 C -0.233 4.233 20 C -0.268 4.268 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.106 0.894 24 H 0.184 0.816 25 H 0.052 0.948 26 H 0.121 0.879 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.907 7.356 1.562 7.758 hybrid contribution 1.474 -0.711 -0.733 1.793 sum -0.432 6.645 0.829 6.710 Atomic orbital electron populations 1.20267 0.87687 1.03532 1.01916 1.22167 0.96499 0.90770 0.98966 1.77040 0.87037 1.23088 1.27301 1.46074 1.06684 1.05577 1.61846 0.72934 1.22355 0.99904 0.84325 1.02557 1.21342 0.91269 0.99110 1.11038 1.19359 0.99691 0.86985 0.85439 1.43366 1.02712 1.67834 1.12030 1.18955 1.06088 1.21253 0.91567 0.92319 1.25122 1.00055 0.96235 0.97155 1.69882 1.35948 1.25777 1.21625 0.86356 0.83893 0.77691 0.79696 1.20213 1.21459 1.21592 1.21079 0.88481 0.99667 0.88669 1.23069 1.00858 0.95972 1.03361 1.23403 1.01219 0.92331 1.09813 0.91585 0.91991 0.89351 0.81621 0.94804 0.87859 0.93395 0.89673 0.88419 0.90755 0.90985 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 10.26 36.01 0.37 -0.86 16 2 C 0.08 1.62 7.22 -82.41 -0.59 1.02 16 3 N -0.32 -6.19 12.70 33.67 0.43 -5.76 16 4 N -0.49 -8.48 7.36 30.45 0.22 -8.26 16 5 H 0.43 5.66 8.96 -182.61 -1.64 4.02 16 6 C 0.05 1.05 11.90 -17.22 -0.20 0.84 16 7 C -0.21 -4.47 5.68 -105.05 -0.60 -5.07 16 8 C 0.21 4.83 5.45 -5.19 -0.03 4.80 16 9 N -0.54 -13.03 2.75 -167.03 -0.46 -13.49 16 10 C -0.25 -6.54 8.33 -15.06 -0.13 -6.66 16 11 H 0.06 1.59 7.01 -52.48 -0.37 1.22 16 12 C 0.01 0.37 4.97 -17.43 -0.09 0.28 16 13 N -0.89 -24.34 11.38 55.49 0.63 -23.71 16 14 Si 0.89 20.87 29.61 -169.99 -5.03 15.84 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 C 0.13 2.73 4.80 -67.94 -0.33 2.40 16 19 C -0.19 -3.84 9.78 -26.70 -0.26 -4.10 16 20 C -0.23 -4.34 9.79 -26.70 -0.26 -4.60 16 21 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.09 1.47 4.52 -51.93 -0.23 1.23 16 24 H 0.17 2.96 8.06 -52.49 -0.42 2.54 16 25 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 26 H 0.10 2.62 5.43 -51.93 -0.28 2.34 16 27 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 28 H 0.09 1.64 7.49 -51.93 -0.39 1.25 16 29 H 0.10 2.14 6.63 -51.93 -0.34 1.79 16 30 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 LS Contribution 268.49 15.07 4.05 4.05 Total: -1.00 -29.32 268.49 -7.63 -36.95 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.35 Total: 6.33 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -2.12 Total: -11.95 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.82 Total: -51.22 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.32 -7.63 -36.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611265114.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.115 kcal (2) G-P(sol) polarization free energy of solvation -29.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds