Wall clock time and date at job start Sun Mar 29 2020 22:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30831 * 125.90010 * 2 1 4 4 N 1.40086 * 108.20813 * 180.25653 * 3 2 1 5 5 H 0.96999 * 126.03911 * 179.70166 * 4 3 2 6 6 C 1.34953 * 107.92151 * 359.72579 * 4 3 2 7 7 C 1.35315 * 107.74401 * 359.97438 * 6 4 3 8 8 C 1.50703 * 126.03803 * 180.02562 * 7 6 4 9 9 N 1.46500 * 109.47178 * 260.02371 * 8 7 6 10 10 C 1.36939 * 119.99713 * 89.99713 * 9 8 7 11 11 H 1.08003 * 119.99912 * 217.10407 * 10 9 8 12 12 C 1.38805 * 120.00215 * 36.82876 * 10 9 8 13 13 N 1.31619 * 120.00131 * 20.92878 * 12 10 9 14 14 Si 1.86804 * 120.00142 * 200.92768 * 12 10 9 15 15 H 1.48503 * 109.46906 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47236 * 119.99660 * 14 12 10 17 17 H 1.48492 * 109.47141 * 240.00167 * 14 12 10 18 18 C 1.46496 * 120.00247 * 270.00126 * 9 8 7 19 19 C 1.52990 * 117.50125 * 185.52416 * 18 9 8 20 20 C 1.52997 * 117.50209 * 116.86254 * 18 9 8 21 21 H 1.08995 * 109.47187 * 270.20708 * 1 2 3 22 22 H 1.08994 * 109.47034 * 30.21016 * 1 2 3 23 23 H 1.09001 * 109.47028 * 150.20573 * 1 2 3 24 24 H 1.07997 * 126.12587 * 179.97438 * 6 4 3 25 25 H 1.08994 * 109.47606 * 140.01824 * 8 7 6 26 26 H 1.09000 * 109.46996 * 20.02293 * 8 7 6 27 27 H 0.97006 * 120.00040 * 174.80563 * 13 12 10 28 28 H 1.09004 * 115.54677 * 331.19711 * 18 9 8 29 29 H 1.09003 * 117.50062 * 359.97438 * 19 18 9 30 30 H 1.09008 * 117.50030 * 145.01846 * 19 18 9 31 31 H 1.09003 * 117.49890 * 214.98261 * 20 18 9 32 32 H 1.09001 * 117.49609 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0060 5 1 4.3908 1.2079 -0.0114 6 6 3.6142 -0.7155 -0.0034 7 6 2.3271 -1.1330 0.0045 8 6 1.8599 -2.5657 0.0105 9 7 1.4736 -2.9590 -1.3469 10 6 2.4025 -3.5054 -2.1918 11 1 2.3825 -3.2649 -3.2445 12 6 3.3731 -4.3640 -1.6944 13 7 3.1827 -4.9779 -0.5458 14 14 4.9498 -4.6482 -2.6552 15 1 4.9189 -3.8470 -3.9052 16 1 6.1134 -4.2349 -1.8304 17 1 5.0699 -6.0889 -2.9941 18 6 0.0938 -2.7677 -1.8003 19 6 -0.2790 -3.3153 -3.1794 20 6 -0.1395 -1.8059 -2.9671 21 1 -0.3633 0.0037 1.0276 22 1 -0.3633 0.8880 -0.5171 23 1 -0.3633 -0.8918 -0.5106 24 1 4.4891 -1.3487 -0.0070 25 1 1.0022 -2.6655 0.6756 26 1 2.6670 -3.2097 0.3595 27 1 3.8253 -5.6345 -0.2344 28 1 -0.6670 -2.8070 -1.0207 29 1 0.5025 -3.8177 -3.7495 30 1 -1.2852 -3.7147 -3.3072 31 1 -1.0539 -1.2127 -2.9552 32 1 0.7336 -1.3151 -3.3970 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611265114.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:40 Heat of formation + Delta-G solvation = 102.614173 kcal Electronic energy + Delta-G solvation = -15444.410427 eV Core-core repulsion = 13021.518091 eV Total energy + Delta-G solvation = -2422.892336 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.92615 -38.64012 -35.36362 -33.82795 -32.72350 -30.69013 -28.64579 -27.18701 -24.97567 -22.89464 -21.89174 -21.45518 -20.25980 -18.76430 -17.77840 -17.18853 -16.23381 -15.67454 -15.58701 -14.95328 -14.62255 -14.03185 -13.71067 -13.58302 -13.40806 -13.06221 -12.80029 -12.63317 -12.48101 -12.28169 -12.09867 -11.85376 -11.27074 -11.20898 -10.86064 -10.34688 -10.10306 -9.18795 -8.35341 -7.77261 -5.35110 1.10303 1.42858 1.48404 1.56989 1.98843 2.19198 2.52624 3.21754 3.52099 3.74539 3.99008 4.16419 4.35690 4.50809 4.60581 4.63686 4.79350 4.91614 4.92475 5.00770 5.12333 5.19584 5.27747 5.42453 5.52797 5.59694 5.73250 5.82366 6.00743 6.55445 6.61360 6.92931 7.23517 7.94785 8.45823 9.19384 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022728 B = 0.013184 C = 0.009712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.669374 B = 2123.325717 C = 2882.376837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.077 3.923 3 N -0.332 5.332 4 N -0.478 5.478 5 H 0.446 0.554 6 C 0.056 3.944 7 C -0.241 4.241 8 C 0.221 3.779 9 N -0.558 5.558 10 C -0.251 4.251 11 H 0.043 0.957 12 C -0.025 4.025 13 N -0.914 5.914 14 Si 0.947 3.053 15 H -0.279 1.279 16 H -0.283 1.283 17 H -0.292 1.292 18 C 0.111 3.889 19 C -0.194 4.194 20 C -0.203 4.203 21 H 0.085 0.915 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.175 0.825 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.254 0.746 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.713 7.298 1.249 7.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 N -0.157 5.157 4 N -0.188 5.188 5 H 0.292 0.708 6 C -0.092 4.092 7 C -0.255 4.255 8 C 0.094 3.906 9 N -0.275 5.275 10 C -0.381 4.381 11 H 0.061 0.939 12 C -0.222 4.222 13 N -0.559 5.559 14 Si 0.776 3.224 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.219 1.219 18 C 0.002 3.998 19 C -0.232 4.232 20 C -0.244 4.244 21 H 0.104 0.896 22 H 0.093 0.907 23 H 0.103 0.897 24 H 0.192 0.808 25 H 0.056 0.944 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.123 0.877 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.527 8.452 1.395 8.931 hybrid contribution 1.648 -1.002 -0.689 2.048 sum -0.880 7.450 0.706 7.535 Atomic orbital electron populations 1.20352 0.85656 1.03901 1.03366 1.22573 0.97978 0.90020 0.98364 1.77005 0.87698 1.23264 1.27781 1.46053 1.06962 1.05175 1.60609 0.70815 1.22488 0.99825 0.85199 1.01643 1.21236 0.92410 0.98563 1.13244 1.19106 0.98817 0.87689 0.84982 1.43499 1.03746 1.68204 1.12054 1.18969 1.06974 1.20915 0.91289 0.93892 1.25621 1.02151 0.96417 0.98045 1.69991 1.36644 1.26455 1.22787 0.85536 0.81233 0.77088 0.78529 1.20410 1.20903 1.21909 1.21330 0.87546 1.01182 0.89699 1.23088 1.01553 0.96509 1.02096 1.23282 1.01491 0.92026 1.07605 0.89614 0.90681 0.89749 0.80826 0.94416 0.90704 0.93662 0.87731 0.91139 0.87780 0.87642 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.23 10.26 71.24 0.73 -1.50 16 2 C 0.08 2.88 7.22 43.10 0.31 3.19 16 3 N -0.33 -12.22 12.70 -47.39 -0.60 -12.83 16 4 N -0.48 -15.61 7.36 -57.59 -0.42 -16.04 16 5 H 0.45 10.87 8.96 -213.33 -1.91 8.96 16 6 C 0.06 2.09 11.90 83.54 0.99 3.08 16 7 C -0.24 -9.89 5.68 -20.14 -0.11 -10.01 16 8 C 0.22 10.06 5.45 85.63 0.47 10.52 16 9 N -0.56 -26.69 2.75 -682.37 -1.88 -28.57 16 10 C -0.25 -13.30 8.33 84.03 0.70 -12.60 16 11 H 0.04 2.38 7.01 -2.91 -0.02 2.36 16 12 C -0.02 -1.33 4.97 84.86 0.42 -0.90 16 13 N -0.91 -50.66 11.38 21.65 0.25 -50.41 16 14 Si 0.95 43.23 29.61 68.60 2.03 45.26 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 18 C 0.11 4.48 4.80 44.99 0.22 4.69 16 19 C -0.19 -7.41 9.78 30.61 0.30 -7.11 16 20 C -0.20 -7.39 9.79 30.62 0.30 -7.09 16 21 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 22 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.08 2.60 4.52 -2.39 -0.01 2.59 16 24 H 0.17 6.10 8.06 -2.91 -0.02 6.08 16 25 H 0.04 1.63 8.07 -2.39 -0.02 1.61 16 26 H 0.08 3.87 5.43 -2.39 -0.01 3.85 16 27 H 0.25 13.58 8.32 -92.70 -0.77 12.81 16 28 H 0.11 3.80 7.49 -2.38 -0.02 3.78 16 29 H 0.07 3.08 6.63 -2.39 -0.02 3.07 16 30 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 31 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -61.70 268.49 2.92 -58.78 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -0.78 Total: 21.52 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 4.33 Total: -17.71 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -2.66 Total: -107.85 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -61.70 2.92 -58.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611265114.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.393 kcal (2) G-P(sol) polarization free energy of solvation -61.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds