Wall clock time and date at job start Sun Mar 29 2020 21:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 119.99715 * 2 1 4 4 N 1.46498 * 109.47503 * 124.22951 * 3 2 1 5 5 C 1.36935 * 119.99528 * 274.25557 * 4 3 2 6 6 H 1.08005 * 119.99953 * 324.64799 * 5 4 3 7 7 C 1.38810 * 120.00021 * 144.65689 * 5 4 3 8 8 N 1.31617 * 120.00321 * 157.15850 * 7 5 4 9 9 Si 1.86802 * 119.99947 * 337.15044 * 7 5 4 10 10 H 1.48498 * 109.46882 * 95.52491 * 9 7 5 11 11 H 1.48501 * 109.47282 * 215.52490 * 9 7 5 12 12 H 1.48500 * 109.47244 * 335.52756 * 9 7 5 13 13 C 1.46496 * 120.00161 * 94.24739 * 4 3 2 14 14 C 1.53000 * 109.46865 * 90.00305 * 13 4 3 15 15 C 1.50695 * 109.47591 * 179.97438 * 14 13 4 16 16 C 1.34517 * 125.78876 * 89.99739 * 15 14 13 17 17 C 1.41386 * 106.84089 * 180.02562 * 16 15 14 18 18 C 1.34510 * 106.83922 * 359.97438 * 17 16 15 19 19 O 1.34303 * 108.42548 * 0.02562 * 18 17 16 20 20 H 1.08004 * 119.99528 * 174.98202 * 1 2 3 21 21 H 1.08000 * 120.00390 * 354.97632 * 1 2 3 22 22 H 1.07998 * 120.00419 * 179.97438 * 2 1 3 23 23 H 1.09002 * 109.47077 * 4.21930 * 3 2 1 24 24 H 1.09009 * 109.47042 * 244.22662 * 3 2 1 25 25 H 0.96998 * 120.00622 * 179.97438 * 8 7 5 26 26 H 1.08996 * 109.47257 * 330.00782 * 13 4 3 27 27 H 1.09003 * 109.47172 * 209.99759 * 13 4 3 28 28 H 1.09006 * 109.47139 * 59.99782 * 14 13 4 29 29 H 1.09001 * 109.47555 * 300.00193 * 14 13 4 30 30 H 1.07993 * 126.57763 * 359.97438 * 16 15 14 31 31 H 1.08001 * 126.57762 * 180.02562 * 17 16 15 32 32 H 1.08003 * 125.78686 * 180.26321 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9804 1.3397 1.1419 5 6 2.5349 1.7646 2.3651 6 1 1.8026 2.5560 2.4280 7 6 3.0247 1.1785 3.5241 8 7 2.9734 1.8329 4.6649 9 14 3.7565 -0.5392 3.4648 10 1 5.2319 -0.4441 3.3256 11 1 3.4232 -1.2628 4.7180 12 1 3.1963 -1.2761 2.3036 13 6 4.3739 0.9196 0.9753 14 6 5.2269 2.1270 0.5810 15 6 6.6605 1.6950 0.4102 16 6 7.2199 1.2589 -0.7328 17 6 8.5714 0.9637 -0.4408 18 6 8.7572 1.2377 0.8629 19 8 7.5964 1.6801 1.3733 20 1 -0.5399 -0.9318 -0.0818 21 1 -0.5401 0.9317 0.0819 22 1 1.8500 -0.9352 0.0004 23 1 1.3574 2.1322 0.0756 24 1 2.6321 1.3964 -0.9255 25 1 3.3153 1.4232 5.4749 26 1 4.4340 0.1617 0.1943 27 1 4.7430 0.5048 1.9134 28 1 5.1668 2.8850 1.3620 29 1 4.8579 2.5418 -0.3570 30 1 6.7302 1.1535 -1.6896 31 1 9.3125 0.5907 -1.1322 32 1 9.6839 1.1250 1.4061 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611518081.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:48 Heat of formation + Delta-G solvation = 58.884539 kcal Electronic energy + Delta-G solvation = -14894.788184 eV Core-core repulsion = 12437.706838 eV Total energy + Delta-G solvation = -2457.081346 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.20174 -36.73415 -33.47797 -32.70927 -32.05549 -30.66809 -27.39763 -25.82883 -23.56193 -21.41605 -21.26467 -20.04005 -18.92710 -16.98686 -16.83677 -15.64813 -15.42958 -14.72493 -14.21883 -13.73536 -13.33679 -13.24527 -12.54174 -12.50546 -12.33095 -12.04466 -11.91330 -11.43695 -11.00091 -10.69285 -10.64729 -10.37095 -9.82154 -9.62530 -9.48676 -8.76064 -8.51666 -8.13003 -6.93864 -6.01708 -3.41713 2.07911 2.89440 2.96904 3.32840 3.39361 3.47000 3.50979 4.51300 4.89572 5.21326 5.29190 5.32585 5.43418 5.67390 5.73365 5.87209 6.05199 6.10032 6.12235 6.16239 6.18307 6.41828 6.44849 6.56456 6.65991 6.79611 6.92661 7.25077 7.47227 7.52685 8.00112 8.33927 8.93242 9.67961 10.05236 11.13673 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024427 B = 0.010071 C = 0.008173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.002434 B = 2779.575413 C = 3424.955259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C 0.168 3.832 4 N -0.599 5.599 5 C -0.270 4.270 6 H 0.083 0.917 7 C 0.039 3.961 8 N -0.896 5.896 9 Si 0.873 3.127 10 H -0.284 1.284 11 H -0.301 1.301 12 H -0.269 1.269 13 C 0.142 3.858 14 C -0.064 4.064 15 C 0.017 3.983 16 C -0.233 4.233 17 C -0.214 4.214 18 C -0.059 4.059 19 O -0.173 6.173 20 H 0.082 0.918 21 H 0.092 0.908 22 H 0.093 0.907 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.264 0.736 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.515 -2.123 -10.360 12.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.168 4.168 3 C 0.042 3.958 4 N -0.320 5.320 5 C -0.398 4.398 6 H 0.100 0.900 7 C -0.162 4.162 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.212 1.212 11 H -0.229 1.229 12 H -0.194 1.194 13 C 0.016 3.984 14 C -0.104 4.104 15 C -0.034 4.034 16 C -0.252 4.252 17 C -0.234 4.234 18 C -0.127 4.127 19 O -0.069 6.069 20 H 0.100 0.900 21 H 0.111 0.889 22 H 0.112 0.888 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.162 0.838 31 H 0.160 0.840 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 6.466 -2.009 -9.862 11.962 hybrid contribution 0.661 -1.284 0.028 1.444 sum 7.126 -3.293 -9.834 12.583 Atomic orbital electron populations 1.23570 0.96020 1.00735 1.04731 1.23838 0.96264 1.00400 0.96249 1.20205 0.92353 0.93115 0.90095 1.44192 1.03100 1.77098 1.07599 1.18783 1.25499 1.14528 0.80974 0.89991 1.25395 0.98341 0.97341 0.95121 1.69855 1.47559 1.36526 0.99756 0.86996 0.78322 0.87589 0.76766 1.21185 1.22947 1.19366 1.21200 0.84635 0.93132 0.99393 1.20976 0.83823 1.01937 1.03624 1.22974 0.92034 1.02046 0.86344 1.21521 0.94949 1.09362 0.99393 1.21741 0.97446 1.07837 0.96342 1.23928 0.89197 1.04857 0.94699 1.84101 1.18260 1.65796 1.38699 0.89980 0.88939 0.88844 0.92463 0.92940 0.92638 0.93760 0.92514 0.89217 0.89531 0.83823 0.83996 0.78705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.61 14.32 29.02 0.42 -3.20 16 2 C -0.15 -2.75 9.82 -36.02 -0.35 -3.11 16 3 C 0.17 3.23 6.11 -5.19 -0.03 3.20 16 4 N -0.60 -13.87 2.11 -174.61 -0.37 -14.24 16 5 C -0.27 -7.42 9.93 -15.06 -0.15 -7.57 16 6 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 7 C 0.04 1.12 5.31 -17.43 -0.09 1.03 16 8 N -0.90 -27.36 13.97 55.49 0.78 -26.59 16 9 Si 0.87 22.65 24.97 -169.99 -4.24 18.40 16 10 H -0.28 -7.31 6.67 56.52 0.38 -6.93 16 11 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 12 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.14 3.07 4.47 -4.04 -0.02 3.06 16 14 C -0.06 -1.21 6.07 -27.89 -0.17 -1.38 16 15 C 0.02 0.32 6.58 -35.63 -0.23 0.08 16 16 C -0.23 -3.68 10.81 -39.70 -0.43 -4.11 16 17 C -0.21 -3.04 10.91 -39.70 -0.43 -3.47 16 18 C -0.06 -0.87 12.09 29.41 0.36 -0.51 16 19 O -0.17 -3.26 10.65 5.70 0.06 -3.20 16 20 H 0.08 1.25 8.06 -52.48 -0.42 0.83 16 21 H 0.09 1.51 7.84 -52.49 -0.41 1.10 16 22 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 23 H 0.06 1.10 7.72 -51.93 -0.40 0.70 16 24 H 0.05 0.87 8.04 -51.92 -0.42 0.45 16 25 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 27 H 0.06 1.39 3.01 -51.93 -0.16 1.23 16 28 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 29 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 31 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 32 H 0.20 2.03 8.06 -52.48 -0.42 1.61 16 LS Contribution 276.63 15.07 4.17 4.17 Total: -1.00 -30.99 276.63 -5.10 -36.09 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -4.35 Total: 1.33 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -1.14 Total: -15.98 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.41 Total: -40.82 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: 0.06 Total: -3.20 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.24 Total: 18.40 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.99 -5.10 -36.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611518081.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.976 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds