Wall clock time and date at job start Sun Mar 29 2020 21:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 119.99715 * 2 1 4 4 N 1.46498 * 109.47503 * 124.22951 * 3 2 1 5 5 C 1.36935 * 119.99528 * 274.25557 * 4 3 2 6 6 H 1.08005 * 119.99953 * 324.64799 * 5 4 3 7 7 C 1.38810 * 120.00021 * 144.65689 * 5 4 3 8 8 N 1.31617 * 120.00321 * 157.15850 * 7 5 4 9 9 Si 1.86802 * 119.99947 * 337.15044 * 7 5 4 10 10 H 1.48498 * 109.46882 * 95.52491 * 9 7 5 11 11 H 1.48501 * 109.47282 * 215.52490 * 9 7 5 12 12 H 1.48500 * 109.47244 * 335.52756 * 9 7 5 13 13 C 1.46496 * 120.00161 * 94.24739 * 4 3 2 14 14 C 1.53000 * 109.46865 * 90.00305 * 13 4 3 15 15 C 1.50695 * 109.47591 * 179.97438 * 14 13 4 16 16 C 1.34517 * 125.78876 * 89.99739 * 15 14 13 17 17 C 1.41386 * 106.84089 * 180.02562 * 16 15 14 18 18 C 1.34510 * 106.83922 * 359.97438 * 17 16 15 19 19 O 1.34303 * 108.42548 * 0.02562 * 18 17 16 20 20 H 1.08004 * 119.99528 * 174.98202 * 1 2 3 21 21 H 1.08000 * 120.00390 * 354.97632 * 1 2 3 22 22 H 1.07998 * 120.00419 * 179.97438 * 2 1 3 23 23 H 1.09002 * 109.47077 * 4.21930 * 3 2 1 24 24 H 1.09009 * 109.47042 * 244.22662 * 3 2 1 25 25 H 0.96998 * 120.00622 * 179.97438 * 8 7 5 26 26 H 1.08996 * 109.47257 * 330.00782 * 13 4 3 27 27 H 1.09003 * 109.47172 * 209.99759 * 13 4 3 28 28 H 1.09006 * 109.47139 * 59.99782 * 14 13 4 29 29 H 1.09001 * 109.47555 * 300.00193 * 14 13 4 30 30 H 1.07993 * 126.57763 * 359.97438 * 16 15 14 31 31 H 1.08001 * 126.57762 * 180.02562 * 17 16 15 32 32 H 1.08003 * 125.78686 * 180.26321 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9804 1.3397 1.1419 5 6 2.5349 1.7646 2.3651 6 1 1.8026 2.5560 2.4280 7 6 3.0247 1.1785 3.5241 8 7 2.9734 1.8329 4.6649 9 14 3.7565 -0.5392 3.4648 10 1 5.2319 -0.4441 3.3256 11 1 3.4232 -1.2628 4.7180 12 1 3.1963 -1.2761 2.3036 13 6 4.3739 0.9196 0.9753 14 6 5.2269 2.1270 0.5810 15 6 6.6605 1.6950 0.4102 16 6 7.2199 1.2589 -0.7328 17 6 8.5714 0.9637 -0.4408 18 6 8.7572 1.2377 0.8629 19 8 7.5964 1.6801 1.3733 20 1 -0.5399 -0.9318 -0.0818 21 1 -0.5401 0.9317 0.0819 22 1 1.8500 -0.9352 0.0004 23 1 1.3574 2.1322 0.0756 24 1 2.6321 1.3964 -0.9255 25 1 3.3153 1.4232 5.4749 26 1 4.4340 0.1617 0.1943 27 1 4.7430 0.5048 1.9134 28 1 5.1668 2.8850 1.3620 29 1 4.8579 2.5418 -0.3570 30 1 6.7302 1.1535 -1.6896 31 1 9.3125 0.5907 -1.1322 32 1 9.6839 1.1250 1.4061 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611518081.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:48 Heat of formation + Delta-G solvation = 40.161422 kcal Electronic energy + Delta-G solvation = -14895.600079 eV Core-core repulsion = 12437.706838 eV Total energy + Delta-G solvation = -2457.893241 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.43822 -38.46928 -34.94195 -34.31925 -33.65326 -32.31171 -28.79628 -27.63817 -25.18229 -23.05607 -22.60514 -21.30913 -20.40471 -18.82696 -18.21333 -17.43586 -16.90373 -16.29590 -15.71101 -15.34786 -15.03492 -14.79838 -14.42530 -13.66946 -13.66474 -13.58782 -13.40391 -13.05229 -12.83210 -12.55369 -12.17718 -12.06616 -11.73719 -11.38576 -10.81039 -10.69489 -10.12196 -9.41049 -8.82600 -8.22824 -5.57569 0.84764 1.26176 1.34539 1.44665 1.55101 1.76048 2.21419 2.38222 3.03790 3.41774 3.98573 4.08811 4.20185 4.24617 4.32323 4.42551 4.53000 4.60527 4.70940 4.82439 4.98611 5.00100 5.09173 5.13929 5.25392 5.34563 5.71431 5.83040 5.91696 6.04575 6.17590 6.30894 6.94478 7.60193 8.00649 8.96949 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024427 B = 0.010071 C = 0.008173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.002434 B = 2779.575413 C = 3424.955259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C 0.166 3.834 4 N -0.610 5.610 5 C -0.249 4.249 6 H 0.050 0.950 7 C -0.016 4.016 8 N -0.945 5.945 9 Si 0.933 3.067 10 H -0.286 1.286 11 H -0.310 1.310 12 H -0.256 1.256 13 C 0.141 3.859 14 C -0.050 4.050 15 C -0.026 4.026 16 C -0.217 4.217 17 C -0.217 4.217 18 C -0.062 4.062 19 O -0.209 6.209 20 H 0.103 0.897 21 H 0.096 0.904 22 H 0.093 0.907 23 H 0.053 0.947 24 H 0.085 0.915 25 H 0.261 0.739 26 H 0.070 0.930 27 H 0.026 0.974 28 H 0.054 0.946 29 H 0.111 0.889 30 H 0.168 0.832 31 H 0.177 0.823 32 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.564 -3.515 -12.923 15.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.191 4.191 3 C 0.042 3.958 4 N -0.332 5.332 5 C -0.379 4.379 6 H 0.068 0.932 7 C -0.213 4.213 8 N -0.590 5.590 9 Si 0.764 3.236 10 H -0.214 1.214 11 H -0.239 1.239 12 H -0.180 1.180 13 C 0.015 3.985 14 C -0.090 4.090 15 C -0.077 4.077 16 C -0.236 4.236 17 C -0.235 4.235 18 C -0.128 4.128 19 O -0.106 6.106 20 H 0.121 0.879 21 H 0.115 0.885 22 H 0.111 0.889 23 H 0.071 0.929 24 H 0.103 0.897 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.130 0.870 30 H 0.185 0.815 31 H 0.195 0.805 32 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 7.513 -3.416 -12.486 14.967 hybrid contribution 0.348 -0.783 0.702 1.108 sum 7.861 -4.199 -11.784 14.775 Atomic orbital electron populations 1.23817 0.95644 1.01992 1.01983 1.23751 0.96890 0.99808 0.98673 1.20344 0.92196 0.93518 0.89766 1.44282 1.04645 1.77197 1.07036 1.18687 1.23483 1.12806 0.82922 0.93205 1.25922 1.00054 1.00336 0.94969 1.69972 1.50521 1.38000 1.00491 0.86012 0.77494 0.83662 0.76457 1.21401 1.23929 1.17975 1.21212 0.83884 0.94692 0.98671 1.20674 0.84999 0.99772 1.03513 1.22860 0.91888 1.05442 0.87469 1.21909 0.95628 1.06807 0.99266 1.22181 0.97420 1.07280 0.96653 1.24829 0.89077 1.03268 0.95642 1.84067 1.19724 1.66883 1.39953 0.87870 0.88523 0.88912 0.92886 0.89720 0.92960 0.91192 0.95563 0.92690 0.87043 0.81462 0.80546 0.75134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.16 14.32 67.78 0.97 -5.19 16 2 C -0.17 -6.00 9.82 25.65 0.25 -5.75 16 3 C 0.17 6.09 6.11 85.63 0.52 6.61 16 4 N -0.61 -27.83 2.11 -706.34 -1.49 -29.33 16 5 C -0.25 -13.99 9.93 84.03 0.83 -13.16 16 6 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 7 C -0.02 -0.96 5.31 84.86 0.45 -0.51 16 8 N -0.95 -59.95 13.97 21.65 0.30 -59.65 16 9 Si 0.93 47.90 24.97 68.60 1.71 49.62 16 10 H -0.29 -14.58 6.67 99.48 0.66 -13.91 16 11 H -0.31 -16.15 7.11 99.48 0.71 -15.44 16 12 H -0.26 -12.37 7.11 99.48 0.71 -11.67 16 13 C 0.14 5.92 4.47 86.38 0.39 6.31 16 14 C -0.05 -1.88 6.07 29.85 0.18 -1.70 16 15 C -0.03 -0.92 6.58 24.83 0.16 -0.76 16 16 C -0.22 -6.16 10.81 22.19 0.24 -5.92 16 17 C -0.22 -5.33 10.91 22.19 0.24 -5.09 16 18 C -0.06 -1.65 12.09 66.97 0.81 -0.85 16 19 O -0.21 -7.73 10.65 -2.52 -0.03 -7.76 16 20 H 0.10 2.80 8.06 -2.91 -0.02 2.77 16 21 H 0.10 2.94 7.84 -2.91 -0.02 2.92 16 22 H 0.09 3.28 8.06 -2.91 -0.02 3.26 16 23 H 0.05 1.97 7.72 -2.39 -0.02 1.95 16 24 H 0.08 2.54 8.04 -2.38 -0.02 2.52 16 25 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 26 H 0.07 2.56 8.07 -2.39 -0.02 2.54 16 27 H 0.03 1.28 3.01 -2.39 -0.01 1.27 16 28 H 0.05 2.40 8.14 -2.38 -0.02 2.38 16 29 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 30 H 0.17 3.82 8.06 -2.91 -0.02 3.80 16 31 H 0.18 3.03 8.06 -2.91 -0.02 3.01 16 32 H 0.23 4.05 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -68.71 276.63 6.59 -62.12 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 1.04 Total: 11.00 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 5.05 Total: -26.01 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -1.19 Total: -88.98 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.03 Total: -7.76 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.71 Total: 49.62 kcal Total: -68.71 6.59 -62.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611518081.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.284 kcal (2) G-P(sol) polarization free energy of solvation -68.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds