Wall clock time and date at job start Sun Mar 29 2020 22:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46731 * 2 1 4 4 C 1.50703 * 109.46957 * 119.99604 * 2 1 3 5 5 C 1.38386 * 120.00253 * 274.64280 * 4 2 1 6 6 N 1.32126 * 119.99906 * 179.78013 * 5 4 2 7 7 C 1.32149 * 119.99933 * 0.49806 * 6 5 4 8 8 C 1.38350 * 120.00067 * 359.73525 * 7 6 5 9 9 N 1.32126 * 119.99967 * 94.91930 * 4 2 1 10 10 N 1.46893 * 109.47288 * 239.99867 * 2 1 3 11 11 C 1.46901 * 111.00093 * 52.62864 * 10 2 1 12 12 C 1.46903 * 111.00317 * 176.58744 * 10 2 1 13 13 C 1.50691 * 109.47211 * 169.99691 * 12 10 2 14 14 H 1.07998 * 120.00577 * 0.02562 * 13 12 10 15 15 C 1.37888 * 119.99964 * 179.97438 * 13 12 10 16 16 N 1.31512 * 119.99499 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99951 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47054 * 90.00471 * 17 15 13 19 19 H 1.48503 * 109.47042 * 209.99654 * 17 15 13 20 20 H 1.48496 * 109.47573 * 330.00013 * 17 15 13 21 21 H 1.08995 * 109.47408 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47350 * 300.00171 * 1 2 3 23 23 H 1.08999 * 109.46918 * 60.00365 * 1 2 3 24 24 H 1.07998 * 120.00123 * 0.02632 * 5 4 2 25 25 H 1.08004 * 120.00282 * 179.71466 * 7 6 5 26 26 H 1.08001 * 119.99804 * 180.02562 * 8 7 6 27 27 H 1.09005 * 109.46702 * 177.36125 * 11 10 2 28 28 H 1.08997 * 109.46714 * 57.36564 * 11 10 2 29 29 H 1.08994 * 109.47496 * 297.36125 * 11 10 2 30 30 H 1.08997 * 109.46635 * 290.00048 * 12 10 2 31 31 H 1.09008 * 109.46974 * 49.99390 * 12 10 2 32 32 H 0.97001 * 119.99462 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.1715 -0.0182 2.4208 6 7 2.6078 -0.6420 3.5007 7 6 2.9205 -1.9246 3.4417 8 6 2.7860 -2.6155 2.2506 9 7 2.3450 -1.9927 1.1717 10 7 2.0197 -0.6925 -1.1993 11 6 1.4104 -0.1356 -2.4145 12 6 3.4859 -0.6418 -1.2748 13 6 3.9646 -1.5604 -2.3693 14 1 3.2511 -2.1251 -2.9510 15 6 5.3136 -1.6792 -2.6288 16 7 6.1824 -0.9904 -1.9214 17 14 5.9070 -2.8184 -3.9850 18 1 5.9799 -2.0686 -5.2647 19 1 7.2539 -3.3398 -3.6395 20 1 4.9592 -3.9525 -4.1290 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.9198 1.0310 2.4679 25 1 3.2815 -2.4336 4.3233 26 1 3.0412 -3.6638 2.2026 27 1 1.8252 -0.6345 -3.2904 28 1 1.6220 0.9322 -2.4704 29 1 0.3320 -0.2912 -2.3844 30 1 3.8034 0.3781 -1.4916 31 1 3.9100 -0.9596 -0.3222 32 1 7.1313 -1.0737 -2.1043 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613448933.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:11 Heat of formation + Delta-G solvation = 58.958434 kcal Electronic energy + Delta-G solvation = -15083.178093 eV Core-core repulsion = 12658.392702 eV Total energy + Delta-G solvation = -2424.785390 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.73333 -37.16930 -33.71349 -32.93686 -31.67196 -29.56214 -26.93692 -25.62566 -24.31957 -23.51384 -21.74791 -19.65864 -17.15194 -16.64919 -16.36862 -15.70322 -14.85321 -14.60079 -14.16897 -13.94238 -13.34355 -12.78036 -12.73094 -11.92652 -11.86798 -11.68338 -11.22956 -11.11507 -11.03186 -10.76697 -10.73939 -10.58437 -10.25548 -9.79264 -9.17162 -8.85007 -8.55704 -8.36655 -7.18290 -5.97959 -3.97609 1.13886 1.58579 3.33889 3.39932 3.45100 4.09157 4.41556 4.44099 4.61290 4.70411 5.02727 5.14691 5.37913 5.44519 5.60965 5.68651 5.70339 5.76753 5.94900 6.08032 6.22102 6.30728 6.45667 6.71993 6.77322 7.33081 7.34655 7.66540 7.84323 8.12127 8.25090 8.28504 8.60515 9.09327 9.65289 11.13306 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027740 B = 0.009269 C = 0.007658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.136656 B = 3020.224477 C = 3655.256045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.127 3.873 3 H 0.049 0.951 4 C 0.106 3.894 5 C 0.040 3.960 6 N -0.443 5.443 7 C 0.028 3.972 8 C 0.052 3.948 9 N -0.386 5.386 10 N -0.519 5.519 11 C 0.034 3.966 12 C 0.197 3.803 13 C -0.497 4.497 14 H 0.063 0.937 15 C 0.053 3.947 16 N -0.902 5.902 17 Si 0.897 3.103 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.273 1.273 21 H 0.064 0.936 22 H 0.052 0.948 23 H 0.065 0.935 24 H 0.162 0.838 25 H 0.163 0.837 26 H 0.165 0.835 27 H 0.077 0.923 28 H 0.009 0.991 29 H 0.050 0.950 30 H -0.016 1.016 31 H 0.031 0.969 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.061 0.899 7.027 11.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.016 3.984 3 H 0.067 0.933 4 C -0.035 4.035 5 C -0.120 4.120 6 N -0.158 5.158 7 C -0.132 4.132 8 C -0.108 4.108 9 N -0.100 5.100 10 N -0.244 5.244 11 C -0.114 4.114 12 C 0.072 3.928 13 C -0.535 4.535 14 H 0.082 0.918 15 C -0.148 4.148 16 N -0.542 5.542 17 Si 0.725 3.275 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.197 1.197 21 H 0.084 0.916 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.179 0.821 25 H 0.180 0.820 26 H 0.182 0.818 27 H 0.095 0.905 28 H 0.028 0.972 29 H 0.069 0.931 30 H 0.002 0.998 31 H 0.049 0.951 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.003 0.427 7.081 11.462 hybrid contribution 0.950 0.227 -0.692 1.197 sum -8.053 0.654 6.389 10.300 Atomic orbital electron populations 1.21876 0.93680 1.02726 1.01463 1.20435 0.94963 0.94062 0.88893 0.93292 1.22250 0.94377 0.91365 0.95493 1.23420 0.97935 1.01203 0.89452 1.68359 1.07975 1.09568 1.29896 1.23638 0.98712 0.91440 0.99369 1.23887 0.95978 1.01764 0.89202 1.68541 1.05016 1.08783 1.27707 1.62094 1.10773 1.52481 0.99048 1.22303 0.98081 0.96438 0.94625 1.19703 0.79979 0.95071 0.98002 1.21123 0.91500 1.24551 1.16372 0.91848 1.24984 0.96810 0.96210 0.96769 1.69968 1.01797 1.41908 1.40512 0.86515 0.77997 0.81099 0.81913 1.20825 1.21373 1.19744 0.91648 0.92856 0.91578 0.82122 0.82028 0.81813 0.90460 0.97229 0.93122 0.99803 0.95116 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.69 37.16 0.32 -1.66 16 2 C 0.13 2.29 2.34 -68.87 -0.16 2.13 16 3 H 0.05 0.86 8.11 -51.93 -0.42 0.44 16 4 C 0.11 1.96 4.81 -82.41 -0.40 1.56 16 5 C 0.04 0.65 10.90 -17.37 -0.19 0.46 16 6 N -0.44 -7.20 10.50 -13.06 -0.14 -7.34 16 7 C 0.03 0.41 11.22 -17.37 -0.20 0.22 16 8 C 0.05 0.85 11.22 -17.37 -0.20 0.65 16 9 N -0.39 -7.68 8.94 -9.29 -0.08 -7.76 16 10 N -0.52 -11.36 4.26 -237.74 -1.01 -12.38 16 11 C 0.03 0.65 8.76 60.06 0.53 1.18 16 12 C 0.20 5.27 4.42 -4.98 -0.02 5.24 16 13 C -0.50 -14.25 8.42 -34.44 -0.29 -14.54 16 14 H 0.06 1.80 7.14 -52.49 -0.37 1.43 16 15 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 16 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 17 Si 0.90 22.08 29.54 -169.99 -5.02 17.05 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 0.86 6.38 -51.93 -0.33 0.53 16 24 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16 25 H 0.16 1.73 8.06 -52.48 -0.42 1.30 16 26 H 0.16 2.17 8.06 -52.49 -0.42 1.74 16 27 H 0.08 1.61 6.70 -51.93 -0.35 1.26 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.05 0.82 6.37 -51.93 -0.33 0.49 16 30 H -0.02 -0.45 8.12 -51.93 -0.42 -0.87 16 31 H 0.03 0.89 6.32 -51.92 -0.33 0.56 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 270.15 15.07 4.07 4.07 Total: -1.00 -33.01 270.15 -6.37 -39.38 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -4.23 Total: -3.03 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -0.70 Total: -3.31 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.50 Total: -54.17 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -33.01 -6.37 -39.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613448933.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.343 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds