Wall clock time and date at job start Sun Mar 29 2020 22:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46731 * 2 1 4 4 C 1.50703 * 109.46957 * 119.99604 * 2 1 3 5 5 C 1.38386 * 120.00253 * 274.64280 * 4 2 1 6 6 N 1.32126 * 119.99906 * 179.78013 * 5 4 2 7 7 C 1.32149 * 119.99933 * 0.49806 * 6 5 4 8 8 C 1.38350 * 120.00067 * 359.73525 * 7 6 5 9 9 N 1.32126 * 119.99967 * 94.91930 * 4 2 1 10 10 N 1.46893 * 109.47288 * 239.99867 * 2 1 3 11 11 C 1.46901 * 111.00093 * 52.62864 * 10 2 1 12 12 C 1.46903 * 111.00317 * 176.58744 * 10 2 1 13 13 C 1.50691 * 109.47211 * 169.99691 * 12 10 2 14 14 H 1.07998 * 120.00577 * 0.02562 * 13 12 10 15 15 C 1.37888 * 119.99964 * 179.97438 * 13 12 10 16 16 N 1.31512 * 119.99499 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99951 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47054 * 90.00471 * 17 15 13 19 19 H 1.48503 * 109.47042 * 209.99654 * 17 15 13 20 20 H 1.48496 * 109.47573 * 330.00013 * 17 15 13 21 21 H 1.08995 * 109.47408 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47350 * 300.00171 * 1 2 3 23 23 H 1.08999 * 109.46918 * 60.00365 * 1 2 3 24 24 H 1.07998 * 120.00123 * 0.02632 * 5 4 2 25 25 H 1.08004 * 120.00282 * 179.71466 * 7 6 5 26 26 H 1.08001 * 119.99804 * 180.02562 * 8 7 6 27 27 H 1.09005 * 109.46702 * 177.36125 * 11 10 2 28 28 H 1.08997 * 109.46714 * 57.36564 * 11 10 2 29 29 H 1.08994 * 109.47496 * 297.36125 * 11 10 2 30 30 H 1.08997 * 109.46635 * 290.00048 * 12 10 2 31 31 H 1.09008 * 109.46974 * 49.99390 * 12 10 2 32 32 H 0.97001 * 119.99462 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.1715 -0.0182 2.4208 6 7 2.6078 -0.6420 3.5007 7 6 2.9205 -1.9246 3.4417 8 6 2.7860 -2.6155 2.2506 9 7 2.3450 -1.9927 1.1717 10 7 2.0197 -0.6925 -1.1993 11 6 1.4104 -0.1356 -2.4145 12 6 3.4859 -0.6418 -1.2748 13 6 3.9646 -1.5604 -2.3693 14 1 3.2511 -2.1251 -2.9510 15 6 5.3136 -1.6792 -2.6288 16 7 6.1824 -0.9904 -1.9214 17 14 5.9070 -2.8184 -3.9850 18 1 5.9799 -2.0686 -5.2647 19 1 7.2539 -3.3398 -3.6395 20 1 4.9592 -3.9525 -4.1290 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.9198 1.0310 2.4679 25 1 3.2815 -2.4336 4.3233 26 1 3.0412 -3.6638 2.2026 27 1 1.8252 -0.6345 -3.2904 28 1 1.6220 0.9322 -2.4704 29 1 0.3320 -0.2912 -2.3844 30 1 3.8034 0.3781 -1.4916 31 1 3.9100 -0.9596 -0.3222 32 1 7.1313 -1.0737 -2.1043 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613448933.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:11 Heat of formation + Delta-G solvation = 34.823818 kcal Electronic energy + Delta-G solvation = -15084.224648 eV Core-core repulsion = 12658.392702 eV Total energy + Delta-G solvation = -2425.831946 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.00522 -38.74105 -35.17715 -34.79742 -33.24237 -30.98518 -28.75299 -27.29352 -25.61091 -24.94660 -23.56554 -21.18013 -18.57482 -18.42811 -17.80382 -17.12858 -16.69310 -16.11729 -15.71237 -15.32015 -14.99118 -14.37278 -13.94444 -13.88601 -13.35374 -13.20381 -12.83381 -12.72795 -12.47682 -12.40690 -12.35886 -12.10822 -12.02370 -11.64035 -11.26678 -10.60887 -10.08569 -9.82535 -8.92719 -8.19482 -6.27862 -0.09480 0.31241 1.38762 1.40495 1.52374 2.39994 2.83549 3.12775 3.18710 3.23204 3.46031 3.77111 3.87331 4.25154 4.31306 4.43929 4.49458 4.54927 4.61342 4.73970 4.91446 4.96030 5.09610 5.17769 5.28639 5.40436 5.50993 5.66226 6.08329 6.37412 6.44245 6.66826 6.88386 7.02925 7.40830 8.91728 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027740 B = 0.009269 C = 0.007658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.136656 B = 3020.224477 C = 3655.256045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.122 3.878 3 H 0.051 0.949 4 C 0.081 3.919 5 C 0.041 3.959 6 N -0.456 5.456 7 C 0.040 3.960 8 C 0.038 3.962 9 N -0.433 5.433 10 N -0.530 5.530 11 C 0.036 3.964 12 C 0.219 3.781 13 C -0.512 4.512 14 H 0.061 0.939 15 C -0.001 4.001 16 N -0.938 5.938 17 Si 0.968 3.032 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.265 1.265 21 H 0.054 0.946 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.188 0.812 25 H 0.204 0.796 26 H 0.187 0.813 27 H 0.055 0.945 28 H 0.014 0.986 29 H 0.086 0.914 30 H -0.050 1.050 31 H 0.003 0.997 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.924 0.505 7.342 12.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.012 3.988 3 H 0.069 0.931 4 C -0.060 4.060 5 C -0.119 4.119 6 N -0.171 5.171 7 C -0.120 4.120 8 C -0.122 4.122 9 N -0.148 5.148 10 N -0.255 5.255 11 C -0.112 4.112 12 C 0.093 3.907 13 C -0.551 4.551 14 H 0.079 0.921 15 C -0.198 4.198 16 N -0.579 5.579 17 Si 0.793 3.207 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.190 1.190 21 H 0.073 0.927 22 H 0.100 0.900 23 H 0.099 0.901 24 H 0.205 0.795 25 H 0.221 0.779 26 H 0.204 0.796 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.105 0.895 30 H -0.032 1.032 31 H 0.021 0.979 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.900 0.048 7.394 12.356 hybrid contribution 1.201 0.347 -0.703 1.434 sum -8.699 0.395 6.691 10.982 Atomic orbital electron populations 1.21815 0.90517 1.02644 1.03584 1.20628 0.97399 0.93596 0.87187 0.93126 1.22381 0.95777 0.91455 0.96363 1.23767 0.97120 1.02268 0.88733 1.68466 1.08450 1.10347 1.29801 1.24255 0.96717 0.90925 1.00114 1.24356 0.95800 1.02956 0.89121 1.68412 1.06541 1.09977 1.29822 1.61964 1.07797 1.54270 1.01435 1.22321 0.99834 0.96260 0.92794 1.19251 0.83204 0.92441 0.95837 1.21440 0.91906 1.24806 1.16921 0.92111 1.25903 0.96950 0.97755 0.99239 1.70102 1.02134 1.43459 1.42255 0.85403 0.77426 0.79028 0.78889 1.19679 1.20901 1.18978 0.92714 0.90048 0.90142 0.79487 0.77941 0.79610 0.92644 0.96725 0.89506 1.03223 0.97906 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 8.69 71.98 0.63 -2.74 16 2 C 0.12 4.35 2.34 44.17 0.10 4.45 16 3 H 0.05 1.77 8.11 -2.39 -0.02 1.75 16 4 C 0.08 2.96 4.81 42.55 0.20 3.16 16 5 C 0.04 1.27 10.90 84.68 0.92 2.20 16 6 N -0.46 -14.07 10.50 -195.22 -2.05 -16.12 16 7 C 0.04 1.08 11.22 84.67 0.95 2.03 16 8 C 0.04 1.21 11.22 84.67 0.95 2.16 16 9 N -0.43 -17.31 8.94 -183.29 -1.64 -18.94 16 10 N -0.53 -23.40 4.26 -906.06 -3.86 -27.26 16 11 C 0.04 1.36 8.76 127.69 1.12 2.48 16 12 C 0.22 12.07 4.42 85.55 0.38 12.45 16 13 C -0.51 -29.99 8.42 25.60 0.22 -29.78 16 14 H 0.06 3.51 7.14 -2.91 -0.02 3.49 16 15 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 16 N -0.94 -58.22 13.29 21.45 0.28 -57.93 16 17 Si 0.97 45.55 29.54 68.60 2.03 47.57 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 23 H 0.08 1.86 6.38 -2.39 -0.02 1.84 16 24 H 0.19 4.58 8.06 -2.91 -0.02 4.56 16 25 H 0.20 3.66 8.06 -2.91 -0.02 3.64 16 26 H 0.19 4.74 8.06 -2.91 -0.02 4.72 16 27 H 0.05 2.32 6.70 -2.38 -0.02 2.31 16 28 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 2.64 6.37 -2.39 -0.02 2.63 16 30 H -0.05 -2.99 8.12 -2.39 -0.02 -3.01 16 31 H 0.00 0.17 6.32 -2.38 -0.02 0.16 16 32 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -72.62 270.15 1.79 -70.83 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 1.10 Total: 5.07 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 5.93 Total: -3.21 kcal Atomic # 7 Polarization: -113.00 SS G_CDS: -7.27 Total: -120.26 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -72.62 1.79 -70.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613448933.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.654 kcal (2) G-P(sol) polarization free energy of solvation -72.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds