Wall clock time and date at job start Sun Mar 29 2020 22:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31858 * 1 3 3 N 1.39529 * 119.99728 * 2 1 4 4 C 1.35820 * 126.10164 * 180.27925 * 3 2 1 5 5 C 1.35322 * 107.62174 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.02263 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.46922 * 89.99808 * 6 5 4 8 8 C 1.36940 * 119.99986 * 270.00097 * 7 6 5 9 9 H 1.08006 * 120.00057 * 146.03361 * 8 7 6 10 10 C 1.38813 * 120.00183 * 326.03835 * 8 7 6 11 11 N 1.31614 * 120.00183 * 336.65423 * 10 8 7 12 12 Si 1.86798 * 119.99904 * 156.65066 * 10 8 7 13 13 H 1.48498 * 109.47324 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47250 * 120.00132 * 12 10 8 15 15 H 1.48500 * 109.47203 * 239.99897 * 12 10 8 16 16 C 1.46494 * 120.00068 * 90.00478 * 7 6 5 17 17 C 1.53001 * 109.47033 * 89.49104 * 16 7 6 18 18 C 1.39926 * 107.96628 * 359.97438 * 5 4 3 19 19 N 1.30863 * 108.36293 * 359.71897 * 18 5 4 20 20 H 1.08001 * 120.00015 * 179.72243 * 1 2 3 21 21 H 1.08005 * 119.99723 * 359.72529 * 1 2 3 22 22 H 1.07997 * 119.99858 * 180.28181 * 2 1 3 23 23 H 1.08003 * 126.19233 * 359.97438 * 4 3 2 24 24 H 1.08995 * 109.47509 * 210.00089 * 6 5 4 25 25 H 1.09007 * 109.46631 * 330.00446 * 6 5 4 26 26 H 0.97000 * 120.00233 * 179.97438 * 11 10 8 27 27 H 1.09002 * 109.47562 * 209.48772 * 16 7 6 28 28 H 1.09000 * 109.47352 * 329.49384 * 16 7 6 29 29 H 1.09000 * 109.47273 * 180.02562 * 17 16 7 30 30 H 1.09001 * 109.47410 * 300.00093 * 17 16 7 31 31 H 1.09005 * 109.47465 * 60.00245 * 17 16 7 32 32 H 1.08004 * 125.81788 * 180.02562 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3186 0.0000 0.0000 3 7 2.0162 1.2084 0.0000 4 6 3.3667 1.3528 -0.0053 5 6 3.6369 2.6788 -0.0027 6 6 5.0081 3.3039 -0.0062 7 7 5.4471 3.5102 -1.3885 8 6 6.1442 2.5275 -2.0395 9 1 6.0106 2.3837 -3.1015 10 6 7.0225 1.7162 -1.3343 11 7 7.5411 2.1372 -0.2003 12 14 7.4683 0.0267 -1.9949 13 1 6.7569 -0.2069 -3.2773 14 1 8.9340 -0.0450 -2.2223 15 1 7.0688 -1.0109 -1.0105 16 6 5.1405 4.7678 -2.0745 17 6 6.2672 5.7725 -1.8252 18 6 2.4188 3.3675 0.0039 19 7 1.4487 2.4893 -0.0009 20 1 -0.5400 -0.9353 -0.0045 21 1 -0.5400 0.9354 0.0045 22 1 1.8585 -0.9353 -0.0046 23 1 4.0935 0.5540 -0.0100 24 1 4.9716 4.2629 0.5104 25 1 5.7098 2.6432 0.5031 26 1 8.1546 1.5701 0.2926 27 1 5.0475 4.5846 -3.1450 28 1 4.2029 5.1711 -1.6920 29 1 6.0389 6.7084 -2.3352 30 1 6.3603 5.9558 -0.7547 31 1 7.2049 5.3693 -2.2077 32 1 2.2997 4.4409 0.0070 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618593496.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:04 Heat of formation + Delta-G solvation = 121.645369 kcal Electronic energy + Delta-G solvation = -14996.702300 eV Core-core repulsion = 12574.635219 eV Total energy + Delta-G solvation = -2422.067081 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.68117 -35.98844 -34.32145 -31.79531 -30.47515 -29.84124 -28.16208 -25.26328 -23.33141 -22.62358 -20.62598 -19.62259 -18.82444 -17.04125 -16.39207 -14.77176 -14.59188 -14.03635 -13.83982 -13.79483 -13.63616 -12.69103 -12.32765 -12.18552 -11.92326 -11.41211 -11.22634 -11.14321 -10.75345 -10.54919 -10.46728 -10.25666 -10.00096 -9.75544 -9.66178 -8.54827 -8.47471 -7.53711 -6.61273 -5.79353 -3.29920 1.67425 3.01886 3.13911 3.30298 3.41538 3.44352 3.50028 4.48630 4.88444 5.30198 5.33980 5.54490 5.69626 5.85896 5.99049 6.15891 6.31686 6.35896 6.47863 6.51291 6.62779 6.66275 6.73788 7.01450 7.10723 7.25962 7.34310 7.70463 7.77745 7.83189 8.23102 8.51385 9.19361 9.83689 10.40999 11.21256 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022707 B = 0.010801 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.803589 B = 2591.778851 C = 3501.420380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.092 3.908 3 N -0.345 5.345 4 C 0.052 3.948 5 C -0.203 4.203 6 C 0.205 3.795 7 N -0.578 5.578 8 C -0.246 4.246 9 H 0.059 0.941 10 C 0.007 3.993 11 N -0.886 5.886 12 Si 0.888 3.112 13 H -0.277 1.277 14 H -0.290 1.290 15 H -0.288 1.288 16 C 0.143 3.857 17 C -0.162 4.162 18 C 0.057 3.943 19 N -0.312 5.312 20 H 0.115 0.885 21 H 0.110 0.890 22 H 0.150 0.850 23 H 0.170 0.830 24 H 0.034 0.966 25 H 0.106 0.894 26 H 0.253 0.747 27 H 0.039 0.961 28 H 0.033 0.967 29 H 0.029 0.971 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.063 -1.169 1.312 8.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.020 4.020 3 N -0.124 5.124 4 C -0.088 4.088 5 C -0.216 4.216 6 C 0.077 3.923 7 N -0.298 5.298 8 C -0.376 4.376 9 H 0.077 0.923 10 C -0.192 4.192 11 N -0.529 5.529 12 Si 0.718 3.282 13 H -0.202 1.202 14 H -0.217 1.217 15 H -0.215 1.215 16 C 0.017 3.983 17 C -0.222 4.222 18 C -0.131 4.131 19 N -0.131 5.131 20 H 0.134 0.866 21 H 0.128 0.872 22 H 0.168 0.832 23 H 0.188 0.812 24 H 0.052 0.948 25 H 0.123 0.877 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -9.176 -1.481 1.393 9.399 hybrid contribution 1.187 -0.909 -0.383 1.544 sum -7.989 -2.390 1.010 8.400 Atomic orbital electron populations 1.23804 0.94495 1.03128 1.05709 1.21180 0.93774 0.85699 1.01305 1.46101 1.04709 1.04314 1.57243 1.22602 0.83959 0.99323 1.02921 1.21664 0.98796 0.92221 1.08875 1.19427 0.87889 0.97921 0.87037 1.43875 1.61592 1.12622 1.11727 1.19102 1.16448 1.08585 0.93487 0.92291 1.25007 0.96212 0.99983 0.98033 1.69988 1.30316 1.35357 1.17225 0.86451 0.77977 0.85219 0.78598 1.20213 1.21686 1.21505 1.20842 0.94397 0.86970 0.96080 1.22281 1.01631 0.97763 1.00514 1.23917 0.90896 0.99235 0.99038 1.77182 1.22768 0.87393 1.25769 0.86648 0.87163 0.83227 0.81233 0.94765 0.87652 0.93643 0.94234 0.94898 0.95155 0.93753 0.92733 0.80624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.99 14.35 28.83 0.41 -2.57 16 2 C 0.09 1.34 10.78 -15.94 -0.17 1.17 16 3 N -0.34 -6.37 3.80 -12.74 -0.05 -6.42 16 4 C 0.05 1.04 11.38 -16.83 -0.19 0.85 16 5 C -0.20 -4.21 5.68 -105.03 -0.60 -4.80 16 6 C 0.20 4.66 5.78 -5.19 -0.03 4.63 16 7 N -0.58 -13.98 2.43 -174.61 -0.43 -14.41 16 8 C -0.25 -6.54 9.48 -15.06 -0.14 -6.68 16 9 H 0.06 1.60 7.93 -52.48 -0.42 1.19 16 10 C 0.01 0.19 4.94 -17.43 -0.09 0.10 16 11 N -0.89 -24.35 11.34 55.49 0.63 -23.72 16 12 Si 0.89 20.78 29.61 -169.99 -5.03 15.75 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 C 0.14 3.01 6.39 -4.04 -0.03 2.99 16 17 C -0.16 -3.20 10.24 37.16 0.38 -2.82 16 18 C 0.06 1.07 11.95 -17.33 -0.21 0.86 16 19 N -0.31 -6.01 11.73 30.64 0.36 -5.65 16 20 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 21 H 0.11 1.61 7.54 -52.48 -0.40 1.21 16 22 H 0.15 1.73 8.06 -52.49 -0.42 1.30 16 23 H 0.17 3.25 8.06 -52.48 -0.42 2.83 16 24 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 25 H 0.11 2.69 5.33 -51.92 -0.28 2.42 16 26 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.04 0.83 8.04 -51.93 -0.42 0.41 16 28 H 0.03 0.63 8.08 -51.93 -0.42 0.21 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.18 2.78 8.06 -52.48 -0.42 2.36 16 LS Contribution 281.15 15.07 4.24 4.24 Total: -1.00 -29.31 281.15 -5.38 -34.69 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -4.44 Total: 1.80 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -0.66 Total: -6.28 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.52 Total: -50.19 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.31 -5.38 -34.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618593496.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.331 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds