Wall clock time and date at job start Sun Mar 29 2020 22:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31858 * 1 3 3 N 1.39529 * 119.99728 * 2 1 4 4 C 1.35820 * 126.10164 * 180.27925 * 3 2 1 5 5 C 1.35322 * 107.62174 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.02263 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.46922 * 89.99808 * 6 5 4 8 8 C 1.36940 * 119.99986 * 270.00097 * 7 6 5 9 9 H 1.08006 * 120.00057 * 146.03361 * 8 7 6 10 10 C 1.38813 * 120.00183 * 326.03835 * 8 7 6 11 11 N 1.31614 * 120.00183 * 336.65423 * 10 8 7 12 12 Si 1.86798 * 119.99904 * 156.65066 * 10 8 7 13 13 H 1.48498 * 109.47324 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47250 * 120.00132 * 12 10 8 15 15 H 1.48500 * 109.47203 * 239.99897 * 12 10 8 16 16 C 1.46494 * 120.00068 * 90.00478 * 7 6 5 17 17 C 1.53001 * 109.47033 * 89.49104 * 16 7 6 18 18 C 1.39926 * 107.96628 * 359.97438 * 5 4 3 19 19 N 1.30863 * 108.36293 * 359.71897 * 18 5 4 20 20 H 1.08001 * 120.00015 * 179.72243 * 1 2 3 21 21 H 1.08005 * 119.99723 * 359.72529 * 1 2 3 22 22 H 1.07997 * 119.99858 * 180.28181 * 2 1 3 23 23 H 1.08003 * 126.19233 * 359.97438 * 4 3 2 24 24 H 1.08995 * 109.47509 * 210.00089 * 6 5 4 25 25 H 1.09007 * 109.46631 * 330.00446 * 6 5 4 26 26 H 0.97000 * 120.00233 * 179.97438 * 11 10 8 27 27 H 1.09002 * 109.47562 * 209.48772 * 16 7 6 28 28 H 1.09000 * 109.47352 * 329.49384 * 16 7 6 29 29 H 1.09000 * 109.47273 * 180.02562 * 17 16 7 30 30 H 1.09001 * 109.47410 * 300.00093 * 17 16 7 31 31 H 1.09005 * 109.47465 * 60.00245 * 17 16 7 32 32 H 1.08004 * 125.81788 * 180.02562 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3186 0.0000 0.0000 3 7 2.0162 1.2084 0.0000 4 6 3.3667 1.3528 -0.0053 5 6 3.6369 2.6788 -0.0027 6 6 5.0081 3.3039 -0.0062 7 7 5.4471 3.5102 -1.3885 8 6 6.1442 2.5275 -2.0395 9 1 6.0106 2.3837 -3.1015 10 6 7.0225 1.7162 -1.3343 11 7 7.5411 2.1372 -0.2003 12 14 7.4683 0.0267 -1.9949 13 1 6.7569 -0.2069 -3.2773 14 1 8.9340 -0.0450 -2.2223 15 1 7.0688 -1.0109 -1.0105 16 6 5.1405 4.7678 -2.0745 17 6 6.2672 5.7725 -1.8252 18 6 2.4188 3.3675 0.0039 19 7 1.4487 2.4893 -0.0009 20 1 -0.5400 -0.9353 -0.0045 21 1 -0.5400 0.9354 0.0045 22 1 1.8585 -0.9353 -0.0046 23 1 4.0935 0.5540 -0.0100 24 1 4.9716 4.2629 0.5104 25 1 5.7098 2.6432 0.5031 26 1 8.1546 1.5701 0.2926 27 1 5.0475 4.5846 -3.1450 28 1 4.2029 5.1711 -1.6920 29 1 6.0389 6.7084 -2.3352 30 1 6.3603 5.9558 -0.7547 31 1 7.2049 5.3693 -2.2077 32 1 2.2997 4.4409 0.0070 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618593496.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:03 Heat of formation + Delta-G solvation = 105.688958 kcal Electronic energy + Delta-G solvation = -14997.394222 eV Core-core repulsion = 12574.635219 eV Total energy + Delta-G solvation = -2422.759003 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.12732 -37.75240 -35.60777 -33.71336 -32.07665 -31.19830 -29.87383 -27.03453 -25.10153 -23.94692 -22.27720 -21.18055 -20.23587 -18.63838 -17.97863 -16.70412 -16.11377 -15.63007 -15.43081 -15.34729 -15.07113 -14.27727 -13.90871 -13.82565 -13.15782 -13.03186 -12.97282 -12.87380 -12.49166 -12.23982 -12.15750 -11.85207 -11.71506 -11.46092 -11.33967 -10.49062 -9.92147 -8.94689 -8.54474 -7.77335 -5.31805 0.38843 1.44154 1.50108 1.58975 1.71453 1.85783 1.97249 2.56186 3.29417 3.69080 3.95128 4.06556 4.18464 4.50667 4.62250 4.68751 4.79838 4.89357 4.92845 4.99419 5.14124 5.22599 5.35239 5.42396 5.49227 5.61900 5.73192 5.82939 5.92296 6.44034 6.52793 6.79239 7.23183 7.94636 8.46190 9.19916 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022707 B = 0.010801 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.803589 B = 2591.778851 C = 3501.420380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.053 3.947 3 N -0.343 5.343 4 C 0.048 3.952 5 C -0.224 4.224 6 C 0.213 3.787 7 N -0.593 5.593 8 C -0.256 4.256 9 H 0.047 0.953 10 C -0.031 4.031 11 N -0.911 5.911 12 Si 0.944 3.056 13 H -0.276 1.276 14 H -0.295 1.295 15 H -0.282 1.282 16 C 0.138 3.862 17 C -0.150 4.150 18 C 0.056 3.944 19 N -0.323 5.323 20 H 0.155 0.845 21 H 0.094 0.906 22 H 0.179 0.821 23 H 0.171 0.829 24 H 0.039 0.961 25 H 0.077 0.923 26 H 0.251 0.749 27 H 0.036 0.964 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.025 0.975 32 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.592 -1.777 1.092 9.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.056 4.056 3 N -0.122 5.122 4 C -0.094 4.094 5 C -0.236 4.236 6 C 0.086 3.914 7 N -0.313 5.313 8 C -0.387 4.387 9 H 0.065 0.935 10 C -0.228 4.228 11 N -0.556 5.556 12 Si 0.773 3.227 13 H -0.201 1.201 14 H -0.222 1.222 15 H -0.208 1.208 16 C 0.013 3.987 17 C -0.210 4.210 18 C -0.131 4.131 19 N -0.144 5.144 20 H 0.173 0.827 21 H 0.112 0.888 22 H 0.196 0.804 23 H 0.188 0.812 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -10.749 -2.097 1.172 11.014 hybrid contribution 1.531 -0.735 -0.316 1.727 sum -9.218 -2.832 0.856 9.682 Atomic orbital electron populations 1.24130 0.93916 1.04211 1.01859 1.21829 0.94698 0.85386 1.03717 1.46343 1.04314 1.05148 1.56413 1.22640 0.84914 0.99225 1.02651 1.21437 0.98356 0.92899 1.10942 1.19170 0.88407 0.97604 0.86186 1.44073 1.61708 1.13398 1.12118 1.19193 1.16627 1.09632 0.93222 0.93522 1.25540 0.96382 1.02482 0.98389 1.70099 1.31014 1.36190 1.18266 0.85590 0.77109 0.81921 0.78127 1.20060 1.22237 1.20770 1.20979 0.95786 0.86230 0.95744 1.22130 0.99693 0.98880 1.00264 1.24205 0.89822 1.00422 0.98662 1.77126 1.23146 0.87931 1.26169 0.82714 0.88801 0.80351 0.81207 0.94239 0.90569 0.93917 0.94571 0.92639 0.91598 0.94441 0.95551 0.78154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.57 14.35 67.01 0.96 -3.61 16 2 C 0.05 1.42 10.78 82.66 0.89 2.31 16 3 N -0.34 -12.22 3.80 -194.21 -0.74 -12.95 16 4 C 0.05 1.87 11.38 83.40 0.95 2.82 16 5 C -0.22 -9.19 5.68 -20.13 -0.11 -9.30 16 6 C 0.21 9.78 5.78 85.63 0.49 10.28 16 7 N -0.59 -28.74 2.43 -706.34 -1.72 -30.46 16 8 C -0.26 -13.74 9.48 84.03 0.80 -12.94 16 9 H 0.05 2.57 7.93 -2.91 -0.02 2.55 16 10 C -0.03 -1.64 4.94 84.86 0.42 -1.22 16 11 N -0.91 -50.93 11.34 21.65 0.25 -50.68 16 12 Si 0.94 43.01 29.61 68.60 2.03 45.04 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 15 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 16 C 0.14 5.68 6.39 86.38 0.55 6.24 16 17 C -0.15 -5.78 10.24 71.98 0.74 -5.05 16 18 C 0.06 2.02 11.95 85.25 1.02 3.04 16 19 N -0.32 -12.02 11.73 -56.97 -0.67 -12.69 16 20 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 21 H 0.09 2.50 7.54 -2.91 -0.02 2.48 16 22 H 0.18 3.61 8.06 -2.91 -0.02 3.59 16 23 H 0.17 6.52 8.06 -2.91 -0.02 6.50 16 24 H 0.04 1.71 8.07 -2.39 -0.02 1.69 16 25 H 0.08 3.99 5.33 -2.38 -0.01 3.98 16 26 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 27 H 0.04 1.49 8.04 -2.39 -0.02 1.47 16 28 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.20 5.96 8.06 -2.91 -0.02 5.93 16 Total: -1.00 -62.56 281.15 6.94 -55.62 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 1.08 Total: 13.54 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 6.71 Total: -7.42 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -2.88 Total: -106.78 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -62.56 6.94 -55.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618593496.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.307 kcal (2) G-P(sol) polarization free energy of solvation -62.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds