Wall clock time and date at job start Sun Mar 29 2020 21:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31073 * 126.66429 * 2 1 4 4 N 1.28839 * 107.99189 * 180.24406 * 3 2 1 5 5 N 1.28738 * 109.39542 * 359.75115 * 4 3 2 6 6 N 1.29018 * 108.81141 * 359.97438 * 5 4 3 7 7 C 1.46494 * 126.43693 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.46777 * 90.02938 * 7 6 5 9 9 H 1.08995 * 109.47448 * 304.99480 * 8 7 6 10 10 C 1.47197 * 109.47200 * 64.99954 * 8 7 6 11 11 N 3.53418 * 61.42571 * 122.28572 * 2 1 3 12 12 C 1.53002 * 109.46893 * 184.99600 * 8 7 6 13 13 C 1.50706 * 109.47153 * 174.99718 * 12 8 7 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 8 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 8 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46758 * 269.72576 * 17 15 13 19 19 H 1.48499 * 109.47026 * 29.72423 * 17 15 13 20 20 H 1.48496 * 109.47474 * 149.72459 * 17 15 13 21 21 H 1.09002 * 109.46860 * 270.17485 * 1 2 3 22 22 H 1.09002 * 109.46907 * 30.17059 * 1 2 3 23 23 H 1.08991 * 109.47084 * 150.17427 * 1 2 3 24 24 H 1.08997 * 109.47647 * 330.03140 * 7 6 5 25 25 H 1.09001 * 109.47420 * 210.02660 * 7 6 5 26 26 H 1.09004 * 109.47178 * 55.00508 * 12 8 7 27 27 H 1.08993 * 109.47411 * 295.00191 * 12 8 7 28 28 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2897 1.0514 0.0000 4 7 3.5102 0.6389 -0.0052 5 7 3.5265 -0.6484 -0.0033 6 7 2.3106 -1.0798 0.0038 7 6 1.8847 -2.4814 0.0077 8 6 1.7435 -2.9674 1.4516 9 1 2.6780 -2.7957 1.9858 10 6 0.6566 -2.2283 2.1141 11 7 -0.1834 -1.6578 2.6239 12 6 1.4204 -4.4629 1.4570 13 6 1.4026 -4.9679 2.8769 14 1 1.6014 -4.2898 3.6936 15 6 1.1325 -6.2954 3.1331 16 7 0.8852 -7.1199 2.1388 17 14 1.1097 -6.9212 4.8931 18 1 2.4681 -7.3878 5.2701 19 1 0.6928 -5.8242 5.8031 20 1 0.1500 -8.0488 5.0051 21 1 -0.3633 0.0031 1.0277 22 1 -0.3633 0.8885 -0.5165 23 1 -0.3633 -0.8915 -0.5111 24 1 2.6280 -3.0885 -0.5089 25 1 0.9250 -2.5710 -0.5012 26 1 2.1800 -5.0008 0.8897 27 1 0.4437 -4.6253 1.0013 28 1 0.8967 -6.7950 1.2250 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618953803.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:13 Heat of formation + Delta-G solvation = 126.715301 kcal Electronic energy + Delta-G solvation = -14510.183967 eV Core-core repulsion = 11984.796391 eV Total energy + Delta-G solvation = -2525.387576 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.12603 -37.78143 -35.39794 -34.15699 -33.54499 -32.04378 -28.79251 -27.49075 -24.65888 -23.30315 -22.47009 -21.82231 -17.99411 -17.51986 -16.80457 -16.63310 -14.92106 -14.50056 -14.21384 -13.87890 -13.74089 -13.54406 -12.89362 -12.59083 -12.46267 -12.13599 -12.02461 -11.93285 -11.65860 -11.19874 -11.09422 -10.80208 -10.66248 -10.40794 -10.20611 -9.90489 -8.91709 -8.59334 -6.62499 -4.36537 1.25961 1.98727 2.27536 3.04468 3.14843 3.32906 3.36261 3.51482 3.97303 4.03009 4.33023 4.36144 4.63247 4.70721 5.12371 5.16120 5.23047 5.34763 5.40215 5.58797 5.71721 5.78319 5.85659 6.22291 6.74447 6.87186 7.74786 7.88272 8.15845 8.58516 8.66205 9.34377 10.78327 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.046726 B = 0.006853 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.093040 B = 4084.765626 C = 4236.986767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.187 3.813 3 N -0.310 5.310 4 N -0.082 5.082 5 N -0.090 5.090 6 N -0.305 5.305 7 C 0.116 3.884 8 C 0.001 3.999 9 H 0.117 0.883 10 C 0.227 3.773 11 N -0.443 5.443 12 C 0.022 3.978 13 C -0.612 4.612 14 H 0.053 0.947 15 C 0.026 3.974 16 N -0.903 5.903 17 Si 1.068 2.932 18 H -0.284 1.284 19 H -0.288 1.288 20 H -0.282 1.282 21 H 0.100 0.900 22 H 0.101 0.899 23 H 0.086 0.914 24 H 0.133 0.867 25 H 0.116 0.884 26 H 0.037 0.963 27 H 0.024 0.976 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.234 7.225 -6.212 9.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 N -0.161 5.161 4 N -0.075 5.075 5 N -0.076 5.076 6 N -0.107 5.107 7 C -0.006 4.006 8 C -0.022 4.022 9 H 0.135 0.865 10 C -0.091 4.091 11 N -0.120 5.120 12 C -0.017 4.017 13 C -0.650 4.650 14 H 0.071 0.929 15 C -0.180 4.180 16 N -0.538 5.538 17 Si 0.896 3.104 18 H -0.211 1.211 19 H -0.214 1.214 20 H -0.208 1.208 21 H 0.119 0.881 22 H 0.120 0.880 23 H 0.105 0.895 24 H 0.151 0.849 25 H 0.134 0.866 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.472 7.395 -4.530 8.685 hybrid contribution -0.168 0.459 -0.997 1.111 sum -0.640 7.854 -5.528 9.625 Atomic orbital electron populations 1.20565 0.82809 1.05145 1.05697 1.26060 0.98740 0.82786 1.01451 1.74973 0.96911 1.24488 1.19697 1.78558 1.12948 1.00827 1.15202 1.78868 1.02475 1.08060 1.18215 1.48731 1.04407 1.10516 1.47076 1.22624 1.03992 0.74463 0.99503 1.19492 0.94011 0.98121 0.90539 0.86540 1.28911 0.94217 0.92198 0.93740 1.81040 1.11011 1.11571 1.08335 1.19318 0.97696 0.84633 1.00017 1.21891 1.54477 0.97396 0.91197 0.92912 1.25799 0.92979 0.93260 1.05936 1.70807 1.44596 1.37928 1.00497 0.83526 0.77171 0.75868 0.73821 1.21081 1.21429 1.20764 0.88149 0.88028 0.89542 0.84923 0.86598 0.94473 0.95803 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.25 36.01 0.33 -0.56 15 2 C 0.19 2.66 7.58 -155.43 -1.18 1.48 15 3 N -0.31 -5.16 12.36 32.70 0.40 -4.76 15 4 N -0.08 -1.43 13.43 60.35 0.81 -0.62 15 5 N -0.09 -1.47 13.29 60.35 0.80 -0.67 15 6 N -0.31 -4.29 3.21 -58.27 -0.19 -4.48 15 7 C 0.12 1.37 5.63 -4.04 -0.02 1.35 15 8 C 0.00 0.02 2.42 -93.40 -0.23 -0.21 15 9 H 0.12 1.90 8.14 -51.93 -0.42 1.48 15 10 C 0.23 4.03 12.07 -20.76 -0.25 3.78 15 11 N -0.44 -8.44 16.90 42.16 0.71 -7.72 15 12 C 0.02 0.44 3.74 -27.88 -0.10 0.33 15 13 C -0.61 -15.11 8.60 -34.44 -0.30 -15.41 15 14 H 0.05 1.34 7.59 -52.49 -0.40 0.94 15 15 C 0.03 0.67 5.46 -17.82 -0.10 0.57 15 16 N -0.90 -24.72 13.65 55.43 0.76 -23.96 15 17 Si 1.07 23.69 29.90 -169.99 -5.08 18.61 15 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 19 H -0.29 -6.26 7.11 56.52 0.40 -5.86 15 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 21 H 0.10 1.26 6.27 -51.93 -0.33 0.93 15 22 H 0.10 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.09 0.75 7.16 -51.93 -0.37 0.38 15 24 H 0.13 1.30 8.14 -51.93 -0.42 0.87 15 25 H 0.12 1.07 7.13 -51.93 -0.37 0.70 15 26 H 0.04 0.72 8.01 -51.93 -0.42 0.30 15 27 H 0.02 0.48 8.00 -51.93 -0.42 0.07 15 28 H 0.27 7.10 7.22 -40.82 -0.29 6.80 15 LS Contribution 254.61 15.07 3.84 3.84 Total: -1.00 -30.43 254.61 -2.45 -32.87 By element: Atomic # 1 Polarization: -1.78 SS G_CDS: -2.66 Total: -4.44 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -1.84 Total: -8.66 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 3.30 Total: -42.21 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -5.08 Total: 18.61 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.43 -2.45 -32.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618953803.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.586 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds