Wall clock time and date at job start Sun Mar 29 2020 21:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31073 * 126.66429 * 2 1 4 4 N 1.28839 * 107.99189 * 180.24406 * 3 2 1 5 5 N 1.28738 * 109.39542 * 359.75115 * 4 3 2 6 6 N 1.29018 * 108.81141 * 359.97438 * 5 4 3 7 7 C 1.46494 * 126.43693 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.46777 * 90.02938 * 7 6 5 9 9 H 1.08995 * 109.47448 * 304.99480 * 8 7 6 10 10 C 1.47197 * 109.47200 * 64.99954 * 8 7 6 11 11 N 3.53418 * 61.42571 * 122.28572 * 2 1 3 12 12 C 1.53002 * 109.46893 * 184.99600 * 8 7 6 13 13 C 1.50706 * 109.47153 * 174.99718 * 12 8 7 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 8 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 8 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46758 * 269.72576 * 17 15 13 19 19 H 1.48499 * 109.47026 * 29.72423 * 17 15 13 20 20 H 1.48496 * 109.47474 * 149.72459 * 17 15 13 21 21 H 1.09002 * 109.46860 * 270.17485 * 1 2 3 22 22 H 1.09002 * 109.46907 * 30.17059 * 1 2 3 23 23 H 1.08991 * 109.47084 * 150.17427 * 1 2 3 24 24 H 1.08997 * 109.47647 * 330.03140 * 7 6 5 25 25 H 1.09001 * 109.47420 * 210.02660 * 7 6 5 26 26 H 1.09004 * 109.47178 * 55.00508 * 12 8 7 27 27 H 1.08993 * 109.47411 * 295.00191 * 12 8 7 28 28 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2897 1.0514 0.0000 4 7 3.5102 0.6389 -0.0052 5 7 3.5265 -0.6484 -0.0033 6 7 2.3106 -1.0798 0.0038 7 6 1.8847 -2.4814 0.0077 8 6 1.7435 -2.9674 1.4516 9 1 2.6780 -2.7957 1.9858 10 6 0.6566 -2.2283 2.1141 11 7 -0.1834 -1.6578 2.6239 12 6 1.4204 -4.4629 1.4570 13 6 1.4026 -4.9679 2.8769 14 1 1.6014 -4.2898 3.6936 15 6 1.1325 -6.2954 3.1331 16 7 0.8852 -7.1199 2.1388 17 14 1.1097 -6.9212 4.8931 18 1 2.4681 -7.3878 5.2701 19 1 0.6928 -5.8242 5.8031 20 1 0.1500 -8.0488 5.0051 21 1 -0.3633 0.0031 1.0277 22 1 -0.3633 0.8885 -0.5165 23 1 -0.3633 -0.8915 -0.5111 24 1 2.6280 -3.0885 -0.5089 25 1 0.9250 -2.5710 -0.5012 26 1 2.1800 -5.0008 0.8897 27 1 0.4437 -4.6253 1.0013 28 1 0.8967 -6.7950 1.2250 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618953803.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:12 Heat of formation + Delta-G solvation = 107.081581 kcal Electronic energy + Delta-G solvation = -14511.035349 eV Core-core repulsion = 11984.796391 eV Total energy + Delta-G solvation = -2526.238958 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.29403 -39.11005 -36.70335 -35.82233 -34.64903 -33.61198 -29.89326 -28.84654 -26.20569 -24.47475 -24.14202 -22.93960 -19.50498 -18.74469 -18.21614 -18.01389 -15.99272 -15.88100 -15.68169 -15.47629 -14.99333 -14.58825 -14.24994 -14.03552 -13.63872 -13.46879 -13.36405 -13.30103 -12.99165 -12.71448 -12.38334 -12.26971 -12.05611 -12.00451 -11.83145 -11.08178 -10.72908 -10.52882 -8.63458 -6.36026 0.11405 0.92791 1.06942 1.54690 1.59619 1.66377 1.72272 1.77064 2.54216 2.80051 2.98808 3.19462 3.24044 3.53309 3.69287 4.10946 4.23422 4.29890 4.40457 4.45118 4.57558 4.69717 4.80387 5.13263 5.16987 5.28855 5.90483 6.19367 6.48982 6.63703 7.38647 7.46787 8.80168 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.046726 B = 0.006853 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.093040 B = 4084.765626 C = 4236.986767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.194 3.806 3 N -0.335 5.335 4 N -0.106 5.106 5 N -0.099 5.099 6 N -0.301 5.301 7 C 0.119 3.881 8 C 0.012 3.988 9 H 0.112 0.888 10 C 0.231 3.769 11 N -0.466 5.466 12 C 0.025 3.975 13 C -0.619 4.619 14 H 0.040 0.960 15 C -0.020 4.020 16 N -0.932 5.932 17 Si 1.101 2.899 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.284 1.284 21 H 0.085 0.915 22 H 0.123 0.877 23 H 0.112 0.888 24 H 0.160 0.840 25 H 0.150 0.850 26 H 0.047 0.953 27 H 0.023 0.977 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.517 7.251 -6.887 10.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 N -0.185 5.185 4 N -0.100 5.100 5 N -0.085 5.085 6 N -0.104 5.104 7 C -0.002 4.002 8 C -0.011 4.011 9 H 0.130 0.870 10 C -0.086 4.086 11 N -0.142 5.142 12 C -0.013 4.013 13 C -0.657 4.657 14 H 0.058 0.942 15 C -0.220 4.220 16 N -0.569 5.569 17 Si 0.925 3.075 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.104 0.896 22 H 0.141 0.859 23 H 0.131 0.869 24 H 0.177 0.823 25 H 0.168 0.832 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.746 7.432 -5.207 9.105 hybrid contribution -0.104 0.474 -0.765 0.906 sum -0.850 7.905 -5.972 9.944 Atomic orbital electron populations 1.20754 0.80446 1.07612 1.05330 1.26600 0.99803 0.82218 0.99779 1.74923 0.97025 1.25780 1.20783 1.78538 1.13700 1.01441 1.16291 1.78807 1.03581 1.07768 1.18369 1.48824 1.03831 1.11143 1.46583 1.22805 1.06807 0.73641 0.96899 1.19337 0.92944 0.95672 0.93150 0.86988 1.29297 0.94147 0.91878 0.93285 1.81051 1.11808 1.12322 1.09047 1.19161 0.97870 0.87044 0.97259 1.22290 1.52910 0.97044 0.93448 0.94207 1.26781 0.92974 0.94222 1.08068 1.70883 1.46855 1.38458 1.00741 0.83083 0.77743 0.75507 0.71151 1.19665 1.21040 1.21011 0.89624 0.85903 0.86917 0.82259 0.83182 0.93531 0.95913 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.55 9.25 71.24 0.66 -0.89 15 2 C 0.19 5.07 7.58 138.13 1.05 6.11 15 3 N -0.33 -10.73 12.36 -50.45 -0.62 -11.36 15 4 N -0.11 -3.63 13.43 37.01 0.50 -3.13 15 5 N -0.10 -3.06 13.29 37.02 0.49 -2.57 15 6 N -0.30 -7.74 3.21 -338.27 -1.09 -8.82 15 7 C 0.12 2.41 5.63 86.38 0.49 2.90 15 8 C 0.01 0.35 2.42 -12.60 -0.03 0.32 15 9 H 0.11 3.47 8.14 -2.39 -0.02 3.45 15 10 C 0.23 7.81 12.07 89.44 1.08 8.89 15 11 N -0.47 -17.08 16.90 20.01 0.34 -16.74 15 12 C 0.03 0.96 3.74 29.85 0.11 1.07 15 13 C -0.62 -29.98 8.60 25.60 0.22 -29.76 15 14 H 0.04 1.99 7.59 -2.91 -0.02 1.97 15 15 C -0.02 -1.03 5.46 84.65 0.46 -0.57 15 16 N -0.93 -50.47 13.65 21.45 0.29 -50.17 15 17 Si 1.10 47.15 29.90 68.60 2.05 49.20 15 18 H -0.27 -10.94 7.11 99.48 0.71 -10.23 15 19 H -0.28 -11.87 7.11 99.48 0.71 -11.16 15 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 21 H 0.09 1.97 6.27 -2.39 -0.01 1.95 15 22 H 0.12 1.79 8.14 -2.39 -0.02 1.77 15 23 H 0.11 1.51 7.16 -2.39 -0.02 1.50 15 24 H 0.16 2.47 8.14 -2.39 -0.02 2.45 15 25 H 0.15 2.08 7.13 -2.39 -0.02 2.06 15 26 H 0.05 1.70 8.01 -2.39 -0.02 1.68 15 27 H 0.02 0.87 8.00 -2.39 -0.02 0.85 15 28 H 0.27 13.90 7.22 -92.71 -0.67 13.23 15 Total: -1.00 -64.79 254.61 7.28 -57.51 By element: Atomic # 1 Polarization: -3.26 SS G_CDS: 1.28 Total: -1.98 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 4.03 Total: -11.93 kcal Atomic # 7 Polarization: -92.71 SS G_CDS: -0.09 Total: -92.80 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.05 Total: 49.20 kcal Total: -64.79 7.28 -57.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618953803.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.591 kcal (2) G-P(sol) polarization free energy of solvation -64.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds