Wall clock time and date at job start Sun Mar 29 2020 21:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31063 * 126.66406 * 2 1 4 4 N 1.28838 * 107.99209 * 180.24353 * 3 2 1 5 5 N 1.28734 * 109.39911 * 359.75395 * 4 3 2 6 6 N 1.29019 * 108.80481 * 359.97438 * 5 4 3 7 7 C 1.46505 * 126.43541 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47212 * 90.02655 * 7 6 5 9 9 H 1.09008 * 109.47017 * 54.99771 * 8 7 6 10 10 C 1.47205 * 109.47256 * 295.00106 * 8 7 6 11 11 N 4.70559 * 123.16112 * 138.57738 * 2 1 3 12 12 C 1.52994 * 109.47404 * 174.99693 * 8 7 6 13 13 C 1.50701 * 109.47248 * 184.99754 * 12 8 7 14 14 H 1.07997 * 120.00120 * 0.02562 * 13 12 8 15 15 C 1.37881 * 119.99825 * 179.97438 * 13 12 8 16 16 N 1.31509 * 120.00260 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99910 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47012 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47039 * 120.00256 * 17 15 13 20 20 H 1.48497 * 109.47404 * 240.00231 * 17 15 13 21 21 H 1.09003 * 109.47060 * 270.17161 * 1 2 3 22 22 H 1.08997 * 109.47100 * 30.17038 * 1 2 3 23 23 H 1.08996 * 109.47235 * 150.17727 * 1 2 3 24 24 H 1.09002 * 109.47068 * 210.02715 * 7 6 5 25 25 H 1.09001 * 109.47372 * 330.02803 * 7 6 5 26 26 H 1.09001 * 109.47698 * 305.00111 * 12 8 7 27 27 H 1.09009 * 109.47010 * 65.00116 * 12 8 7 28 28 H 0.97000 * 120.00592 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2896 1.0513 0.0000 4 7 3.5102 0.6389 -0.0052 5 7 3.5265 -0.6484 -0.0033 6 7 2.3106 -1.0797 0.0037 7 6 1.8847 -2.4815 0.0076 8 6 1.7435 -2.9677 1.4513 9 1 1.0671 -2.3063 1.9929 10 6 3.0634 -2.9600 2.1030 11 7 4.0810 -2.9538 2.6062 12 6 1.1798 -4.3900 1.4578 13 6 0.9256 -4.8232 2.8786 14 1 1.1439 -4.1511 3.6953 15 6 0.4134 -6.0772 3.1358 16 7 0.1472 -6.8955 2.1413 17 14 0.0977 -6.6140 4.8969 18 1 0.4773 -5.5178 5.8241 19 1 -1.3434 -6.9291 5.0675 20 1 0.9075 -7.8214 5.1993 21 1 -0.3633 0.0031 1.0277 22 1 -0.3633 0.8884 -0.5165 23 1 -0.3633 -0.8915 -0.5111 24 1 0.9249 -2.5710 -0.5014 25 1 2.6280 -3.0886 -0.5092 26 1 0.2447 -4.4129 0.8982 27 1 1.8973 -5.0672 0.9943 28 1 -0.2128 -7.7779 2.3222 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618953804.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:15 Heat of formation + Delta-G solvation = 105.170499 kcal Electronic energy + Delta-G solvation = -14399.847615 eV Core-core repulsion = 11873.525786 eV Total energy + Delta-G solvation = -2526.321828 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.16549 -38.89602 -36.65058 -35.44909 -34.51174 -33.54224 -29.85289 -28.90730 -26.39877 -24.35661 -23.73250 -22.84393 -19.15415 -18.55893 -18.17589 -17.60859 -16.55716 -15.84774 -15.50677 -15.03910 -14.78152 -14.32048 -13.99383 -13.93564 -13.59093 -13.38049 -13.13325 -13.04794 -12.88153 -12.72994 -12.54366 -12.25083 -12.16184 -11.92246 -11.53534 -11.24796 -10.89739 -10.54866 -8.21109 -6.27383 0.27117 1.08885 1.21239 1.38875 1.45024 1.52362 1.82374 1.87846 2.41577 2.98085 3.17365 3.23217 3.38533 3.66951 3.97512 4.16744 4.39808 4.50456 4.57522 4.78696 4.85149 4.90087 5.08060 5.40231 5.45543 5.57878 5.77046 6.17043 6.64322 6.85204 7.41585 7.59295 8.89227 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.042475 B = 0.006923 C = 0.006528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.054826 B = 4043.617708 C = 4288.164490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.200 3.800 3 N -0.343 5.343 4 N -0.114 5.114 5 N -0.120 5.120 6 N -0.305 5.305 7 C 0.118 3.882 8 C 0.007 3.993 9 H 0.133 0.867 10 C 0.234 3.766 11 N -0.494 5.494 12 C 0.042 3.958 13 C -0.539 4.539 14 H 0.049 0.951 15 C 0.022 3.978 16 N -0.915 5.915 17 Si 0.938 3.062 18 H -0.275 1.275 19 H -0.271 1.271 20 H -0.290 1.290 21 H 0.113 0.887 22 H 0.114 0.886 23 H 0.124 0.876 24 H 0.186 0.814 25 H 0.121 0.879 26 H 0.065 0.935 27 H 0.013 0.987 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.796 8.257 -6.959 12.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.077 4.077 3 N -0.193 5.193 4 N -0.108 5.108 5 N -0.106 5.106 6 N -0.107 5.107 7 C -0.002 4.002 8 C -0.016 4.016 9 H 0.151 0.849 10 C -0.083 4.083 11 N -0.171 5.171 12 C 0.003 3.997 13 C -0.578 4.578 14 H 0.067 0.933 15 C -0.178 4.178 16 N -0.555 5.555 17 Si 0.765 3.235 18 H -0.200 1.200 19 H -0.197 1.197 20 H -0.216 1.216 21 H 0.132 0.868 22 H 0.133 0.867 23 H 0.143 0.857 24 H 0.203 0.797 25 H 0.139 0.861 26 H 0.083 0.917 27 H 0.031 0.969 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.052 8.756 -6.244 11.492 hybrid contribution -0.708 -1.219 1.057 1.762 sum -4.760 7.537 -5.187 10.314 Atomic orbital electron populations 1.20857 0.78207 1.07813 1.06930 1.27097 1.00604 0.81348 0.98639 1.74887 0.96847 1.26336 1.21257 1.78539 1.14374 1.01436 1.16452 1.78887 1.04722 1.07964 1.19071 1.48889 1.03658 1.11462 1.46703 1.22852 1.07139 0.73075 0.97154 1.19670 0.85515 1.03340 0.93049 0.84933 1.29645 0.94805 0.91018 0.92784 1.81019 1.14329 1.11006 1.10706 1.19031 0.97371 0.86555 0.96751 1.21467 1.42558 1.00042 0.93684 0.93282 1.25507 0.95515 0.96926 0.99874 1.69972 1.44902 1.08529 1.32100 0.85798 0.78158 0.77932 0.81568 1.19950 1.19659 1.21614 0.86847 0.86742 0.85728 0.79685 0.86068 0.91657 0.96904 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.22 71.24 0.73 -0.04 15 2 C 0.20 4.49 8.13 138.14 1.12 5.61 15 3 N -0.34 -10.55 12.36 -50.46 -0.62 -11.17 15 4 N -0.11 -4.12 13.43 37.01 0.50 -3.62 15 5 N -0.12 -4.09 13.02 37.02 0.48 -3.61 15 6 N -0.30 -7.73 3.10 -338.26 -1.05 -8.77 15 7 C 0.12 2.36 5.59 86.38 0.48 2.84 15 8 C 0.01 0.20 2.42 -12.60 -0.03 0.17 15 9 H 0.13 3.28 8.14 -2.38 -0.02 3.26 15 10 C 0.23 9.03 13.43 89.45 1.20 10.23 15 11 N -0.49 -21.99 18.53 20.00 0.37 -21.62 15 12 C 0.04 1.55 4.42 29.85 0.13 1.68 15 13 C -0.54 -25.35 8.60 25.60 0.22 -25.13 15 14 H 0.05 2.36 7.59 -2.91 -0.02 2.33 15 15 C 0.02 1.08 5.46 84.66 0.46 1.55 15 16 N -0.92 -47.47 13.29 21.45 0.28 -47.19 15 17 Si 0.94 40.57 29.54 68.60 2.03 42.59 15 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 19 H -0.27 -11.22 7.11 99.48 0.71 -10.52 15 20 H -0.29 -12.78 7.11 99.48 0.71 -12.08 15 21 H 0.11 0.90 8.14 -2.39 -0.02 0.88 15 22 H 0.11 0.85 8.14 -2.39 -0.02 0.83 15 23 H 0.12 0.44 7.16 -2.39 -0.02 0.42 15 24 H 0.19 1.70 7.13 -2.39 -0.02 1.68 15 25 H 0.12 2.44 8.14 -2.39 -0.02 2.42 15 26 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 27 H 0.01 0.53 8.14 -2.38 -0.02 0.51 15 28 H 0.26 13.18 8.31 -92.71 -0.77 12.41 15 Total: -1.00 -70.78 261.91 7.49 -63.29 By element: Atomic # 1 Polarization: -7.99 SS G_CDS: 1.18 Total: -6.81 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 4.32 Total: -3.09 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -0.04 Total: -95.99 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.59 kcal Total: -70.78 7.49 -63.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618953804.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.462 kcal (2) G-P(sol) polarization free energy of solvation -70.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds