Wall clock time and date at job start Sun Mar 29 2020 22:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47261 * 2 1 4 4 C 1.36943 * 119.99768 * 275.42125 * 3 2 1 5 5 H 1.07999 * 119.99996 * 34.02084 * 4 3 2 6 6 C 1.38810 * 119.99658 * 214.01696 * 4 3 2 7 7 N 1.31621 * 120.00042 * 23.36624 * 6 4 3 8 8 Si 1.86795 * 119.99917 * 203.36662 * 6 4 3 9 9 H 1.48496 * 109.47430 * 59.99837 * 8 6 4 10 10 H 1.48500 * 109.47101 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46972 * 299.99747 * 8 6 4 12 12 C 1.46498 * 119.99963 * 95.41786 * 3 2 1 13 13 C 1.50694 * 109.47193 * 270.00202 * 12 3 2 14 14 C 1.38396 * 120.00029 * 94.72324 * 13 12 3 15 15 N 1.32129 * 119.99488 * 180.25212 * 14 13 12 16 16 C 1.32152 * 120.00351 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00096 * 180.02562 * 16 15 14 18 18 C 1.38352 * 120.00128 * 359.97438 * 16 15 14 19 19 N 1.32126 * 120.00358 * 274.99744 * 13 12 3 20 20 H 1.08999 * 109.47179 * 59.99837 * 1 2 3 21 21 H 1.09004 * 109.47579 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47099 * 299.99937 * 1 2 3 23 23 H 1.09004 * 109.47099 * 240.00063 * 2 1 3 24 24 H 1.08999 * 109.47179 * 120.00163 * 2 1 3 25 25 H 0.97004 * 119.99789 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.47111 * 150.00005 * 12 3 2 27 27 H 1.08997 * 109.47056 * 30.00449 * 12 3 2 28 28 H 1.07992 * 120.00144 * 0.25423 * 14 13 12 29 29 H 1.08994 * 109.46835 * 269.97513 * 17 16 15 30 30 H 1.08999 * 109.46986 * 29.97786 * 17 16 15 31 31 H 1.08994 * 109.47031 * 149.97437 * 17 16 15 32 32 H 1.08000 * 119.99675 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1409 2.0641 -1.1807 5 1 1.4398 1.8863 -1.9827 6 6 3.1664 2.9849 -1.3466 7 7 4.2580 2.8928 -0.6170 8 14 2.9970 4.3547 -2.6052 9 1 1.8153 5.1899 -2.2719 10 1 4.2199 5.1969 -2.5878 11 1 2.8214 3.7658 -3.9571 12 6 2.3755 2.0319 1.2630 13 6 1.1644 2.7265 1.8303 14 6 0.3702 2.0817 2.7625 15 7 -0.6945 2.6889 3.2560 16 6 -1.0012 3.9116 2.8593 17 6 -2.2152 4.6043 3.4227 18 6 -0.2073 4.5561 1.9274 19 7 0.8576 3.9489 1.4338 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 4.9744 3.5365 -0.7328 26 1 3.1636 2.7634 1.0848 27 1 2.7290 1.2821 1.9707 28 1 0.6207 1.0824 3.0864 29 1 -3.0820 4.3817 2.8005 30 1 -2.3964 4.2514 4.4380 31 1 -2.0452 5.6808 3.4372 32 1 -0.4578 5.5555 1.6035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685972147.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:58 Heat of formation + Delta-G solvation = 61.010205 kcal Electronic energy + Delta-G solvation = -15210.120365 eV Core-core repulsion = 12785.423946 eV Total energy + Delta-G solvation = -2424.696419 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.42284 -36.15442 -33.77435 -32.41103 -31.87232 -29.64954 -27.93189 -25.14941 -23.96003 -23.50149 -21.47607 -20.25361 -17.07831 -16.81874 -15.59492 -15.22354 -14.69847 -14.56770 -13.75729 -13.70023 -13.00809 -12.64116 -12.34913 -12.33515 -12.23832 -11.71789 -11.21143 -11.10347 -10.84305 -10.69996 -10.60203 -10.36959 -10.17402 -10.04689 -9.91249 -8.51654 -8.36805 -8.32203 -6.69670 -5.83293 -3.35107 1.41052 1.83269 3.40739 3.46081 3.52394 4.28581 4.52548 4.56123 4.93157 5.08695 5.25473 5.38931 5.52974 5.58908 5.68916 5.86793 5.92500 5.97063 6.07658 6.20689 6.31006 6.37864 6.55049 6.62442 6.82990 7.02929 7.11298 7.55228 7.79453 7.97497 8.42584 8.60823 9.11184 9.76758 10.29146 11.17635 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026032 B = 0.010843 C = 0.008852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.342340 B = 2581.740099 C = 3162.272312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.140 3.860 3 N -0.569 5.569 4 C -0.257 4.257 5 H 0.059 0.941 6 C 0.023 3.977 7 N -0.881 5.881 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.290 1.290 11 H -0.284 1.284 12 C 0.180 3.820 13 C 0.091 3.909 14 C 0.041 3.959 15 N -0.447 5.447 16 C 0.035 3.965 17 C -0.090 4.090 18 C 0.049 3.951 19 N -0.415 5.415 20 H 0.047 0.953 21 H 0.039 0.961 22 H 0.042 0.958 23 H 0.050 0.950 24 H 0.038 0.962 25 H 0.257 0.743 26 H 0.119 0.881 27 H 0.047 0.953 28 H 0.157 0.843 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.678 0.511 6.233 9.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 N -0.288 5.288 4 C -0.386 4.386 5 H 0.077 0.923 6 C -0.178 4.178 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.216 1.216 11 H -0.210 1.210 12 C 0.052 3.948 13 C -0.052 4.052 14 C -0.121 4.121 15 N -0.162 5.162 16 C -0.106 4.106 17 C -0.148 4.148 18 C -0.111 4.111 19 N -0.130 5.130 20 H 0.066 0.934 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.136 0.864 27 H 0.065 0.935 28 H 0.174 0.826 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.461 0.571 6.182 9.706 hybrid contribution -0.341 0.806 -0.659 1.095 sum -7.802 1.376 5.522 9.657 Atomic orbital electron populations 1.22373 1.00097 0.99178 1.01207 1.20915 0.91632 0.86705 0.99308 1.43744 1.75291 1.07891 1.01860 1.18895 1.07741 1.19510 0.92430 0.92297 1.24985 0.93903 1.00721 0.98173 1.69939 1.04454 1.35620 1.42200 0.86431 0.77291 0.82596 0.80836 1.20584 1.21593 1.20978 1.20100 0.91885 0.96667 0.86178 1.24063 1.00229 0.90264 0.90672 1.23496 0.91842 1.00580 0.96224 1.68103 1.15651 1.08505 1.23980 1.22011 0.98551 0.92476 0.97546 1.20520 0.93875 0.99135 1.01290 1.23588 0.92158 1.00824 0.94559 1.68518 1.14370 1.09416 1.20721 0.93364 0.94222 0.93938 0.93155 0.94318 0.93302 0.86373 0.93460 0.82614 0.90990 0.91016 0.91004 0.82871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 10.21 37.16 0.38 -2.79 16 2 C 0.14 2.90 6.44 -4.04 -0.03 2.87 16 3 N -0.57 -13.92 2.44 -174.61 -0.43 -14.34 16 4 C -0.26 -6.99 9.48 -15.06 -0.14 -7.13 16 5 H 0.06 1.63 7.93 -52.49 -0.42 1.21 16 6 C 0.02 0.64 4.94 -17.43 -0.09 0.55 16 7 N -0.88 -24.91 11.34 55.49 0.63 -24.28 16 8 Si 0.90 22.08 29.61 -169.99 -5.03 17.05 16 9 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.18 4.17 5.66 -5.20 -0.03 4.14 16 13 C 0.09 1.95 6.29 -82.41 -0.52 1.44 16 14 C 0.04 0.77 9.38 -17.37 -0.16 0.60 16 15 N -0.45 -8.19 10.42 -9.28 -0.10 -8.28 16 16 C 0.03 0.58 6.79 -82.41 -0.56 0.02 16 17 C -0.09 -1.08 10.19 36.01 0.37 -0.71 16 18 C 0.05 0.90 10.88 -17.37 -0.19 0.71 16 19 N -0.42 -9.25 10.42 -9.29 -0.10 -9.35 16 20 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.04 0.81 6.50 -51.93 -0.34 0.47 16 23 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 24 H 0.04 0.72 7.83 -51.93 -0.41 0.31 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 26 H 0.12 3.15 5.33 -51.93 -0.28 2.88 16 27 H 0.05 0.98 7.77 -51.93 -0.40 0.58 16 28 H 0.16 2.57 8.06 -52.49 -0.42 2.14 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 32 H 0.15 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 274.35 15.07 4.13 4.13 Total: -1.00 -30.25 274.35 -6.21 -36.46 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -4.35 Total: -1.09 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -0.97 Total: -0.29 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.01 Total: -56.26 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.25 -6.21 -36.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972147.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.472 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds