Wall clock time and date at job start Sun Mar 29 2020 22:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47261 * 2 1 4 4 C 1.36943 * 119.99768 * 275.42125 * 3 2 1 5 5 H 1.07999 * 119.99996 * 34.02084 * 4 3 2 6 6 C 1.38810 * 119.99658 * 214.01696 * 4 3 2 7 7 N 1.31621 * 120.00042 * 23.36624 * 6 4 3 8 8 Si 1.86795 * 119.99917 * 203.36662 * 6 4 3 9 9 H 1.48496 * 109.47430 * 59.99837 * 8 6 4 10 10 H 1.48500 * 109.47101 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46972 * 299.99747 * 8 6 4 12 12 C 1.46498 * 119.99963 * 95.41786 * 3 2 1 13 13 C 1.50694 * 109.47193 * 270.00202 * 12 3 2 14 14 C 1.38396 * 120.00029 * 94.72324 * 13 12 3 15 15 N 1.32129 * 119.99488 * 180.25212 * 14 13 12 16 16 C 1.32152 * 120.00351 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00096 * 180.02562 * 16 15 14 18 18 C 1.38352 * 120.00128 * 359.97438 * 16 15 14 19 19 N 1.32126 * 120.00358 * 274.99744 * 13 12 3 20 20 H 1.08999 * 109.47179 * 59.99837 * 1 2 3 21 21 H 1.09004 * 109.47579 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47099 * 299.99937 * 1 2 3 23 23 H 1.09004 * 109.47099 * 240.00063 * 2 1 3 24 24 H 1.08999 * 109.47179 * 120.00163 * 2 1 3 25 25 H 0.97004 * 119.99789 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.47111 * 150.00005 * 12 3 2 27 27 H 1.08997 * 109.47056 * 30.00449 * 12 3 2 28 28 H 1.07992 * 120.00144 * 0.25423 * 14 13 12 29 29 H 1.08994 * 109.46835 * 269.97513 * 17 16 15 30 30 H 1.08999 * 109.46986 * 29.97786 * 17 16 15 31 31 H 1.08994 * 109.47031 * 149.97437 * 17 16 15 32 32 H 1.08000 * 119.99675 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1409 2.0641 -1.1807 5 1 1.4398 1.8863 -1.9827 6 6 3.1664 2.9849 -1.3466 7 7 4.2580 2.8928 -0.6170 8 14 2.9970 4.3547 -2.6052 9 1 1.8153 5.1899 -2.2719 10 1 4.2199 5.1969 -2.5878 11 1 2.8214 3.7658 -3.9571 12 6 2.3755 2.0319 1.2630 13 6 1.1644 2.7265 1.8303 14 6 0.3702 2.0817 2.7625 15 7 -0.6945 2.6889 3.2560 16 6 -1.0012 3.9116 2.8593 17 6 -2.2152 4.6043 3.4227 18 6 -0.2073 4.5561 1.9274 19 7 0.8576 3.9489 1.4338 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 4.9744 3.5365 -0.7328 26 1 3.1636 2.7634 1.0848 27 1 2.7290 1.2821 1.9707 28 1 0.6207 1.0824 3.0864 29 1 -3.0820 4.3817 2.8005 30 1 -2.3964 4.2514 4.4380 31 1 -2.0452 5.6808 3.4372 32 1 -0.4578 5.5555 1.6035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685972147.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:58 Heat of formation + Delta-G solvation = 41.515520 kcal Electronic energy + Delta-G solvation = -15210.965718 eV Core-core repulsion = 12785.423946 eV Total energy + Delta-G solvation = -2425.541772 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.89310 -37.91604 -35.26693 -33.98501 -33.62298 -31.22409 -29.51386 -26.84335 -25.42984 -25.15759 -22.97525 -22.01730 -18.80053 -18.50822 -17.12717 -16.76901 -16.44213 -16.06981 -15.57376 -15.36605 -14.51439 -14.23528 -13.68040 -13.60140 -13.41936 -13.15908 -13.09909 -12.71829 -12.62601 -12.42282 -12.37011 -12.08693 -11.91592 -11.86625 -11.60228 -10.51973 -9.86350 -9.78379 -8.64087 -7.85204 -5.41816 -0.02130 0.35442 1.42592 1.47985 1.53746 2.50337 2.84298 3.23123 3.30853 3.51581 3.71466 3.80177 4.01766 4.31383 4.38381 4.49336 4.58352 4.75212 4.78246 4.80565 4.91625 4.94418 5.02608 5.17103 5.22723 5.48803 5.60920 5.65098 5.71622 6.41252 6.55686 7.09777 7.14164 7.83599 8.31768 9.11236 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026032 B = 0.010843 C = 0.008852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.342340 B = 2581.740099 C = 3162.272312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 N -0.586 5.586 4 C -0.262 4.262 5 H 0.046 0.954 6 C -0.018 4.018 7 N -0.907 5.907 8 Si 0.947 3.053 9 H -0.286 1.286 10 H -0.290 1.290 11 H -0.276 1.276 12 C 0.184 3.816 13 C 0.070 3.930 14 C 0.048 3.952 15 N -0.455 5.455 16 C 0.049 3.951 17 C -0.088 4.088 18 C 0.037 3.963 19 N -0.458 5.458 20 H 0.025 0.975 21 H 0.072 0.928 22 H 0.038 0.962 23 H 0.040 0.960 24 H 0.061 0.939 25 H 0.253 0.747 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.178 0.822 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.700 0.665 7.324 12.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.011 3.989 3 N -0.306 5.306 4 C -0.393 4.393 5 H 0.064 0.936 6 C -0.216 4.216 7 N -0.550 5.550 8 Si 0.775 3.225 9 H -0.213 1.213 10 H -0.215 1.215 11 H -0.202 1.202 12 C 0.056 3.944 13 C -0.072 4.072 14 C -0.113 4.113 15 N -0.171 5.171 16 C -0.092 4.092 17 C -0.145 4.145 18 C -0.124 4.124 19 N -0.174 5.174 20 H 0.044 0.956 21 H 0.091 0.909 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.195 0.805 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -9.498 0.699 7.284 11.990 hybrid contribution 0.164 0.786 -0.885 1.195 sum -9.334 1.485 6.399 11.414 Atomic orbital electron populations 1.22187 0.98390 1.00854 0.99827 1.21052 0.92845 0.85096 0.99927 1.43896 1.75833 1.09345 1.01494 1.18959 1.07045 1.19887 0.93363 0.93602 1.25504 0.93872 1.02358 0.99902 1.70040 1.04952 1.36199 1.43809 0.85676 0.76674 0.80513 0.79591 1.21305 1.21549 1.20212 1.19864 0.91931 0.96345 0.86214 1.23669 1.00175 0.90795 0.92602 1.23663 0.91336 1.01184 0.95079 1.68270 1.15403 1.09289 1.24157 1.22810 0.98959 0.91726 0.95670 1.20691 0.91879 1.00316 1.01653 1.24118 0.91426 1.01997 0.94814 1.68373 1.16471 1.10321 1.22211 0.95583 0.90916 0.94332 0.94127 0.92035 0.93810 0.90018 0.91793 0.80497 0.89358 0.90080 0.88242 0.80037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.51 10.21 71.98 0.73 -4.77 16 2 C 0.14 5.50 6.44 86.38 0.56 6.06 16 3 N -0.59 -28.87 2.44 -706.36 -1.73 -30.60 16 4 C -0.26 -14.58 9.48 84.03 0.80 -13.78 16 5 H 0.05 2.61 7.93 -2.91 -0.02 2.59 16 6 C -0.02 -1.02 4.94 84.86 0.42 -0.60 16 7 N -0.91 -52.72 11.34 21.65 0.25 -52.48 16 8 Si 0.95 46.19 29.61 68.60 2.03 48.22 16 9 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 10 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 C 0.18 8.64 5.66 85.63 0.48 9.13 16 13 C 0.07 2.97 6.29 42.55 0.27 3.24 16 14 C 0.05 1.72 9.38 84.69 0.79 2.51 16 15 N -0.46 -15.50 10.42 -183.29 -1.91 -17.41 16 16 C 0.05 1.51 6.79 42.54 0.29 1.80 16 17 C -0.09 -1.71 10.19 71.24 0.73 -0.99 16 18 C 0.04 1.29 10.88 84.67 0.92 2.21 16 19 N -0.46 -20.28 10.42 -183.29 -1.91 -22.19 16 20 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 21 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 22 H 0.04 1.40 6.50 -2.39 -0.02 1.38 16 23 H 0.04 1.69 8.08 -2.39 -0.02 1.67 16 24 H 0.06 2.18 7.83 -2.39 -0.02 2.16 16 25 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 26 H 0.08 4.51 5.33 -2.39 -0.01 4.49 16 27 H 0.06 2.66 7.77 -2.39 -0.02 2.64 16 28 H 0.18 5.42 8.06 -2.91 -0.02 5.40 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.10 1.44 8.09 -2.39 -0.02 1.42 16 32 H 0.18 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -66.12 274.35 3.82 -62.30 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 1.10 Total: 7.36 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 5.99 Total: 4.80 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -5.30 Total: -122.68 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -66.12 3.82 -62.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972147.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.818 kcal (2) G-P(sol) polarization free energy of solvation -66.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds