Wall clock time and date at job start Sun Mar 29 2020 22:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38387 * 120.00165 * 2 1 4 4 N 1.32118 * 120.00091 * 179.97438 * 3 2 1 5 5 C 1.32154 * 119.99692 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99920 * 179.72668 * 5 4 3 7 7 N 1.46904 * 109.47147 * 275.00198 * 6 5 4 8 8 C 1.46907 * 110.99743 * 66.04800 * 7 6 5 9 9 C 1.46896 * 110.99922 * 189.99615 * 7 6 5 10 10 C 1.50699 * 109.47032 * 170.00110 * 9 7 6 11 11 H 1.07998 * 120.00400 * 0.02562 * 10 9 7 12 12 C 1.37879 * 119.99966 * 180.02562 * 10 9 7 13 13 N 1.31515 * 120.00115 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00024 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47230 * 59.99599 * 14 12 10 16 16 H 1.48498 * 109.47046 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46580 * 299.99889 * 14 12 10 18 18 C 1.38342 * 120.00353 * 0.02562 * 5 4 3 19 19 N 1.32124 * 120.00069 * 179.97438 * 2 1 3 20 20 H 1.09003 * 109.46587 * 90.00880 * 1 2 3 21 21 H 1.08998 * 109.47245 * 210.00431 * 1 2 3 22 22 H 1.08997 * 109.47657 * 330.01020 * 1 2 3 23 23 H 1.08001 * 119.99856 * 359.97438 * 3 2 1 24 24 H 1.08999 * 109.47209 * 35.00003 * 6 5 4 25 25 H 1.08994 * 109.47427 * 155.00146 * 6 5 4 26 26 H 1.08995 * 109.47098 * 59.99666 * 8 7 6 27 27 H 1.09002 * 109.46648 * 180.02562 * 8 7 6 28 28 H 1.08994 * 109.46635 * 299.99688 * 8 7 6 29 29 H 1.09009 * 109.47506 * 290.00191 * 9 7 6 30 30 H 1.08999 * 109.47391 * 49.99870 * 9 7 6 31 31 H 0.96996 * 119.99979 * 179.97438 * 13 12 10 32 32 H 1.08001 * 119.99992 * 179.97438 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5202 1.1984 0.0005 5 6 4.1809 0.0539 0.0015 6 6 5.6879 0.0538 -0.0041 7 7 6.1724 0.1703 -1.3860 8 6 5.8208 1.4767 -1.9587 9 6 7.6209 -0.0631 -1.4574 10 6 8.0404 -0.1796 -2.9002 11 1 7.3047 -0.0888 -3.6855 12 6 9.3636 -0.4020 -3.2175 13 7 10.2598 -0.5120 -2.2612 14 14 9.8838 -0.5457 -5.0059 15 1 9.5498 0.7121 -5.7212 16 1 11.3479 -0.7830 -5.0781 17 1 9.1669 -1.6811 -5.6401 18 6 3.4891 -1.1442 0.0015 19 7 2.1677 -1.1442 0.0005 20 1 -0.3632 -0.0002 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3634 0.8900 0.5136 23 1 1.6590 2.1338 -0.0004 24 1 6.0535 0.8974 0.5814 25 1 6.0528 -0.8762 0.4316 26 1 6.2731 2.2686 -1.3618 27 1 6.1910 1.5361 -2.9823 28 1 4.7373 1.5942 -1.9572 29 1 8.1468 0.7708 -0.9923 30 1 7.8666 -0.9859 -0.9320 31 1 11.1905 -0.6689 -2.4845 32 1 4.0291 -2.0795 0.0020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685972475.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:25 Heat of formation + Delta-G solvation = 47.729797 kcal Electronic energy + Delta-G solvation = -14492.479321 eV Core-core repulsion = 12067.207020 eV Total energy + Delta-G solvation = -2425.272301 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.00113 -36.74354 -34.28367 -32.99107 -32.32579 -29.30475 -27.09070 -26.03721 -24.46543 -23.78872 -21.81095 -20.28801 -17.60179 -16.52374 -15.95159 -15.54869 -15.29316 -14.67074 -14.18803 -13.84829 -13.58094 -12.78745 -12.74446 -12.60092 -12.06293 -11.91611 -11.54306 -11.34820 -11.10062 -10.97786 -10.81152 -10.70868 -10.40978 -9.92642 -9.32001 -8.92000 -8.85074 -8.43963 -7.31297 -6.03770 -4.05145 0.91229 1.28916 3.33817 3.37577 3.40786 3.76911 4.11975 4.32277 4.43373 4.60087 4.82348 5.13596 5.18823 5.30678 5.34330 5.40186 5.50762 5.62580 5.83043 5.99181 6.07711 6.26735 6.42016 6.53410 6.81510 7.22142 7.30581 7.44622 7.76433 7.95229 8.03241 8.15464 8.49781 9.01715 9.58932 11.07114 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.055531 B = 0.005525 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.101185 B = 5066.943037 C = 5133.126911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.060 3.940 3 C 0.048 3.952 4 N -0.432 5.432 5 C 0.098 3.902 6 C 0.102 3.898 7 N -0.535 5.535 8 C 0.041 3.959 9 C 0.193 3.807 10 C -0.508 4.508 11 H 0.063 0.937 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.899 3.101 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.072 3.928 19 N -0.443 5.443 20 H 0.078 0.922 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.163 0.837 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.015 0.985 27 H 0.072 0.928 28 H 0.047 0.953 29 H -0.006 1.006 30 H 0.032 0.968 31 H 0.262 0.738 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.479 1.911 5.384 16.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.080 4.080 3 C -0.112 4.112 4 N -0.147 5.147 5 C -0.042 4.042 6 C -0.028 4.028 7 N -0.260 5.260 8 C -0.108 4.108 9 C 0.069 3.931 10 C -0.547 4.547 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.727 3.273 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.089 4.089 19 N -0.158 5.158 20 H 0.097 0.903 21 H 0.095 0.905 22 H 0.094 0.906 23 H 0.180 0.820 24 H 0.064 0.936 25 H 0.107 0.893 26 H 0.033 0.967 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.012 0.988 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -15.485 1.518 5.135 16.384 hybrid contribution 0.834 0.563 -0.500 1.123 sum -14.651 2.081 4.634 15.507 Atomic orbital electron populations 1.20620 0.88159 1.03467 1.03194 1.22234 0.98221 0.89989 0.97569 1.23542 0.90873 0.98897 0.97903 1.68334 1.08330 1.29848 1.08150 1.22378 0.98447 0.89243 0.94151 1.20943 0.86475 1.02135 0.93202 1.62196 1.19244 1.30578 1.13995 1.22212 0.98928 0.89137 1.00519 1.19768 0.79376 0.96094 0.97890 1.21098 0.92865 1.48831 0.91880 0.91929 1.24974 0.96513 0.95436 0.97582 1.69944 1.02160 1.49741 1.31980 0.86546 0.77270 0.78663 0.84854 1.20283 1.21315 1.20150 1.23592 0.90007 0.99666 0.95585 1.68279 1.08953 1.29261 1.09319 0.90297 0.90475 0.90562 0.81968 0.93596 0.89266 0.96682 0.90948 0.93448 0.98823 0.94981 0.92825 0.81211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.19 36.01 0.37 -0.44 16 2 C 0.06 0.77 6.79 -82.41 -0.56 0.21 16 3 C 0.05 0.63 10.88 -17.37 -0.19 0.44 16 4 N -0.43 -6.98 9.02 -9.29 -0.08 -7.06 16 5 C 0.10 1.63 5.69 -82.41 -0.47 1.16 16 6 C 0.10 1.86 5.30 -4.97 -0.03 1.83 16 7 N -0.54 -11.77 4.74 -245.82 -1.17 -12.94 16 8 C 0.04 0.85 9.07 60.07 0.55 1.40 16 9 C 0.19 5.02 4.72 -4.98 -0.02 4.99 16 10 C -0.51 -14.30 8.46 -34.44 -0.29 -14.59 16 11 H 0.06 1.75 7.12 -52.49 -0.37 1.38 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 14 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.07 1.10 10.86 -17.38 -0.19 0.91 16 19 N -0.44 -6.58 10.42 -9.29 -0.10 -6.68 16 20 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 23 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 24 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 25 H 0.09 1.49 7.84 -51.93 -0.41 1.08 16 26 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 1.60 6.76 -51.93 -0.35 1.25 16 28 H 0.05 0.92 6.36 -51.93 -0.33 0.59 16 29 H -0.01 -0.17 8.12 -51.92 -0.42 -0.59 16 30 H 0.03 0.87 7.93 -51.93 -0.41 0.45 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 274.94 15.07 4.14 4.14 Total: -1.00 -31.41 274.94 -6.81 -38.21 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -4.39 Total: -3.90 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -0.93 Total: -2.59 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.61 Total: -52.52 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.41 -6.81 -38.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972475.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.943 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds