Wall clock time and date at job start Sun Mar 29 2020 22:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38387 * 120.00165 * 2 1 4 4 N 1.32118 * 120.00091 * 179.97438 * 3 2 1 5 5 C 1.32154 * 119.99692 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99920 * 179.72668 * 5 4 3 7 7 N 1.46904 * 109.47147 * 275.00198 * 6 5 4 8 8 C 1.46907 * 110.99743 * 66.04800 * 7 6 5 9 9 C 1.46896 * 110.99922 * 189.99615 * 7 6 5 10 10 C 1.50699 * 109.47032 * 170.00110 * 9 7 6 11 11 H 1.07998 * 120.00400 * 0.02562 * 10 9 7 12 12 C 1.37879 * 119.99966 * 180.02562 * 10 9 7 13 13 N 1.31515 * 120.00115 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00024 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47230 * 59.99599 * 14 12 10 16 16 H 1.48498 * 109.47046 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46580 * 299.99889 * 14 12 10 18 18 C 1.38342 * 120.00353 * 0.02562 * 5 4 3 19 19 N 1.32124 * 120.00069 * 179.97438 * 2 1 3 20 20 H 1.09003 * 109.46587 * 90.00880 * 1 2 3 21 21 H 1.08998 * 109.47245 * 210.00431 * 1 2 3 22 22 H 1.08997 * 109.47657 * 330.01020 * 1 2 3 23 23 H 1.08001 * 119.99856 * 359.97438 * 3 2 1 24 24 H 1.08999 * 109.47209 * 35.00003 * 6 5 4 25 25 H 1.08994 * 109.47427 * 155.00146 * 6 5 4 26 26 H 1.08995 * 109.47098 * 59.99666 * 8 7 6 27 27 H 1.09002 * 109.46648 * 180.02562 * 8 7 6 28 28 H 1.08994 * 109.46635 * 299.99688 * 8 7 6 29 29 H 1.09009 * 109.47506 * 290.00191 * 9 7 6 30 30 H 1.08999 * 109.47391 * 49.99870 * 9 7 6 31 31 H 0.96996 * 119.99979 * 179.97438 * 13 12 10 32 32 H 1.08001 * 119.99992 * 179.97438 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5202 1.1984 0.0005 5 6 4.1809 0.0539 0.0015 6 6 5.6879 0.0538 -0.0041 7 7 6.1724 0.1703 -1.3860 8 6 5.8208 1.4767 -1.9587 9 6 7.6209 -0.0631 -1.4574 10 6 8.0404 -0.1796 -2.9002 11 1 7.3047 -0.0888 -3.6855 12 6 9.3636 -0.4020 -3.2175 13 7 10.2598 -0.5120 -2.2612 14 14 9.8838 -0.5457 -5.0059 15 1 9.5498 0.7121 -5.7212 16 1 11.3479 -0.7830 -5.0781 17 1 9.1669 -1.6811 -5.6401 18 6 3.4891 -1.1442 0.0015 19 7 2.1677 -1.1442 0.0005 20 1 -0.3632 -0.0002 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3634 0.8900 0.5136 23 1 1.6590 2.1338 -0.0004 24 1 6.0535 0.8974 0.5814 25 1 6.0528 -0.8762 0.4316 26 1 6.2731 2.2686 -1.3618 27 1 6.1910 1.5361 -2.9823 28 1 4.7373 1.5942 -1.9572 29 1 8.1468 0.7708 -0.9923 30 1 7.8666 -0.9859 -0.9320 31 1 11.1905 -0.6689 -2.4845 32 1 4.0291 -2.0795 0.0020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685972475.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:24 Heat of formation + Delta-G solvation = 25.313016 kcal Electronic energy + Delta-G solvation = -14493.451385 eV Core-core repulsion = 12067.207020 eV Total energy + Delta-G solvation = -2426.244365 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.11971 -38.41275 -35.55135 -34.65075 -33.77951 -30.60230 -29.02123 -27.44188 -25.58601 -25.44370 -23.20341 -21.98380 -18.75434 -18.54650 -17.21654 -16.88668 -16.59723 -16.37745 -15.75630 -15.46567 -15.06817 -14.08350 -13.81453 -13.66108 -13.53542 -13.27532 -13.12316 -12.92386 -12.63365 -12.58669 -12.52835 -12.34257 -11.98991 -11.90379 -11.38396 -10.61625 -10.02728 -9.99964 -9.11607 -8.20690 -6.30679 -0.18589 0.16692 1.41817 1.44705 1.52733 2.39921 2.63635 3.06985 3.12143 3.25435 3.50646 3.54080 3.80225 4.11574 4.21692 4.48558 4.51217 4.58943 4.65678 4.74764 4.81206 4.90508 5.03144 5.14662 5.16670 5.24459 5.50520 5.62856 6.00732 6.20407 6.36825 6.52526 6.83406 6.85418 7.38611 8.90207 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.055531 B = 0.005525 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.101185 B = 5066.943037 C = 5133.126911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.068 3.932 3 C 0.049 3.951 4 N -0.454 5.454 5 C 0.075 3.925 6 C 0.106 3.894 7 N -0.541 5.541 8 C 0.051 3.949 9 C 0.208 3.792 10 C -0.527 4.527 11 H 0.060 0.940 12 C 0.005 3.995 13 N -0.932 5.932 14 Si 0.968 3.032 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.269 1.269 18 C 0.066 3.934 19 N -0.460 5.460 20 H 0.092 0.908 21 H 0.078 0.922 22 H 0.107 0.893 23 H 0.202 0.798 24 H 0.039 0.961 25 H 0.097 0.903 26 H 0.011 0.989 27 H 0.056 0.944 28 H 0.064 0.936 29 H -0.034 1.034 30 H 0.015 0.985 31 H 0.265 0.735 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.542 2.262 4.709 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.074 4.074 3 C -0.112 4.112 4 N -0.170 5.170 5 C -0.064 4.064 6 C -0.023 4.023 7 N -0.266 5.266 8 C -0.097 4.097 9 C 0.082 3.918 10 C -0.565 4.565 11 H 0.078 0.922 12 C -0.193 4.193 13 N -0.573 5.573 14 Si 0.793 3.207 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.194 1.194 18 C -0.093 4.093 19 N -0.176 5.176 20 H 0.110 0.890 21 H 0.097 0.903 22 H 0.125 0.875 23 H 0.218 0.782 24 H 0.058 0.942 25 H 0.115 0.885 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.082 0.918 29 H -0.016 1.016 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -17.547 1.856 4.469 18.202 hybrid contribution 1.307 0.497 -0.217 1.415 sum -16.240 2.353 4.252 16.951 Atomic orbital electron populations 1.20788 0.84790 1.05141 1.04468 1.23010 1.00315 0.89241 0.94790 1.24203 0.89812 1.00733 0.96480 1.68255 1.10125 1.29832 1.08747 1.21979 0.97198 0.90178 0.96998 1.20889 0.88258 1.02269 0.90844 1.62079 1.16519 1.31238 1.16758 1.22095 0.99736 0.88537 0.99343 1.19431 0.81691 0.94072 0.96594 1.21395 0.93291 1.49050 0.92757 0.92175 1.25866 0.96453 0.94785 1.02213 1.70063 1.02560 1.50356 1.34271 0.85451 0.77025 0.78997 0.79236 1.19415 1.20649 1.19369 1.23678 0.90541 0.99565 0.95545 1.68376 1.08552 1.30511 1.10163 0.88957 0.90287 0.87471 0.78158 0.94240 0.88476 0.97041 0.92519 0.91763 1.01627 0.96700 0.92574 0.80441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 10.19 71.24 0.73 -0.49 16 2 C 0.07 1.53 6.79 42.55 0.29 1.82 16 3 C 0.05 1.14 10.88 84.69 0.92 2.06 16 4 N -0.45 -14.08 9.02 -183.30 -1.65 -15.73 16 5 C 0.08 2.48 5.69 42.54 0.24 2.72 16 6 C 0.11 3.97 5.30 85.56 0.45 4.42 16 7 N -0.54 -24.31 4.74 -931.64 -4.42 -28.73 16 8 C 0.05 2.17 9.07 127.69 1.16 3.33 16 9 C 0.21 11.17 4.72 85.56 0.40 11.57 16 10 C -0.53 -30.16 8.46 25.60 0.22 -29.94 16 11 H 0.06 3.40 7.12 -2.91 -0.02 3.38 16 12 C 0.01 0.30 5.46 84.66 0.46 0.76 16 13 N -0.93 -55.97 13.29 21.45 0.28 -55.69 16 14 Si 0.97 44.44 29.54 68.60 2.03 46.46 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 18 C 0.07 1.97 10.86 84.67 0.92 2.89 16 19 N -0.46 -12.94 10.42 -183.30 -1.91 -14.85 16 20 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 21 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.11 0.75 8.09 -2.39 -0.02 0.73 16 23 H 0.20 2.92 8.06 -2.91 -0.02 2.90 16 24 H 0.04 1.50 8.12 -2.39 -0.02 1.48 16 25 H 0.10 3.36 7.84 -2.39 -0.02 3.34 16 26 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.06 2.53 6.76 -2.39 -0.02 2.52 16 28 H 0.06 2.48 6.36 -2.39 -0.02 2.46 16 29 H -0.03 -1.98 8.12 -2.38 -0.02 -2.00 16 30 H 0.01 0.84 7.93 -2.39 -0.02 0.82 16 31 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 32 H 0.18 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -67.78 274.94 1.22 -66.57 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: 1.10 Total: 2.82 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 5.79 Total: -0.85 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -7.70 Total: -115.00 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -67.78 1.22 -66.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972475.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.881 kcal (2) G-P(sol) polarization free energy of solvation -67.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds