Wall clock time and date at job start Sun Mar 29 2020 22:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46501 * 109.46976 * 2 1 4 4 C 1.36941 * 119.99783 * 92.41990 * 3 2 1 5 5 H 1.08003 * 119.99771 * 33.88247 * 4 3 2 6 6 C 1.38813 * 120.00025 * 213.60667 * 4 3 2 7 7 N 1.31619 * 119.99876 * 23.43160 * 6 4 3 8 8 Si 1.86803 * 119.99800 * 203.42814 * 6 4 3 9 9 H 1.48494 * 109.47090 * 60.00065 * 8 6 4 10 10 H 1.48498 * 109.46590 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46995 * 300.00127 * 8 6 4 12 12 C 1.46492 * 120.00340 * 272.42218 * 3 2 1 13 13 C 1.50705 * 109.47432 * 270.00035 * 12 3 2 14 14 N 1.31808 * 119.12031 * 89.99316 * 13 12 3 15 15 C 1.32323 * 120.81746 * 180.02562 * 14 13 12 16 16 C 1.38624 * 119.09988 * 0.02562 * 15 14 13 17 17 C 1.38576 * 118.40145 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.44762 * 180.02562 * 17 16 15 19 19 N 1.31781 * 119.12353 * 269.73667 * 13 12 3 20 20 H 1.09001 * 109.47205 * 59.99490 * 1 2 3 21 21 H 1.08998 * 109.46893 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46949 * 300.00216 * 1 2 3 23 23 H 1.08999 * 109.47055 * 240.00317 * 2 1 3 24 24 H 1.08996 * 109.46921 * 119.99858 * 2 1 3 25 25 H 0.97000 * 119.99736 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47162 * 30.00036 * 12 3 2 27 27 H 1.09003 * 109.47663 * 150.00114 * 12 3 2 28 28 H 1.07992 * 120.45016 * 179.97438 * 15 14 13 29 29 H 1.08003 * 120.79797 * 179.97438 * 16 15 14 30 30 H 1.08999 * 109.47588 * 89.99855 * 18 17 16 31 31 H 1.08998 * 109.46983 * 209.99785 * 18 17 16 32 32 H 1.09001 * 109.47047 * 329.99636 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2938 2.0101 1.1849 5 1 2.6849 1.4449 2.0180 6 6 2.0757 3.3749 1.3134 7 7 1.2115 3.9802 0.5266 8 14 3.0087 4.3524 2.6032 9 1 4.4673 4.2448 2.3466 10 1 2.5977 5.7779 2.5369 11 1 2.7021 3.8115 3.9518 12 6 2.2120 2.0898 -1.2675 13 6 3.6168 1.8596 -1.7622 14 7 3.8594 0.8295 -2.5480 15 6 5.0803 0.5955 -3.0014 16 6 6.1095 1.4504 -2.6387 17 6 5.8155 2.5217 -1.8104 18 6 6.8990 3.4802 -1.3879 19 7 4.5689 2.6965 -1.4019 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.0589 4.9339 0.6166 26 1 1.5014 1.7162 -2.0048 27 1 2.0507 3.1570 -1.1156 28 1 5.2725 -0.2505 -3.6445 29 1 7.1164 1.2850 -2.9926 30 1 6.9655 4.2945 -2.1094 31 1 6.6625 3.8851 -0.4039 32 1 7.8528 2.9543 -1.3447 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687802234.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:22 Heat of formation + Delta-G solvation = 43.490758 kcal Electronic energy + Delta-G solvation = -15179.045732 eV Core-core repulsion = 12753.589613 eV Total energy + Delta-G solvation = -2425.456119 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.77480 -37.82329 -35.17347 -33.79009 -33.65117 -30.81564 -29.43389 -28.20662 -25.60437 -24.23403 -23.10765 -21.83300 -18.82634 -18.40723 -16.97902 -16.67396 -16.28971 -15.97884 -15.64419 -15.29507 -14.58627 -14.15315 -14.05385 -13.73678 -13.38321 -13.12274 -13.09343 -12.90374 -12.51709 -12.33521 -12.14171 -11.96159 -11.58325 -11.50311 -11.35185 -10.54392 -10.16554 -9.96412 -8.69931 -7.87140 -5.42100 0.12479 0.37576 1.43225 1.48643 1.54226 2.50200 2.90436 3.19017 3.35882 3.47711 3.74972 3.81333 4.25335 4.35717 4.42903 4.60977 4.66863 4.69745 4.73245 4.84911 4.89742 5.03413 5.08827 5.12640 5.27193 5.50126 5.58066 5.69520 5.75243 6.34986 6.43346 7.10394 7.47477 7.80197 8.31950 9.12403 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021187 B = 0.013120 C = 0.008901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.273331 B = 2133.612475 C = 3144.927285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.139 3.861 3 N -0.583 5.583 4 C -0.269 4.269 5 H 0.050 0.950 6 C -0.017 4.017 7 N -0.907 5.907 8 Si 0.951 3.049 9 H -0.285 1.285 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.206 3.794 13 C 0.306 3.694 14 N -0.547 5.547 15 C 0.132 3.868 16 C -0.235 4.235 17 C 0.141 3.859 18 C -0.099 4.099 19 N -0.540 5.540 20 H 0.036 0.964 21 H 0.070 0.930 22 H 0.031 0.969 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.254 0.746 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.201 0.799 29 H 0.185 0.815 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.077 -4.713 -6.666 12.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.014 3.986 3 N -0.303 5.303 4 C -0.399 4.399 5 H 0.067 0.933 6 C -0.215 4.215 7 N -0.550 5.550 8 Si 0.779 3.221 9 H -0.211 1.211 10 H -0.214 1.214 11 H -0.201 1.201 12 C 0.077 3.923 13 C 0.037 3.963 14 N -0.263 5.263 15 C -0.034 4.034 16 C -0.257 4.257 17 C -0.005 4.005 18 C -0.156 4.156 19 N -0.257 5.257 20 H 0.055 0.945 21 H 0.088 0.912 22 H 0.050 0.950 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.109 0.891 28 H 0.218 0.782 29 H 0.202 0.798 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.054 -4.405 -6.317 11.886 hybrid contribution 0.992 0.545 0.437 1.214 sum 10.046 -3.860 -5.880 12.263 Atomic orbital electron populations 1.22081 0.97904 1.00410 1.00285 1.21011 0.93237 0.85368 0.98943 1.43866 1.74034 1.11327 1.01097 1.19055 1.37050 0.92123 0.91665 0.93275 1.25553 0.97216 0.98847 0.99919 1.70030 1.32801 1.09953 1.42215 0.85608 0.79147 0.77795 0.79502 1.21110 1.21417 1.20109 1.19639 0.85150 1.01227 0.86305 1.24740 0.98536 0.85596 0.87458 1.68353 1.24835 1.20237 1.12898 1.23917 0.87308 0.97945 0.94212 1.22998 1.03572 0.97133 1.02022 1.22535 0.92422 0.94749 0.90841 1.20822 0.94878 0.97801 1.02102 1.68255 1.01935 1.31413 1.24073 0.94513 0.91163 0.94970 0.93232 0.94051 0.93712 0.93321 0.89070 0.78221 0.79820 0.88576 0.92404 0.87092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.01 10.24 71.99 0.74 -5.28 16 2 C 0.14 6.25 6.39 86.38 0.55 6.80 16 3 N -0.58 -30.74 2.44 -706.33 -1.72 -32.46 16 4 C -0.27 -15.40 9.47 84.03 0.80 -14.61 16 5 H 0.05 2.85 7.93 -2.91 -0.02 2.82 16 6 C -0.02 -0.97 4.94 84.86 0.42 -0.55 16 7 N -0.91 -53.82 11.32 21.65 0.25 -53.57 16 8 Si 0.95 46.52 29.61 68.60 2.03 48.55 16 9 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16 10 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 C 0.21 10.62 5.74 85.64 0.49 11.11 16 13 C 0.31 14.28 7.23 138.75 1.00 15.28 16 14 N -0.55 -21.96 10.33 -187.83 -1.94 -23.90 16 15 C 0.13 3.89 11.31 84.71 0.96 4.85 16 16 C -0.24 -6.31 9.86 22.44 0.22 -6.09 16 17 C 0.14 4.84 6.82 42.56 0.29 5.13 16 18 C -0.10 -2.52 10.22 71.24 0.73 -1.79 16 19 N -0.54 -24.73 10.27 -176.03 -1.81 -26.54 16 20 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 22 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.05 2.10 8.09 -2.39 -0.02 2.08 16 24 H 0.04 1.82 8.02 -2.39 -0.02 1.80 16 25 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.05 2.42 8.07 -2.39 -0.02 2.40 16 27 H 0.09 5.33 5.31 -2.39 -0.01 5.32 16 28 H 0.20 3.90 8.06 -2.91 -0.02 3.87 16 29 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 30 H 0.10 2.08 8.14 -2.39 -0.02 2.07 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.11 1.93 8.10 -2.39 -0.02 1.91 16 Total: -1.00 -69.89 278.16 4.09 -65.80 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 1.09 Total: 7.27 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 6.20 Total: 14.86 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -5.23 Total: -136.48 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -69.89 4.09 -65.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687802234.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.288 kcal (2) G-P(sol) polarization free energy of solvation -69.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds