Wall clock time and date at job start Sun Mar 29 2020 22:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00058 * 2 1 4 4 H 1.48495 * 109.47115 * 272.94449 * 3 2 1 5 5 H 1.48504 * 109.47119 * 32.94834 * 3 2 1 6 6 H 1.48510 * 109.47148 * 152.94346 * 3 2 1 7 7 C 1.38820 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99920 * 339.34575 * 7 2 1 9 9 N 1.36938 * 119.99836 * 159.34270 * 7 2 1 10 10 C 1.46924 * 120.63176 * 332.63050 * 9 7 2 11 11 C 1.53191 * 108.77670 * 233.58893 * 10 9 7 12 12 C 1.53039 * 109.30956 * 305.36559 * 11 10 9 13 13 C 1.50707 * 109.45769 * 181.38268 * 12 11 10 14 14 C 1.39869 * 126.04350 * 299.97261 * 13 12 11 15 15 N 1.30841 * 108.20123 * 179.73958 * 14 13 12 16 16 N 1.40086 * 108.20466 * 0.40755 * 15 14 13 17 17 H 0.96994 * 126.03553 * 179.85084 * 16 15 14 18 18 C 1.34949 * 107.92644 * 359.58672 * 16 15 14 19 19 C 1.53040 * 109.53059 * 61.37428 * 12 11 10 20 20 C 1.46927 * 120.62807 * 152.61028 * 9 7 2 21 21 H 0.97004 * 120.00069 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.58789 * 113.79861 * 10 9 7 23 23 H 1.08997 * 109.70481 * 353.44459 * 10 9 7 24 24 H 1.08997 * 109.50039 * 185.41566 * 11 10 9 25 25 H 1.09001 * 109.52869 * 65.33266 * 11 10 9 26 26 H 1.08993 * 109.46437 * 301.35815 * 12 11 10 27 27 H 1.07996 * 125.89775 * 359.97438 * 14 13 12 28 28 H 1.08000 * 126.12469 * 180.26120 * 18 16 15 29 29 H 1.09004 * 109.49606 * 58.57438 * 19 12 11 30 30 H 1.08998 * 109.49978 * 178.67676 * 19 12 11 31 31 H 1.08994 * 109.58558 * 246.19623 * 20 9 7 32 32 H 1.09000 * 109.58331 * 6.48112 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4354 2.0823 -1.3982 5 1 1.4801 2.6338 0.7615 6 1 3.5775 1.4229 0.6369 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1076 0.3290 9 7 3.3136 -1.2401 -0.4189 10 6 3.8173 -0.2583 -1.3891 11 6 4.4621 -1.0076 -2.5593 12 6 5.5288 -1.9641 -2.0216 13 6 6.1890 -2.6783 -3.1728 14 6 5.5502 -3.5016 -4.1058 15 7 6.4491 -3.9338 -4.9526 16 7 7.6917 -3.4058 -4.5792 17 1 8.5367 -3.5624 -5.0290 18 6 7.5047 -2.6364 -3.4865 19 6 4.8749 -2.9899 -1.0929 20 6 4.2350 -2.2631 0.0942 21 1 -0.4850 0.8401 0.0004 22 1 4.5596 0.3804 -0.9106 23 1 2.9923 0.3521 -1.7562 24 1 4.9246 -0.2919 -3.2390 25 1 3.6998 -1.5756 -3.0927 26 1 6.2779 -1.3984 -1.4676 27 1 4.4963 -3.7366 -4.1261 28 1 8.2682 -2.0856 -2.9573 29 1 4.1083 -3.5390 -1.6397 30 1 5.6312 -3.6852 -0.7287 31 1 5.0115 -1.7878 0.6935 32 1 3.6844 -2.9758 0.7081 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687802315.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:17 Heat of formation + Delta-G solvation = 68.905279 kcal Electronic energy + Delta-G solvation = -15110.072121 eV Core-core repulsion = 12685.718058 eV Total energy + Delta-G solvation = -2424.354063 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.09521 -39.25880 -35.35096 -33.31063 -32.12114 -31.79161 -30.19814 -26.71396 -24.28841 -23.62465 -22.95647 -21.28518 -20.52099 -18.90362 -18.18050 -17.11813 -15.86455 -15.48532 -15.43316 -15.16078 -15.13422 -14.77435 -14.42212 -14.03860 -13.72795 -13.43218 -13.02316 -12.53388 -12.37399 -12.14154 -11.94300 -11.58516 -11.32545 -11.27165 -11.12112 -10.62856 -10.51169 -9.29440 -8.85881 -8.12421 -5.42673 1.05129 1.33436 1.43905 1.53799 1.89553 2.16148 2.46145 3.10888 3.43657 3.80578 4.06159 4.18834 4.26843 4.46172 4.51514 4.61278 4.67839 4.77855 4.81907 4.92355 5.04932 5.17326 5.24295 5.31185 5.36125 5.38529 5.70679 5.77311 5.92905 6.17397 6.54442 6.79172 6.98656 7.69495 8.09975 9.07860 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051146 B = 0.007389 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.319898 B = 3788.496803 C = 3889.784869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.039 4.039 3 Si 0.949 3.051 4 H -0.276 1.276 5 H -0.313 1.313 6 H -0.257 1.257 7 C -0.246 4.246 8 H 0.049 0.951 9 N -0.621 5.621 10 C 0.119 3.881 11 C -0.114 4.114 12 C 0.007 3.993 13 C -0.239 4.239 14 C 0.047 3.953 15 N -0.333 5.333 16 N -0.472 5.472 17 H 0.452 0.548 18 C 0.074 3.926 19 C -0.112 4.112 20 C 0.142 3.858 21 H 0.260 0.740 22 H 0.036 0.964 23 H 0.043 0.957 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.175 0.825 28 H 0.214 0.786 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.118 -3.639 -6.631 20.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.234 4.234 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.242 1.242 6 H -0.182 1.182 7 C -0.376 4.376 8 H 0.067 0.933 9 N -0.346 5.346 10 C -0.005 4.005 11 C -0.153 4.153 12 C -0.012 4.012 13 C -0.250 4.250 14 C -0.139 4.139 15 N -0.157 5.157 16 N -0.182 5.182 17 H 0.298 0.702 18 C -0.074 4.074 19 C -0.151 4.151 20 C 0.017 3.983 21 H 0.069 0.931 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.066 0.934 26 H 0.104 0.896 27 H 0.192 0.808 28 H 0.231 0.769 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 19.212 -4.297 -7.653 21.122 hybrid contribution -0.354 1.194 0.616 1.389 sum 18.858 -3.104 -7.037 20.367 Atomic orbital electron populations 1.69981 1.07512 1.27109 1.56156 1.25929 0.95841 1.01085 1.00504 0.85869 0.78853 0.80042 0.77441 1.20273 1.24201 1.18152 1.18895 0.87062 0.93403 1.38221 0.93333 1.44507 1.07733 1.34795 1.47607 1.21410 0.96572 0.92004 0.90541 1.21919 0.97840 0.98594 0.96965 1.19231 0.95506 0.94316 0.92189 1.20193 0.93801 1.08121 1.02914 1.23881 0.99759 0.96905 0.93307 1.77246 0.90537 1.23472 1.24420 1.46284 1.09256 1.38636 1.23985 0.70206 1.22910 0.98101 0.96019 0.90365 1.21899 0.99171 0.97547 0.96500 1.21147 0.91903 0.90417 0.94818 0.93099 0.94600 0.93852 0.91019 0.93445 0.89598 0.80771 0.76927 0.93594 0.90269 0.94343 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.61 13.97 21.65 0.30 -61.31 16 2 C -0.04 -2.35 5.23 84.86 0.44 -1.90 16 3 Si 0.95 47.11 24.34 68.60 1.67 48.78 16 4 H -0.28 -12.98 6.62 99.48 0.66 -12.32 16 5 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 6 H -0.26 -12.04 6.63 99.48 0.66 -11.38 16 7 C -0.25 -14.21 10.04 84.04 0.84 -13.37 16 8 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 9 N -0.62 -29.30 2.77 -699.11 -1.94 -31.24 16 10 C 0.12 5.01 4.20 86.36 0.36 5.37 16 11 C -0.11 -3.80 5.24 30.67 0.16 -3.64 16 12 C 0.01 0.20 2.51 -11.51 -0.03 0.17 16 13 C -0.24 -5.75 4.80 -20.14 -0.10 -5.85 16 14 C 0.05 1.27 11.51 85.24 0.98 2.25 16 15 N -0.33 -8.74 12.70 -57.02 -0.72 -9.46 16 16 N -0.47 -8.52 7.36 -57.59 -0.42 -8.94 16 17 H 0.45 4.76 8.96 -213.34 -1.91 2.85 16 18 C 0.07 1.28 11.88 83.54 0.99 2.28 16 19 C -0.11 -3.40 5.24 30.67 0.16 -3.24 16 20 C 0.14 5.35 6.52 86.36 0.56 5.91 16 21 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 22 H 0.04 1.42 7.07 -2.39 -0.02 1.41 16 23 H 0.04 2.05 4.50 -2.39 -0.01 2.04 16 24 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.05 1.73 8.06 -2.39 -0.02 1.71 16 26 H 0.09 2.06 8.11 -2.39 -0.02 2.04 16 27 H 0.18 4.69 8.06 -2.91 -0.02 4.67 16 28 H 0.21 1.85 8.06 -2.91 -0.02 1.83 16 29 H 0.05 1.54 8.06 -2.38 -0.02 1.52 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.97 7.93 -2.39 -0.02 1.95 16 Total: -1.00 -71.85 258.26 2.38 -69.47 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -0.89 Total: 4.72 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 4.38 Total: -12.02 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -2.78 Total: -110.95 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 1.67 Total: 48.78 kcal Total: -71.85 2.38 -69.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687802315.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.377 kcal (2) G-P(sol) polarization free energy of solvation -71.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds