Wall clock time and date at job start Sun Mar 29 2020 22:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38597 * 120.44764 * 2 1 4 4 C 1.38594 * 118.40155 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.44876 * 179.97438 * 4 3 2 6 6 N 1.32334 * 119.10639 * 0.02562 * 4 3 2 7 7 C 1.31799 * 120.81488 * 359.97438 * 6 4 3 8 8 C 1.50702 * 119.12145 * 179.97438 * 7 6 4 9 9 N 1.46496 * 109.46695 * 90.00308 * 8 7 6 10 10 C 1.46499 * 120.00198 * 90.00397 * 9 8 7 11 11 C 1.36934 * 120.00040 * 269.99695 * 9 8 7 12 12 H 1.07999 * 120.00238 * 23.04453 * 11 9 8 13 13 C 1.38817 * 120.00277 * 203.05019 * 11 9 8 14 14 N 1.31619 * 119.99793 * 12.95284 * 13 11 9 15 15 Si 1.86799 * 120.00047 * 192.95450 * 13 11 9 16 16 H 1.48506 * 109.47004 * 89.99983 * 15 13 11 17 17 H 1.48495 * 109.47211 * 209.99951 * 15 13 11 18 18 H 1.48500 * 109.47347 * 329.99882 * 15 13 11 19 19 N 1.31798 * 121.75317 * 0.25985 * 7 6 4 20 20 H 1.08996 * 109.47261 * 89.99539 * 1 2 3 21 21 H 1.09001 * 109.47091 * 209.99863 * 1 2 3 22 22 H 1.09007 * 109.46918 * 329.99515 * 1 2 3 23 23 H 1.08007 * 120.80255 * 0.04616 * 3 2 1 24 24 H 1.09000 * 109.47191 * 270.02638 * 5 4 3 25 25 H 1.08990 * 109.46958 * 30.02596 * 5 4 3 26 26 H 1.09002 * 109.46765 * 150.02558 * 5 4 3 27 27 H 1.09003 * 109.47148 * 210.00235 * 8 7 6 28 28 H 1.08999 * 109.47180 * 330.00067 * 8 7 6 29 29 H 1.08996 * 109.47457 * 95.11785 * 10 9 8 30 30 H 1.09001 * 109.47205 * 215.12071 * 10 9 8 31 31 H 1.09003 * 109.47063 * 335.11367 * 10 9 8 32 32 H 0.97003 * 119.99993 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2093 1.1948 0.0000 4 6 3.5944 1.1453 -0.0005 5 6 4.4040 2.4165 -0.0012 6 7 4.1964 -0.0331 -0.0016 7 6 3.4955 -1.1493 -0.0015 8 6 4.2205 -2.4705 -0.0033 9 7 4.4568 -2.8995 1.3773 10 6 3.4628 -3.7244 2.0684 11 6 5.6070 -2.5296 2.0219 12 1 6.1517 -1.6560 1.6957 13 6 6.0730 -3.2777 3.0944 14 7 5.5682 -4.4693 3.3343 15 14 7.4164 -2.5931 4.1971 16 1 6.8003 -1.8337 5.3147 17 1 8.2249 -3.7116 4.7450 18 1 8.2920 -1.6897 3.4081 19 7 2.1776 -1.1408 -0.0056 20 1 -0.3633 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.6898 2.1418 0.0007 24 1 4.5984 2.7230 -1.0290 25 1 3.8490 3.2009 0.5131 26 1 5.3502 2.2447 0.5120 27 1 3.6144 -3.2168 -0.5170 28 1 5.1749 -2.3606 -0.5181 29 1 3.7332 -4.7760 1.9724 30 1 3.4342 -3.4515 3.1233 31 1 2.4814 -3.5595 1.6238 32 1 5.8935 -4.9919 4.0840 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700508712.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:57 Heat of formation + Delta-G solvation = 62.737629 kcal Electronic energy + Delta-G solvation = -14894.352410 eV Core-core repulsion = 12469.730898 eV Total energy + Delta-G solvation = -2424.621512 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57583 -35.65458 -34.36114 -33.05951 -30.92319 -29.02542 -27.55662 -26.73512 -25.70713 -22.55934 -21.31295 -20.47901 -17.28034 -16.54702 -15.38578 -15.16393 -14.79474 -14.49513 -13.48350 -13.33641 -13.20800 -13.07243 -12.83512 -12.40103 -12.15579 -11.96185 -11.59367 -11.15574 -10.83703 -10.65682 -10.39984 -10.21972 -9.92183 -9.87066 -9.78319 -8.89763 -8.67326 -8.50834 -6.77762 -5.68585 -3.16185 1.40423 1.55819 3.42033 3.47811 3.50445 4.16941 4.46030 4.49522 4.58223 4.73240 5.29120 5.38657 5.43675 5.47730 5.58175 5.62018 5.66548 5.76297 5.83221 6.03183 6.09981 6.15672 6.50723 6.64866 6.89708 6.98664 7.43087 7.61628 7.78344 7.91553 8.42231 8.78411 9.27282 9.87485 10.35977 11.36325 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030311 B = 0.008697 C = 0.007380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.521204 B = 3218.901509 C = 3793.328853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.167 3.833 3 C -0.253 4.253 4 C 0.169 3.831 5 C -0.103 4.103 6 N -0.510 5.510 7 C 0.328 3.672 8 C 0.210 3.790 9 N -0.583 5.583 10 C 0.160 3.840 11 C -0.255 4.255 12 H 0.074 0.926 13 C 0.003 3.997 14 N -0.907 5.907 15 Si 0.906 3.094 16 H -0.290 1.290 17 H -0.291 1.291 18 H -0.278 1.278 19 N -0.521 5.521 20 H 0.078 0.922 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.134 0.866 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.007 0.993 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.691 10.890 -6.969 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.020 3.980 3 C -0.276 4.276 4 C 0.022 3.978 5 C -0.160 4.160 6 N -0.226 5.226 7 C 0.058 3.942 8 C 0.079 3.921 9 N -0.304 5.304 10 C 0.016 3.984 11 C -0.384 4.384 12 H 0.092 0.908 13 C -0.196 4.196 14 N -0.552 5.552 15 Si 0.736 3.264 16 H -0.217 1.217 17 H -0.217 1.217 18 H -0.203 1.203 19 N -0.237 5.237 20 H 0.097 0.903 21 H 0.098 0.902 22 H 0.092 0.908 23 H 0.152 0.848 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.025 0.975 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.147 9.840 -6.807 13.937 hybrid contribution 0.168 1.292 0.865 1.564 sum -6.979 11.132 -5.943 14.421 Atomic orbital electron populations 1.20702 0.88666 1.03545 1.02971 1.21695 0.97213 0.88728 0.90328 1.22357 0.95806 0.99887 1.09514 1.21740 0.91409 0.94584 0.90042 1.20715 1.00286 0.92029 1.02975 1.68261 1.41713 0.98117 1.14489 1.25412 0.86254 0.96506 0.86003 1.19620 0.97135 0.86560 0.88795 1.43881 1.19383 1.58607 1.08510 1.20871 0.87244 0.94929 0.95383 1.19324 1.00550 1.06887 1.11637 0.90796 1.25024 0.98745 0.95299 1.00490 1.70092 1.44919 1.09744 1.30412 0.86221 0.81442 0.77917 0.80796 1.21674 1.21687 1.20297 1.68235 1.10456 1.29641 1.15363 0.90300 0.90150 0.90777 0.84781 0.90286 0.90786 0.89985 0.91617 0.90591 0.94583 0.94390 0.97469 0.93770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 10.22 36.00 0.37 -0.81 16 2 C 0.17 2.73 6.82 -82.25 -0.56 2.17 16 3 C -0.25 -3.78 9.54 -39.32 -0.38 -4.16 16 4 C 0.17 2.85 6.82 -82.24 -0.56 2.29 16 5 C -0.10 -1.27 10.22 36.01 0.37 -0.90 16 6 N -0.51 -10.60 10.27 -6.99 -0.07 -10.67 16 7 C 0.33 7.08 7.23 -157.19 -1.14 5.95 16 8 C 0.21 4.76 6.08 -5.20 -0.03 4.73 16 9 N -0.58 -15.58 2.90 -182.50 -0.53 -16.11 16 10 C 0.16 4.19 8.98 59.85 0.54 4.73 16 11 C -0.25 -7.33 9.65 -15.06 -0.15 -7.48 16 12 H 0.07 2.14 7.86 -52.49 -0.41 1.73 16 13 C 0.00 0.07 5.10 -17.43 -0.09 -0.02 16 14 N -0.91 -27.17 10.71 55.49 0.59 -26.57 16 15 Si 0.91 22.70 29.57 -169.99 -5.03 17.68 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 17 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 N -0.52 -10.40 10.27 -6.99 -0.07 -10.47 16 20 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 23 H 0.13 1.49 8.06 -52.48 -0.42 1.06 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16 28 H 0.08 1.70 8.04 -51.93 -0.42 1.28 16 29 H 0.04 0.99 7.34 -51.93 -0.38 0.61 16 30 H 0.04 1.06 7.34 -51.93 -0.38 0.68 16 31 H 0.01 0.16 8.03 -51.93 -0.42 -0.26 16 32 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 277.53 15.07 4.18 4.18 Total: -1.00 -32.95 277.53 -7.07 -40.02 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: -4.52 Total: -4.57 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -1.63 Total: 6.51 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: -0.08 Total: -63.82 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.95 -7.07 -40.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700508712.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.759 kcal (2) G-P(sol) polarization free energy of solvation -32.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds