Wall clock time and date at job start Sun Mar 29 2020 22:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38597 * 120.44764 * 2 1 4 4 C 1.38594 * 118.40155 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.44876 * 179.97438 * 4 3 2 6 6 N 1.32334 * 119.10639 * 0.02562 * 4 3 2 7 7 C 1.31799 * 120.81488 * 359.97438 * 6 4 3 8 8 C 1.50702 * 119.12145 * 179.97438 * 7 6 4 9 9 N 1.46496 * 109.46695 * 90.00308 * 8 7 6 10 10 C 1.46499 * 120.00198 * 90.00397 * 9 8 7 11 11 C 1.36934 * 120.00040 * 269.99695 * 9 8 7 12 12 H 1.07999 * 120.00238 * 23.04453 * 11 9 8 13 13 C 1.38817 * 120.00277 * 203.05019 * 11 9 8 14 14 N 1.31619 * 119.99793 * 12.95284 * 13 11 9 15 15 Si 1.86799 * 120.00047 * 192.95450 * 13 11 9 16 16 H 1.48506 * 109.47004 * 89.99983 * 15 13 11 17 17 H 1.48495 * 109.47211 * 209.99951 * 15 13 11 18 18 H 1.48500 * 109.47347 * 329.99882 * 15 13 11 19 19 N 1.31798 * 121.75317 * 0.25985 * 7 6 4 20 20 H 1.08996 * 109.47261 * 89.99539 * 1 2 3 21 21 H 1.09001 * 109.47091 * 209.99863 * 1 2 3 22 22 H 1.09007 * 109.46918 * 329.99515 * 1 2 3 23 23 H 1.08007 * 120.80255 * 0.04616 * 3 2 1 24 24 H 1.09000 * 109.47191 * 270.02638 * 5 4 3 25 25 H 1.08990 * 109.46958 * 30.02596 * 5 4 3 26 26 H 1.09002 * 109.46765 * 150.02558 * 5 4 3 27 27 H 1.09003 * 109.47148 * 210.00235 * 8 7 6 28 28 H 1.08999 * 109.47180 * 330.00067 * 8 7 6 29 29 H 1.08996 * 109.47457 * 95.11785 * 10 9 8 30 30 H 1.09001 * 109.47205 * 215.12071 * 10 9 8 31 31 H 1.09003 * 109.47063 * 335.11367 * 10 9 8 32 32 H 0.97003 * 119.99993 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2093 1.1948 0.0000 4 6 3.5944 1.1453 -0.0005 5 6 4.4040 2.4165 -0.0012 6 7 4.1964 -0.0331 -0.0016 7 6 3.4955 -1.1493 -0.0015 8 6 4.2205 -2.4705 -0.0033 9 7 4.4568 -2.8995 1.3773 10 6 3.4628 -3.7244 2.0684 11 6 5.6070 -2.5296 2.0219 12 1 6.1517 -1.6560 1.6957 13 6 6.0730 -3.2777 3.0944 14 7 5.5682 -4.4693 3.3343 15 14 7.4164 -2.5931 4.1971 16 1 6.8003 -1.8337 5.3147 17 1 8.2249 -3.7116 4.7450 18 1 8.2920 -1.6897 3.4081 19 7 2.1776 -1.1408 -0.0056 20 1 -0.3633 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.6898 2.1418 0.0007 24 1 4.5984 2.7230 -1.0290 25 1 3.8490 3.2009 0.5131 26 1 5.3502 2.2447 0.5120 27 1 3.6144 -3.2168 -0.5170 28 1 5.1749 -2.3606 -0.5181 29 1 3.7332 -4.7760 1.9724 30 1 3.4342 -3.4515 3.1233 31 1 2.4814 -3.5595 1.6238 32 1 5.8935 -4.9919 4.0840 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700508712.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:57 Heat of formation + Delta-G solvation = 41.199974 kcal Electronic energy + Delta-G solvation = -14895.286353 eV Core-core repulsion = 12469.730898 eV Total energy + Delta-G solvation = -2425.555455 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.93858 -37.60845 -35.62533 -34.60705 -32.89753 -30.19527 -28.99821 -28.16219 -27.84610 -24.34175 -22.53606 -22.26457 -18.88910 -18.42415 -17.08011 -16.66589 -16.18226 -16.07000 -15.41512 -15.05611 -14.56407 -14.26789 -14.03295 -13.65648 -13.37109 -13.21713 -13.11436 -12.94235 -12.82185 -12.60337 -12.34796 -12.04296 -11.92581 -11.66011 -11.14947 -10.71155 -10.16572 -10.07009 -8.90655 -7.87273 -5.38265 0.05052 0.27107 1.42674 1.43762 1.54111 2.45453 2.81213 3.09203 3.25491 3.31576 3.59445 3.77747 4.18553 4.22542 4.45499 4.54198 4.59321 4.73382 4.74267 4.80112 4.82604 4.85745 5.03342 5.06855 5.20357 5.24850 5.59526 5.64950 5.68204 6.26949 6.30416 7.08645 7.37149 7.76013 8.21716 9.16376 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030311 B = 0.008697 C = 0.007380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.521204 B = 3218.901509 C = 3793.328853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.151 3.849 3 C -0.236 4.236 4 C 0.149 3.851 5 C -0.098 4.098 6 N -0.546 5.546 7 C 0.306 3.694 8 C 0.212 3.788 9 N -0.601 5.601 10 C 0.182 3.818 11 C -0.262 4.262 12 H 0.066 0.934 13 C -0.051 4.051 14 N -0.936 5.936 15 Si 0.971 3.029 16 H -0.289 1.289 17 H -0.288 1.288 18 H -0.269 1.269 19 N -0.545 5.545 20 H 0.100 0.900 21 H 0.070 0.930 22 H 0.106 0.894 23 H 0.183 0.817 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.016 0.984 30 H 0.010 0.990 31 H 0.027 0.973 32 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.762 13.560 -7.310 17.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.005 3.995 3 C -0.258 4.258 4 C 0.004 3.996 5 C -0.155 4.155 6 N -0.263 5.263 7 C 0.036 3.964 8 C 0.083 3.917 9 N -0.323 5.323 10 C 0.037 3.963 11 C -0.391 4.391 12 H 0.084 0.916 13 C -0.246 4.246 14 N -0.582 5.582 15 Si 0.799 3.201 16 H -0.216 1.216 17 H -0.214 1.214 18 H -0.193 1.193 19 N -0.262 5.262 20 H 0.118 0.882 21 H 0.089 0.911 22 H 0.124 0.876 23 H 0.200 0.800 24 H 0.118 0.882 25 H 0.125 0.875 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.034 0.966 30 H 0.029 0.971 31 H 0.045 0.955 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.239 12.555 -7.187 16.648 hybrid contribution 0.396 0.584 0.857 1.110 sum -7.843 13.138 -6.329 16.559 Atomic orbital electron populations 1.20833 0.85188 1.04659 1.04648 1.22554 0.99450 0.88261 0.89230 1.22865 0.95091 1.01403 1.06405 1.22543 0.93139 0.94616 0.89312 1.20836 0.99390 0.90682 1.04585 1.68180 1.42865 0.99306 1.15903 1.24652 0.87108 0.96040 0.88638 1.19573 0.97311 0.87954 0.86832 1.44006 1.19105 1.59289 1.09919 1.20533 0.88161 0.93666 0.93908 1.19472 1.01164 1.06464 1.12045 0.91577 1.25809 1.01242 0.95645 1.01865 1.70236 1.46355 1.10784 1.30846 0.85212 0.78868 0.77301 0.78756 1.21555 1.21367 1.19325 1.68168 1.09758 1.31906 1.16392 0.88152 0.91091 0.87591 0.79975 0.88154 0.87471 0.91530 0.90731 0.91308 0.96607 0.97137 0.95452 0.94050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.88 10.22 71.23 0.73 -1.15 16 2 C 0.15 4.54 6.82 42.57 0.29 4.83 16 3 C -0.24 -6.18 9.54 22.44 0.21 -5.97 16 4 C 0.15 4.70 6.82 42.57 0.29 4.99 16 5 C -0.10 -2.11 10.22 71.24 0.73 -1.39 16 6 N -0.55 -22.57 10.27 -176.01 -1.81 -24.38 16 7 C 0.31 13.29 7.23 138.75 1.00 14.30 16 8 C 0.21 9.92 6.08 85.63 0.52 10.44 16 9 N -0.60 -32.98 2.90 -731.31 -2.12 -35.11 16 10 C 0.18 9.82 8.98 127.77 1.15 10.97 16 11 C -0.26 -15.41 9.65 84.04 0.81 -14.60 16 12 H 0.07 3.92 7.86 -2.91 -0.02 3.90 16 13 C -0.05 -2.97 5.10 84.86 0.43 -2.54 16 14 N -0.94 -57.42 10.71 21.65 0.23 -57.19 16 15 Si 0.97 47.26 29.57 68.60 2.03 49.29 16 16 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 17 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 19 N -0.55 -21.42 10.27 -176.02 -1.81 -23.23 16 20 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 21 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.11 1.41 8.10 -2.38 -0.02 1.39 16 23 H 0.18 2.92 8.06 -2.91 -0.02 2.90 16 24 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.11 1.59 8.10 -2.39 -0.02 1.57 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.07 3.23 8.07 -2.39 -0.02 3.21 16 28 H 0.07 3.21 8.04 -2.39 -0.02 3.19 16 29 H 0.02 0.90 7.34 -2.39 -0.02 0.88 16 30 H 0.01 0.58 7.34 -2.39 -0.02 0.56 16 31 H 0.03 1.32 8.03 -2.39 -0.02 1.30 16 32 H 0.25 14.79 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -73.25 277.53 3.78 -69.47 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: 1.09 Total: 1.27 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: 6.16 Total: 19.89 kcal Atomic # 7 Polarization: -134.40 SS G_CDS: -5.51 Total: -139.91 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -73.25 3.78 -69.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700508712.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.668 kcal (2) G-P(sol) polarization free energy of solvation -73.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds