Wall clock time and date at job start Sun Mar 29 2020 21:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17397 * 179.97438 * 2 1 4 4 C 1.43204 * 179.97438 * 258.10211 * 3 2 1 5 5 O 1.21612 * 119.99775 * 322.52724 * 4 3 2 6 6 N 1.34772 * 120.00038 * 142.53611 * 4 3 2 7 7 C 1.46927 * 120.63304 * 359.96926 * 6 4 3 8 8 C 1.53191 * 108.77794 * 233.63674 * 7 6 4 9 9 C 1.53034 * 109.31123 * 305.36335 * 8 7 6 10 10 C 1.53042 * 109.54073 * 61.36702 * 9 8 7 11 11 H 1.08996 * 109.52532 * 58.59745 * 10 9 8 12 12 C 1.50701 * 109.49952 * 178.68622 * 10 9 8 13 13 H 1.08002 * 119.99761 * 359.83101 * 12 10 9 14 14 C 1.37871 * 119.99694 * 180.11664 * 12 10 9 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 10 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 10 17 17 H 1.48504 * 109.47266 * 60.00049 * 16 14 12 18 18 H 1.48504 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47383 * 299.99456 * 16 14 12 20 20 C 1.46924 * 120.62966 * 180.02562 * 6 4 3 21 21 H 1.08998 * 109.47134 * 139.36805 * 1 2 3 22 22 H 1.09007 * 109.47157 * 259.36998 * 1 2 3 23 23 H 1.08998 * 109.47401 * 19.36476 * 1 2 3 24 24 H 1.09003 * 109.58082 * 353.42572 * 7 6 4 25 25 H 1.08998 * 109.58946 * 113.84600 * 7 6 4 26 26 H 1.08996 * 109.49525 * 65.31414 * 8 7 6 27 27 H 1.09004 * 109.49553 * 185.41229 * 8 7 6 28 28 H 1.09002 * 109.46285 * 301.34554 * 9 8 7 29 29 H 1.08996 * 109.46075 * 181.38915 * 9 8 7 30 30 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 31 31 H 1.08999 * 109.58824 * 6.57183 * 20 6 4 32 32 H 1.09006 * 109.70156 * 246.21992 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0013 0.0006 5 8 4.6862 -0.8342 0.6417 6 7 4.7517 0.9281 -0.7090 7 6 4.0309 1.9436 -1.4887 8 6 4.5397 1.9091 -2.9333 9 6 6.0610 2.0757 -2.9381 10 6 6.7052 0.9184 -2.1714 11 1 6.4224 -0.0272 -2.6339 12 6 8.2046 1.0660 -2.2042 13 1 8.6538 1.9002 -2.7227 14 6 9.0029 0.1329 -1.5775 15 7 8.4559 -0.8829 -0.9462 16 14 10.8618 0.3116 -1.6249 17 1 11.2516 1.5986 -0.9947 18 1 11.4862 -0.8121 -0.8815 19 1 11.3253 0.2907 -3.0355 20 6 6.2208 0.9413 -0.7186 21 1 -0.3633 -0.7799 -0.6692 22 1 -0.3634 -0.1896 1.0101 23 1 -0.3634 0.9695 -0.3407 24 1 2.9628 1.7268 -1.4722 25 1 4.2124 2.9296 -1.0609 26 1 4.2769 0.9544 -3.3888 27 1 4.0830 2.7209 -3.4993 28 1 6.3245 3.0192 -2.4602 29 1 6.4229 2.0762 -3.9662 30 1 9.0176 -1.5395 -0.5056 31 1 6.5976 0.0633 -0.1940 32 1 6.5834 1.8442 -0.2271 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701239916.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:17 Heat of formation + Delta-G solvation = 4.621465 kcal Electronic energy + Delta-G solvation = -14891.577471 eV Core-core repulsion = 12432.143101 eV Total energy + Delta-G solvation = -2459.434369 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.36886 -36.68910 -34.15687 -33.25674 -31.76778 -29.90135 -28.74875 -25.15469 -24.88919 -21.85411 -21.39879 -19.01654 -17.40825 -16.17908 -15.71223 -14.78209 -14.67847 -14.47518 -13.72458 -13.70628 -13.64597 -13.34539 -12.81665 -12.60186 -12.19092 -11.89271 -11.01779 -10.93441 -10.53369 -10.46385 -10.27725 -10.13605 -10.08425 -9.89932 -9.52407 -9.11982 -8.98211 -8.43632 -7.79462 -5.99268 -4.08694 1.98196 2.57426 3.32714 3.38869 3.40057 3.59553 4.01477 4.41409 4.47465 5.30211 5.34378 5.37274 5.39136 5.44770 5.51374 5.61840 5.75920 6.00260 6.18136 6.30676 6.59342 6.66143 6.84419 6.96229 7.12301 7.22766 7.47787 7.62866 7.85825 7.98117 8.18773 8.37453 8.77309 8.95558 9.57155 11.06201 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042438 B = 0.007511 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.628206 B = 3727.150009 C = 4259.653765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.125 4.125 3 C -0.198 4.198 4 C 0.614 3.386 5 O -0.522 6.522 6 N -0.593 5.593 7 C 0.109 3.891 8 C -0.133 4.133 9 C -0.111 4.111 10 C 0.039 3.961 11 H 0.030 0.970 12 C -0.522 4.522 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.881 5.881 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.112 3.888 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.265 0.735 31 H 0.124 0.876 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.031 5.325 -0.964 14.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.127 4.127 3 C -0.201 4.201 4 C 0.401 3.599 5 O -0.400 6.400 6 N -0.325 5.325 7 C -0.014 4.014 8 C -0.172 4.172 9 C -0.149 4.149 10 C 0.020 3.980 11 H 0.048 0.952 12 C -0.561 4.561 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.518 5.518 16 Si 0.722 3.278 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.203 1.203 20 C -0.007 4.007 21 H 0.105 0.895 22 H 0.103 0.897 23 H 0.104 0.896 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.142 0.858 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.606 4.723 -0.513 13.471 hybrid contribution 0.946 0.102 -0.051 0.953 sum -11.660 4.825 -0.564 12.631 Atomic orbital electron populations 1.18992 0.83901 1.03502 1.03559 1.22576 0.93773 0.98736 0.97655 1.21267 0.92968 1.02618 1.03284 1.14927 0.82138 0.82154 0.80720 1.90860 1.68327 1.37684 1.43157 1.48415 1.09445 1.28921 1.45681 1.21655 0.95706 0.91767 0.92282 1.21950 0.98675 1.01398 0.95140 1.21636 0.92178 1.00431 1.00631 1.18979 0.94852 0.93627 0.90524 0.95197 1.21028 0.90282 1.09984 1.34766 0.92307 1.25065 0.98828 0.95041 0.95104 1.69872 1.35375 1.12549 1.34030 0.86630 0.85446 0.77644 0.78116 1.20220 1.21241 1.20271 1.22390 0.72708 1.03868 1.01765 0.89498 0.89660 0.89647 0.91150 0.91777 0.92105 0.92078 0.93064 0.92868 0.92497 0.85764 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.36 10.32 34.37 0.35 0.00 16 2 C -0.12 -1.77 14.08 -37.12 -0.52 -2.30 16 3 C -0.20 -3.61 11.57 -38.84 -0.45 -4.06 16 4 C 0.61 13.71 7.55 -14.33 -0.11 13.60 16 5 O -0.52 -13.84 16.50 5.27 0.09 -13.76 16 6 N -0.59 -12.66 2.97 -175.67 -0.52 -13.18 16 7 C 0.11 1.82 6.33 -3.71 -0.02 1.80 16 8 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 9 C -0.11 -2.22 5.11 -26.69 -0.14 -2.36 16 10 C 0.04 0.98 2.25 -91.67 -0.21 0.78 16 11 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 12 C -0.52 -14.17 8.56 -34.44 -0.29 -14.47 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.74 5.31 -17.82 -0.09 1.65 16 15 N -0.88 -25.93 11.40 55.43 0.63 -25.29 16 16 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.11 2.78 5.40 -3.73 -0.02 2.76 16 21 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 1.03 6.32 -51.93 -0.33 0.70 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.12 3.58 5.13 -51.93 -0.27 3.31 16 32 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 273.19 15.07 4.12 4.12 Total: -1.00 -32.05 273.19 -6.73 -38.78 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -4.36 Total: -1.96 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.66 Total: -4.98 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.11 Total: -38.47 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.09 Total: -13.76 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.05 -6.73 -38.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701239916.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.403 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds