Wall clock time and date at job start Sun Mar 29 2020 21:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17397 * 179.97438 * 2 1 4 4 C 1.43204 * 179.97438 * 258.10211 * 3 2 1 5 5 O 1.21612 * 119.99775 * 322.52724 * 4 3 2 6 6 N 1.34772 * 120.00038 * 142.53611 * 4 3 2 7 7 C 1.46927 * 120.63304 * 359.96926 * 6 4 3 8 8 C 1.53191 * 108.77794 * 233.63674 * 7 6 4 9 9 C 1.53034 * 109.31123 * 305.36335 * 8 7 6 10 10 C 1.53042 * 109.54073 * 61.36702 * 9 8 7 11 11 H 1.08996 * 109.52532 * 58.59745 * 10 9 8 12 12 C 1.50701 * 109.49952 * 178.68622 * 10 9 8 13 13 H 1.08002 * 119.99761 * 359.83101 * 12 10 9 14 14 C 1.37871 * 119.99694 * 180.11664 * 12 10 9 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 10 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 10 17 17 H 1.48504 * 109.47266 * 60.00049 * 16 14 12 18 18 H 1.48504 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47383 * 299.99456 * 16 14 12 20 20 C 1.46924 * 120.62966 * 180.02562 * 6 4 3 21 21 H 1.08998 * 109.47134 * 139.36805 * 1 2 3 22 22 H 1.09007 * 109.47157 * 259.36998 * 1 2 3 23 23 H 1.08998 * 109.47401 * 19.36476 * 1 2 3 24 24 H 1.09003 * 109.58082 * 353.42572 * 7 6 4 25 25 H 1.08998 * 109.58946 * 113.84600 * 7 6 4 26 26 H 1.08996 * 109.49525 * 65.31414 * 8 7 6 27 27 H 1.09004 * 109.49553 * 185.41229 * 8 7 6 28 28 H 1.09002 * 109.46285 * 301.34554 * 9 8 7 29 29 H 1.08996 * 109.46075 * 181.38915 * 9 8 7 30 30 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 31 31 H 1.08999 * 109.58824 * 6.57183 * 20 6 4 32 32 H 1.09006 * 109.70156 * 246.21992 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0013 0.0006 5 8 4.6862 -0.8342 0.6417 6 7 4.7517 0.9281 -0.7090 7 6 4.0309 1.9436 -1.4887 8 6 4.5397 1.9091 -2.9333 9 6 6.0610 2.0757 -2.9381 10 6 6.7052 0.9184 -2.1714 11 1 6.4224 -0.0272 -2.6339 12 6 8.2046 1.0660 -2.2042 13 1 8.6538 1.9002 -2.7227 14 6 9.0029 0.1329 -1.5775 15 7 8.4559 -0.8829 -0.9462 16 14 10.8618 0.3116 -1.6249 17 1 11.2516 1.5986 -0.9947 18 1 11.4862 -0.8121 -0.8815 19 1 11.3253 0.2907 -3.0355 20 6 6.2208 0.9413 -0.7186 21 1 -0.3633 -0.7799 -0.6692 22 1 -0.3634 -0.1896 1.0101 23 1 -0.3634 0.9695 -0.3407 24 1 2.9628 1.7268 -1.4722 25 1 4.2124 2.9296 -1.0609 26 1 4.2769 0.9544 -3.3888 27 1 4.0830 2.7209 -3.4993 28 1 6.3245 3.0192 -2.4602 29 1 6.4229 2.0762 -3.9662 30 1 9.0176 -1.5395 -0.5056 31 1 6.5976 0.0633 -0.1940 32 1 6.5834 1.8442 -0.2271 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701239916.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:17 Heat of formation + Delta-G solvation = -16.391830 kcal Electronic energy + Delta-G solvation = -14892.488675 eV Core-core repulsion = 12432.143101 eV Total energy + Delta-G solvation = -2460.345574 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.05900 -38.42959 -35.57507 -34.97352 -33.48898 -31.66237 -29.79959 -27.12534 -26.47560 -23.54366 -22.97854 -20.73458 -19.07092 -18.17464 -17.42543 -16.55169 -16.24667 -15.96779 -15.25829 -14.98076 -14.70899 -14.44388 -14.34146 -14.31307 -13.88263 -13.55523 -12.85746 -12.77002 -12.33251 -12.27974 -11.91422 -11.68920 -11.56731 -11.27158 -11.09708 -11.01455 -10.86711 -10.54134 -9.54688 -8.12048 -6.30239 0.58101 1.32474 1.41481 1.43701 1.51851 2.09544 2.42082 2.53256 3.14393 3.21847 3.99611 4.11193 4.21329 4.44371 4.53458 4.70199 4.75066 4.80689 4.83181 4.84648 5.04306 5.04971 5.20851 5.22835 5.32174 5.48420 5.58280 5.84582 5.95184 6.28131 6.30153 6.47676 6.82613 7.10020 7.40648 8.91779 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042438 B = 0.007511 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.628206 B = 3727.150009 C = 4259.653765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.047 4.047 3 C -0.286 4.286 4 C 0.608 3.392 5 O -0.588 6.588 6 N -0.596 5.596 7 C 0.105 3.895 8 C -0.125 4.125 9 C -0.105 4.105 10 C 0.037 3.963 11 H -0.014 1.014 12 C -0.536 4.536 13 H 0.066 0.934 14 C 0.008 3.992 15 N -0.919 5.919 16 Si 0.962 3.038 17 H -0.265 1.265 18 H -0.290 1.290 19 H -0.267 1.267 20 C 0.124 3.876 21 H 0.111 0.889 22 H 0.109 0.891 23 H 0.119 0.881 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.048 0.952 27 H 0.109 0.891 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.260 0.740 31 H 0.077 0.923 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.602 7.415 -1.953 17.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.049 4.049 3 C -0.289 4.289 4 C 0.398 3.602 5 O -0.471 6.471 6 N -0.327 5.327 7 C -0.016 4.016 8 C -0.163 4.163 9 C -0.143 4.143 10 C 0.018 3.982 11 H 0.004 0.996 12 C -0.574 4.574 13 H 0.085 0.915 14 C -0.192 4.192 15 N -0.558 5.558 16 Si 0.787 3.213 17 H -0.190 1.190 18 H -0.216 1.216 19 H -0.192 1.192 20 C 0.002 3.998 21 H 0.129 0.871 22 H 0.127 0.873 23 H 0.137 0.863 24 H 0.116 0.884 25 H 0.104 0.896 26 H 0.067 0.933 27 H 0.128 0.872 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.210 6.866 -1.542 16.758 hybrid contribution 1.569 -0.539 0.244 1.676 sum -13.641 6.327 -1.298 15.093 Atomic orbital electron populations 1.19545 0.79061 1.06194 1.05762 1.23766 0.94603 0.93865 0.92682 1.20538 0.92285 1.07738 1.08355 1.15441 0.84165 0.81086 0.79529 1.90797 1.70273 1.40129 1.45902 1.48436 1.08274 1.29895 1.46046 1.22004 0.96725 0.91264 0.91635 1.21915 0.96101 1.02653 0.95607 1.21530 0.94558 0.98330 0.99888 1.18926 0.94559 0.93753 0.90995 0.99632 1.21486 0.91791 1.09931 1.34229 0.91536 1.25957 1.03775 0.94689 0.94733 1.70091 1.36894 1.13567 1.35213 0.85553 0.79561 0.77736 0.78482 1.19014 1.21576 1.19158 1.21852 0.75392 1.01489 1.01054 0.87053 0.87271 0.86320 0.88432 0.89612 0.93329 0.87235 0.91975 0.92467 0.93055 0.90434 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.53 10.32 70.18 0.72 0.19 16 2 C -0.05 -1.17 14.08 31.13 0.44 -0.73 16 3 C -0.29 -10.32 11.57 30.02 0.35 -9.97 16 4 C 0.61 28.60 7.55 85.49 0.65 29.25 16 5 O -0.59 -33.83 16.50 -4.07 -0.07 -33.90 16 6 N -0.60 -26.28 2.97 -827.94 -2.46 -28.74 16 7 C 0.11 3.31 6.33 86.36 0.55 3.85 16 8 C -0.12 -3.85 6.08 30.67 0.19 -3.66 16 9 C -0.11 -4.12 5.11 30.62 0.16 -3.97 16 10 C 0.04 1.91 2.25 -11.47 -0.03 1.89 16 11 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 12 C -0.54 -29.88 8.56 25.60 0.22 -29.66 16 13 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 14 C 0.01 0.44 5.31 84.65 0.45 0.89 16 15 N -0.92 -57.34 11.40 21.45 0.24 -57.10 16 16 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 20 C 0.12 6.47 5.40 86.35 0.47 6.94 16 21 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 23 H 0.12 0.65 8.14 -2.39 -0.02 0.64 16 24 H 0.10 2.56 6.32 -2.39 -0.02 2.55 16 25 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 31 H 0.08 4.84 5.13 -2.39 -0.01 4.83 16 32 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 Total: -1.00 -77.85 273.19 5.00 -72.85 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 1.11 Total: 5.14 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 4.15 Total: -4.99 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -2.22 Total: -85.84 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.07 Total: -33.90 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -77.85 5.00 -72.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701239916.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.454 kcal (2) G-P(sol) polarization free energy of solvation -77.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds