Wall clock time and date at job start Sun Mar 29 2020 21:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47198 * 1 3 3 C 1.17397 * 179.97438 * 2 1 4 4 C 1.43200 * 179.97438 * 194.43270 * 3 2 1 5 5 O 1.21612 * 120.00236 * 191.67189 * 4 3 2 6 6 N 1.34784 * 120.00197 * 11.66958 * 4 3 2 7 7 C 1.46919 * 120.63188 * 180.02562 * 6 4 3 8 8 C 1.53195 * 108.89273 * 233.51696 * 7 6 4 9 9 C 1.53070 * 109.29524 * 305.57804 * 8 7 6 10 10 C 1.50699 * 109.44585 * 181.23845 * 9 8 7 11 11 H 1.08005 * 120.00131 * 239.80327 * 10 9 8 12 12 C 1.37878 * 120.00094 * 59.78830 * 10 9 8 13 13 N 1.31516 * 119.99537 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00155 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47167 * 90.00227 * 14 12 10 16 16 H 1.48498 * 109.47154 * 210.00526 * 14 12 10 17 17 H 1.48500 * 109.46853 * 330.00443 * 14 12 10 18 18 C 1.53039 * 109.65812 * 61.15209 * 9 8 7 19 19 C 1.46928 * 120.62829 * 359.97438 * 6 4 3 20 20 H 1.09001 * 109.47198 * 333.89310 * 1 2 3 21 21 H 1.09000 * 109.47543 * 93.89718 * 1 2 3 22 22 H 1.09005 * 109.46935 * 213.89757 * 1 2 3 23 23 H 1.09002 * 109.58751 * 353.37646 * 7 6 4 24 24 H 1.08996 * 109.58750 * 113.65831 * 7 6 4 25 25 H 1.08997 * 109.50046 * 65.38734 * 8 7 6 26 26 H 1.09003 * 109.49733 * 185.48713 * 8 7 6 27 27 H 1.09007 * 109.35101 * 301.12962 * 9 8 7 28 28 H 0.97008 * 119.99764 * 179.97438 * 13 12 10 29 29 H 1.09002 * 109.49876 * 178.74890 * 18 9 8 30 30 H 1.09005 * 109.52615 * 58.67140 * 18 9 8 31 31 H 1.08998 * 109.58787 * 246.20220 * 19 6 4 32 32 H 1.09007 * 109.58600 * 6.48533 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.0780 0.0018 0.0002 5 8 4.6851 1.0337 0.2133 6 7 4.7529 -1.1407 -0.2359 7 6 6.2221 -1.1554 -0.2384 8 6 6.7097 -1.7683 -1.5550 9 6 6.0642 -3.1434 -1.7425 10 6 6.5651 -3.7626 -3.0219 11 1 5.8682 -4.0226 -3.8050 12 6 7.9130 -3.9969 -3.1929 13 7 8.7615 -3.6804 -2.2391 14 14 8.5340 -4.7636 -4.7790 15 1 8.8495 -3.6914 -5.7567 16 1 9.7590 -5.5551 -4.4997 17 1 7.4869 -5.6539 -5.3414 18 6 4.5427 -2.9930 -1.8104 19 6 4.0335 -2.3955 -0.4944 20 1 -0.3634 0.9228 0.4522 21 1 -0.3634 -0.0698 -1.0253 22 1 -0.3633 -0.8530 0.5732 23 1 6.5978 -0.1361 -0.1485 24 1 6.5830 -1.7530 0.5986 25 1 6.4277 -1.1200 -2.3846 26 1 7.7943 -1.8737 -1.5275 27 1 6.3285 -3.7843 -0.9013 28 1 9.7098 -3.8456 -2.3592 29 1 4.0870 -3.9709 -1.9661 30 1 4.2784 -2.3328 -2.6365 31 1 4.2163 -3.0960 0.3204 32 1 2.9648 -2.1948 -0.5709 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701240016.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:13 Heat of formation + Delta-G solvation = 3.823315 kcal Electronic energy + Delta-G solvation = -14741.002715 eV Core-core repulsion = 12281.533735 eV Total energy + Delta-G solvation = -2459.468980 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.62820 -36.82217 -34.27380 -33.48416 -31.12897 -30.41134 -28.75643 -26.26924 -23.59610 -22.54949 -21.23465 -19.08316 -17.51201 -16.49510 -15.84309 -14.94161 -14.88524 -14.56406 -13.83483 -13.74163 -13.54887 -13.17568 -12.85223 -12.68167 -12.31411 -11.82053 -11.22446 -10.94807 -10.67242 -10.46374 -10.34713 -10.24130 -10.06292 -9.85246 -9.58794 -9.21130 -8.95096 -8.39035 -8.06811 -6.03257 -4.09971 1.77654 2.42607 3.28501 3.35182 3.35884 3.38127 3.78096 4.28031 4.40558 5.26472 5.30364 5.31975 5.32570 5.44048 5.55980 5.76293 5.92142 6.03330 6.23119 6.38432 6.41731 6.60231 6.78649 6.93024 7.16237 7.29864 7.35173 7.67678 7.79192 7.90749 8.04137 8.37980 8.43758 8.93207 9.55263 11.02315 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045932 B = 0.006566 C = 0.006024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.449272 B = 4263.078386 C = 4647.290711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.109 4.109 3 C -0.207 4.207 4 C 0.622 3.378 5 O -0.542 6.542 6 N -0.587 5.587 7 C 0.109 3.891 8 C -0.123 4.123 9 C 0.047 3.953 10 C -0.513 4.513 11 H 0.055 0.945 12 C 0.062 3.938 13 N -0.890 5.890 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.275 1.275 18 C -0.123 4.123 19 C 0.106 3.894 20 H 0.086 0.914 21 H 0.089 0.911 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.039 0.961 26 H 0.107 0.893 27 H 0.028 0.972 28 H 0.261 0.739 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.330 2.715 4.015 13.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.112 4.112 3 C -0.210 4.210 4 C 0.410 3.590 5 O -0.421 6.421 6 N -0.318 5.318 7 C -0.011 4.011 8 C -0.162 4.162 9 C 0.029 3.971 10 C -0.552 4.552 11 H 0.073 0.927 12 C -0.140 4.140 13 N -0.529 5.529 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.161 4.161 19 C -0.016 4.016 20 H 0.104 0.896 21 H 0.108 0.892 22 H 0.107 0.893 23 H 0.097 0.903 24 H 0.082 0.918 25 H 0.058 0.942 26 H 0.125 0.875 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.768 3.214 4.164 12.890 hybrid contribution 0.373 -0.477 -0.903 1.088 sum -11.395 2.737 3.261 12.164 Atomic orbital electron populations 1.19044 0.83725 1.03672 1.03812 1.22614 0.93806 0.99341 0.95415 1.20915 0.92741 1.02427 1.04917 1.14857 0.82485 0.83865 0.77815 1.90797 1.68760 1.31767 1.50815 1.48140 1.08297 1.07939 1.67405 1.21988 0.76417 1.01963 1.00778 1.22051 1.04457 0.97371 0.92307 1.18664 0.88046 0.92901 0.97514 1.21174 0.92302 1.40106 1.01581 0.92692 1.24966 0.96990 0.95531 0.96469 1.69842 1.02691 1.47902 1.32497 0.86603 0.78339 0.79329 0.83780 1.20718 1.21231 1.19979 1.22024 1.00445 0.99387 0.94283 1.21907 0.95361 0.84877 0.99464 0.89596 0.89237 0.89343 0.90269 0.91801 0.94193 0.87535 0.95348 0.92912 0.91892 0.92815 0.91544 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.35 10.32 34.37 0.35 0.00 16 2 C -0.11 -1.44 14.08 -37.12 -0.52 -1.96 16 3 C -0.21 -3.46 11.57 -38.84 -0.45 -3.91 16 4 C 0.62 12.25 7.55 -14.33 -0.11 12.14 16 5 O -0.54 -12.21 16.50 5.27 0.09 -12.12 16 6 N -0.59 -11.27 2.97 -175.61 -0.52 -11.79 16 7 C 0.11 2.23 6.43 -3.71 -0.02 2.20 16 8 C -0.12 -2.87 5.16 -26.59 -0.14 -3.01 16 9 C 0.05 1.12 2.06 -91.72 -0.19 0.94 16 10 C -0.51 -13.65 8.56 -34.44 -0.29 -13.94 16 11 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 12 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 13 N -0.89 -24.69 11.30 55.43 0.63 -24.06 16 14 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 18 C -0.12 -2.43 5.31 -26.59 -0.14 -2.57 16 19 C 0.11 1.82 6.33 -3.68 -0.02 1.80 16 20 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 21 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.08 1.63 7.00 -51.93 -0.36 1.26 16 24 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 25 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.11 2.74 6.03 -51.93 -0.31 2.42 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.05 6.32 -51.92 -0.33 0.72 16 LS Contribution 272.97 15.07 4.11 4.11 Total: -1.00 -30.39 272.97 -6.70 -37.09 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -4.35 Total: -2.36 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -1.63 Total: -6.74 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.10 Total: -35.85 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.39 -6.70 -37.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701240016.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.908 kcal (2) G-P(sol) polarization free energy of solvation -30.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds