Wall clock time and date at job start Sun Mar 29 2020 21:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34417 * 125.73979 * 2 1 4 4 C 1.38321 * 107.35130 * 180.02562 * 3 2 1 5 5 C 1.46938 * 126.44159 * 179.97438 * 4 3 2 6 6 C 1.35187 * 119.99541 * 134.60235 * 5 4 3 7 7 C 1.41647 * 120.00109 * 347.23421 * 6 5 4 8 8 O 1.21789 * 119.99784 * 353.14599 * 7 6 5 9 9 N 1.34770 * 119.99857 * 173.15014 * 7 6 5 10 10 C 1.36817 * 120.00156 * 179.97438 * 9 7 6 11 11 H 1.08000 * 119.99441 * 359.97438 * 10 9 7 12 12 C 1.39045 * 119.99928 * 179.97438 * 10 9 7 13 13 N 1.31378 * 119.99486 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00337 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47239 * 89.99763 * 14 12 10 16 16 H 1.48502 * 109.47345 * 209.99794 * 14 12 10 17 17 H 1.48503 * 109.47042 * 329.99822 * 14 12 10 18 18 C 1.41444 * 107.11425 * 0.23235 * 4 3 2 19 19 N 1.30445 * 108.03924 * 359.60870 * 18 4 3 20 20 H 1.08997 * 109.47483 * 90.00200 * 1 2 3 21 21 H 1.09010 * 109.46831 * 209.99653 * 1 2 3 22 22 H 1.09003 * 109.47063 * 329.99302 * 1 2 3 23 23 H 1.07994 * 126.32240 * 0.04125 * 3 2 1 24 24 H 1.07998 * 120.00621 * 314.60848 * 5 4 3 25 25 H 1.07997 * 119.99748 * 167.22805 * 6 5 4 26 26 H 0.97000 * 120.00303 * 359.97438 * 9 7 6 27 27 H 0.97000 * 119.99605 * 179.97438 * 13 12 10 28 28 H 1.08007 * 125.98048 * 179.75447 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2502 1.0910 0.0000 4 6 3.5628 0.6547 -0.0006 5 6 4.7639 1.5010 -0.0013 6 6 5.7903 1.2184 0.8318 7 6 5.6122 0.2881 1.8850 8 8 4.5051 -0.1628 2.1183 9 7 6.6676 -0.0980 2.6288 10 6 6.4955 -0.9962 3.6464 11 1 5.5137 -1.3954 3.8538 12 6 7.5846 -1.3948 4.4134 13 7 7.4191 -2.2570 5.3908 14 14 9.2825 -0.7036 4.0551 15 1 9.4914 0.5332 4.8500 16 1 10.3133 -1.7078 4.4218 17 1 9.3928 -0.3868 2.6084 18 6 3.5313 -0.7594 -0.0064 19 7 2.2823 -1.1357 -0.0007 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3633 0.8899 0.5140 23 1 1.9176 2.1185 0.0006 24 1 4.8268 2.3489 -0.6673 25 1 6.7462 1.7019 0.6943 26 1 7.5494 0.2610 2.4427 27 1 8.1789 -2.5354 5.9257 28 1 4.3910 -1.4132 -0.0121 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701314711.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:42 Heat of formation + Delta-G solvation = 75.788631 kcal Electronic energy + Delta-G solvation = -14385.946529 eV Core-core repulsion = 11826.057856 eV Total energy + Delta-G solvation = -2559.888673 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.51193 -38.37504 -34.37798 -33.14182 -32.05201 -31.60924 -29.05482 -26.50895 -25.02239 -22.24965 -20.46927 -20.11255 -18.94461 -17.71154 -16.48850 -15.73541 -15.02142 -14.78245 -14.11294 -13.59928 -13.49373 -13.13265 -12.83283 -12.69258 -12.29266 -12.21576 -11.83762 -11.60265 -11.22080 -10.57643 -10.14347 -9.97075 -9.59636 -9.21629 -8.85667 -8.36635 -8.09998 -7.20607 -6.34210 -3.75504 1.69955 2.51034 2.98697 3.06209 3.09448 3.15917 3.66245 4.09770 4.43844 4.84010 4.99415 5.18900 5.25631 5.36527 5.45456 5.51947 5.72459 5.80508 6.19393 6.27430 6.40295 6.88706 7.01594 7.25398 7.48372 7.62164 8.21903 8.29786 8.64631 8.99942 9.46416 9.98855 10.78456 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.049925 B = 0.006967 C = 0.006354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.704338 B = 4017.890569 C = 4405.610096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.383 5.383 3 C 0.050 3.950 4 C -0.186 4.186 5 C -0.025 4.025 6 C -0.196 4.196 7 C 0.465 3.535 8 O -0.571 6.571 9 N -0.579 5.579 10 C -0.293 4.293 11 H 0.121 0.879 12 C 0.038 3.962 13 N -0.875 5.875 14 Si 0.881 3.119 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.267 1.267 18 C 0.127 3.873 19 N -0.316 5.316 20 H 0.066 0.934 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.167 0.833 24 H 0.118 0.882 25 H 0.113 0.887 26 H 0.370 0.630 27 H 0.274 0.726 28 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.717 8.620 -11.597 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.164 5.164 3 C -0.096 4.096 4 C -0.198 4.198 5 C -0.048 4.048 6 C -0.218 4.218 7 C 0.256 3.744 8 O -0.456 6.456 9 N -0.216 5.216 10 C -0.422 4.422 11 H 0.138 0.862 12 C -0.166 4.166 13 N -0.514 5.514 14 Si 0.708 3.292 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.192 1.192 18 C -0.060 4.060 19 N -0.136 5.136 20 H 0.085 0.915 21 H 0.103 0.897 22 H 0.099 0.901 23 H 0.184 0.816 24 H 0.136 0.864 25 H 0.131 0.869 26 H 0.203 0.797 27 H 0.085 0.915 28 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.318 7.166 -11.207 15.182 hybrid contribution 2.088 1.234 0.129 2.429 sum -5.230 8.400 -11.078 14.854 Atomic orbital electron populations 1.21688 0.75255 1.04040 1.02419 1.47971 1.06076 1.04013 1.58388 1.22715 0.90773 0.92716 1.03393 1.19168 0.91976 0.93325 1.15301 1.21293 0.91381 0.95846 0.96274 1.22106 0.99133 1.02841 0.97704 1.16684 0.85391 0.86554 0.85745 1.90749 1.23678 1.59180 1.71992 1.42373 1.08518 1.40062 1.30675 1.19517 0.98629 1.17718 1.06368 0.86173 1.25135 0.98491 0.96874 0.96081 1.69621 1.31889 1.30960 1.18914 0.86629 0.84152 0.79651 0.78807 1.19589 1.20153 1.19246 1.23715 0.94162 0.94051 0.94089 1.77006 1.02320 1.07621 1.26654 0.91510 0.89709 0.90133 0.81552 0.86424 0.86930 0.79717 0.91516 0.80899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.16 11.44 59.85 0.68 1.85 15 2 N -0.38 -6.28 3.98 -67.48 -0.27 -6.55 15 3 C 0.05 0.78 11.52 -16.39 -0.19 0.60 15 4 C -0.19 -3.37 4.46 -105.12 -0.47 -3.84 15 5 C -0.03 -0.40 10.13 -37.15 -0.38 -0.78 15 6 C -0.20 -3.51 9.80 -39.37 -0.39 -3.90 15 7 C 0.47 10.91 7.12 -14.96 -0.11 10.81 15 8 O -0.57 -15.40 11.96 5.11 0.06 -15.34 15 9 N -0.58 -14.15 5.07 -13.60 -0.07 -14.22 15 10 C -0.29 -8.39 10.16 -15.03 -0.15 -8.54 15 11 H 0.12 3.95 7.38 -52.49 -0.39 3.56 15 12 C 0.04 1.05 5.50 -17.45 -0.10 0.95 15 13 N -0.87 -25.68 13.95 55.50 0.77 -24.91 15 14 Si 0.88 19.53 27.74 -169.99 -4.71 14.82 15 15 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 17 H -0.27 -5.42 6.52 56.52 0.37 -5.05 15 18 C 0.13 2.58 9.14 -16.92 -0.15 2.43 15 19 N -0.32 -6.34 12.49 30.90 0.39 -5.96 15 20 H 0.07 0.57 8.14 -51.93 -0.42 0.15 15 21 H 0.08 0.92 8.14 -51.92 -0.42 0.49 15 22 H 0.08 0.66 8.14 -51.93 -0.42 0.24 15 23 H 0.17 1.89 8.06 -52.49 -0.42 1.47 15 24 H 0.12 1.40 8.06 -52.49 -0.42 0.98 15 25 H 0.11 1.64 8.06 -52.49 -0.42 1.22 15 26 H 0.37 7.96 5.72 -40.82 -0.23 7.73 15 27 H 0.27 7.41 8.31 -40.82 -0.34 7.08 15 28 H 0.17 3.53 7.94 -52.48 -0.42 3.12 15 LS Contribution 253.15 15.07 3.81 3.81 Total: -1.00 -34.99 253.15 -4.00 -38.99 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -2.74 Total: 9.78 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.24 Total: -0.43 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.82 Total: -51.63 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.06 Total: -15.34 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.71 Total: 14.82 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -34.99 -4.00 -38.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701314711.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.777 kcal (2) G-P(sol) polarization free energy of solvation -34.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds