Wall clock time and date at job start Sun Mar 29 2020 21:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34417 * 125.73979 * 2 1 4 4 C 1.38321 * 107.35130 * 180.02562 * 3 2 1 5 5 C 1.46938 * 126.44159 * 179.97438 * 4 3 2 6 6 C 1.35187 * 119.99541 * 134.60235 * 5 4 3 7 7 C 1.41647 * 120.00109 * 347.23421 * 6 5 4 8 8 O 1.21789 * 119.99784 * 353.14599 * 7 6 5 9 9 N 1.34770 * 119.99857 * 173.15014 * 7 6 5 10 10 C 1.36817 * 120.00156 * 179.97438 * 9 7 6 11 11 H 1.08000 * 119.99441 * 359.97438 * 10 9 7 12 12 C 1.39045 * 119.99928 * 179.97438 * 10 9 7 13 13 N 1.31378 * 119.99486 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00337 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47239 * 89.99763 * 14 12 10 16 16 H 1.48502 * 109.47345 * 209.99794 * 14 12 10 17 17 H 1.48503 * 109.47042 * 329.99822 * 14 12 10 18 18 C 1.41444 * 107.11425 * 0.23235 * 4 3 2 19 19 N 1.30445 * 108.03924 * 359.60870 * 18 4 3 20 20 H 1.08997 * 109.47483 * 90.00200 * 1 2 3 21 21 H 1.09010 * 109.46831 * 209.99653 * 1 2 3 22 22 H 1.09003 * 109.47063 * 329.99302 * 1 2 3 23 23 H 1.07994 * 126.32240 * 0.04125 * 3 2 1 24 24 H 1.07998 * 120.00621 * 314.60848 * 5 4 3 25 25 H 1.07997 * 119.99748 * 167.22805 * 6 5 4 26 26 H 0.97000 * 120.00303 * 359.97438 * 9 7 6 27 27 H 0.97000 * 119.99605 * 179.97438 * 13 12 10 28 28 H 1.08007 * 125.98048 * 179.75447 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2502 1.0910 0.0000 4 6 3.5628 0.6547 -0.0006 5 6 4.7639 1.5010 -0.0013 6 6 5.7903 1.2184 0.8318 7 6 5.6122 0.2881 1.8850 8 8 4.5051 -0.1628 2.1183 9 7 6.6676 -0.0980 2.6288 10 6 6.4955 -0.9962 3.6464 11 1 5.5137 -1.3954 3.8538 12 6 7.5846 -1.3948 4.4134 13 7 7.4191 -2.2570 5.3908 14 14 9.2825 -0.7036 4.0551 15 1 9.4914 0.5332 4.8500 16 1 10.3133 -1.7078 4.4218 17 1 9.3928 -0.3868 2.6084 18 6 3.5313 -0.7594 -0.0064 19 7 2.2823 -1.1357 -0.0007 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3633 0.8899 0.5140 23 1 1.9176 2.1185 0.0006 24 1 4.8268 2.3489 -0.6673 25 1 6.7462 1.7019 0.6943 26 1 7.5494 0.2610 2.4427 27 1 8.1789 -2.5354 5.9257 28 1 4.3910 -1.4132 -0.0121 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701314711.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:41 Heat of formation + Delta-G solvation = 48.393858 kcal Electronic energy + Delta-G solvation = -14387.134455 eV Core-core repulsion = 11826.057856 eV Total energy + Delta-G solvation = -2561.076599 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.87495 -40.19611 -36.19806 -34.65377 -33.75432 -33.30107 -30.42231 -27.88610 -26.71956 -23.84621 -21.82014 -21.63451 -20.85480 -19.35938 -18.07018 -17.25112 -16.55291 -16.20574 -15.62413 -15.32169 -15.00272 -14.81774 -14.58791 -13.90306 -13.77934 -13.41140 -13.34008 -12.98757 -12.84388 -12.39617 -11.97999 -11.55040 -11.46353 -10.65582 -10.32075 -10.21219 -9.99871 -8.62247 -8.41418 -5.95242 0.35185 1.15840 1.31102 1.39551 1.45128 1.85140 2.19756 2.23755 2.65221 3.27578 3.35243 3.77827 4.10347 4.32240 4.44996 4.48267 4.48914 4.69378 4.80957 4.92029 5.03614 5.47536 5.54060 5.75587 5.84504 6.04740 6.33638 6.65196 6.89714 6.95706 7.48689 8.12189 8.76669 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.049925 B = 0.006967 C = 0.006354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.704338 B = 4017.890569 C = 4405.610096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.382 5.382 3 C 0.073 3.927 4 C -0.230 4.230 5 C 0.024 3.976 6 C -0.231 4.231 7 C 0.472 3.528 8 O -0.613 6.613 9 N -0.589 5.589 10 C -0.319 4.319 11 H 0.052 0.948 12 C -0.020 4.020 13 N -0.935 5.935 14 Si 0.968 3.032 15 H -0.257 1.257 16 H -0.275 1.275 17 H -0.232 1.232 18 C 0.102 3.898 19 N -0.359 5.359 20 H 0.094 0.906 21 H 0.077 0.923 22 H 0.115 0.885 23 H 0.221 0.779 24 H 0.177 0.823 25 H 0.156 0.844 26 H 0.388 0.612 27 H 0.279 0.721 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.306 12.296 -14.065 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.163 5.163 3 C -0.075 4.075 4 C -0.242 4.242 5 C 0.002 3.998 6 C -0.252 4.252 7 C 0.265 3.735 8 O -0.500 6.500 9 N -0.229 5.229 10 C -0.449 4.449 11 H 0.070 0.930 12 C -0.218 4.218 13 N -0.576 5.576 14 Si 0.787 3.213 15 H -0.181 1.181 16 H -0.200 1.200 17 H -0.155 1.155 18 C -0.085 4.085 19 N -0.181 5.181 20 H 0.113 0.887 21 H 0.096 0.904 22 H 0.133 0.867 23 H 0.237 0.763 24 H 0.194 0.806 25 H 0.174 0.826 26 H 0.223 0.777 27 H 0.088 0.912 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.938 10.846 -13.711 18.808 hybrid contribution 1.536 0.119 0.734 1.707 sum -5.401 10.965 -12.977 17.827 Atomic orbital electron populations 1.22157 0.72149 1.05438 1.04719 1.48474 1.07915 1.03339 1.56557 1.23520 0.89662 0.94510 0.99831 1.19632 0.94363 0.92576 1.17605 1.21951 0.88758 0.94930 0.94150 1.22092 1.02254 1.03355 0.97504 1.17776 0.84318 0.85542 0.85846 1.90737 1.25582 1.60471 1.73198 1.42139 1.09780 1.40456 1.30507 1.18993 0.96483 1.20209 1.09197 0.93018 1.26186 1.03808 0.96742 0.95090 1.69804 1.33784 1.33271 1.20744 0.85322 0.76271 0.78912 0.80760 1.18109 1.20023 1.15511 1.23605 0.93919 0.95544 0.95390 1.76894 1.02895 1.10150 1.28113 0.88710 0.90444 0.86681 0.76304 0.80595 0.82632 0.77691 0.91192 0.83208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.77 11.44 127.77 1.46 3.23 15 2 N -0.38 -11.74 3.98 -367.39 -1.46 -13.21 15 3 C 0.07 2.00 11.52 84.32 0.97 2.97 15 4 C -0.23 -7.85 4.46 -20.19 -0.09 -7.94 15 5 C 0.02 0.66 10.13 23.85 0.24 0.90 15 6 C -0.23 -7.58 9.80 22.41 0.22 -7.36 15 7 C 0.47 22.33 7.12 85.08 0.61 22.93 15 8 O -0.61 -34.44 11.96 -4.63 -0.06 -34.49 15 9 N -0.59 -29.18 5.07 -315.11 -1.60 -30.77 15 10 C -0.32 -19.40 10.16 84.11 0.85 -18.55 15 11 H 0.05 3.75 7.38 -2.91 -0.02 3.73 15 12 C -0.02 -1.15 5.50 84.95 0.47 -0.68 15 13 N -0.94 -58.08 13.95 21.68 0.30 -57.77 15 14 Si 0.97 40.27 27.74 68.60 1.90 42.18 15 15 H -0.26 -10.09 7.11 99.48 0.71 -9.39 15 16 H -0.28 -11.32 7.11 99.48 0.71 -10.61 15 17 H -0.23 -8.22 6.52 99.48 0.65 -7.58 15 18 C 0.10 4.23 9.14 85.69 0.78 5.01 15 19 N -0.36 -14.69 12.49 -56.17 -0.70 -15.39 15 20 H 0.09 1.28 8.14 -2.39 -0.02 1.26 15 21 H 0.08 1.57 8.14 -2.38 -0.02 1.55 15 22 H 0.11 1.38 8.14 -2.39 -0.02 1.36 15 23 H 0.22 3.54 8.06 -2.91 -0.02 3.51 15 24 H 0.18 2.85 8.06 -2.91 -0.02 2.83 15 25 H 0.16 3.76 8.06 -2.91 -0.02 3.73 15 26 H 0.39 16.07 5.72 -92.71 -0.53 15.54 15 27 H 0.28 15.78 8.31 -92.71 -0.77 15.01 15 28 H 0.15 6.64 7.94 -2.91 -0.02 6.62 15 Total: -1.00 -85.86 253.15 4.49 -81.37 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.59 Total: 27.57 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 5.52 Total: 0.53 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -3.46 Total: -117.15 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.06 Total: -34.49 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 1.90 Total: 42.18 kcal Total: -85.86 4.49 -81.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701314711.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.768 kcal (2) G-P(sol) polarization free energy of solvation -85.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds