Wall clock time and date at job start Sun Mar 29 2020 21:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34421 * 125.74406 * 2 1 4 4 C 1.38317 * 107.35682 * 180.16141 * 3 2 1 5 5 C 1.46941 * 126.44569 * 179.84016 * 4 3 2 6 6 C 1.35178 * 120.00275 * 179.71004 * 5 4 3 7 7 C 1.41649 * 120.00129 * 179.97438 * 6 5 4 8 8 O 1.21793 * 119.99904 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99957 * 179.72973 * 7 6 5 10 10 C 1.36806 * 120.00125 * 180.27703 * 9 7 6 11 11 H 1.08002 * 120.00159 * 0.02562 * 10 9 7 12 12 C 1.39045 * 120.00341 * 179.97438 * 10 9 7 13 13 N 1.31374 * 119.99858 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00184 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47019 * 59.99999 * 14 12 10 16 16 H 1.48504 * 109.47036 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46993 * 299.99965 * 14 12 10 18 18 C 1.41444 * 107.11105 * 359.57323 * 4 3 2 19 19 N 1.30440 * 108.04001 * 0.26538 * 18 4 3 20 20 H 1.09000 * 109.47473 * 270.29306 * 1 2 3 21 21 H 1.09004 * 109.47137 * 30.28666 * 1 2 3 22 22 H 1.09002 * 109.47716 * 150.29104 * 1 2 3 23 23 H 1.08000 * 126.32417 * 0.02562 * 3 2 1 24 24 H 1.08001 * 119.99591 * 359.71544 * 5 4 3 25 25 H 1.08002 * 119.99603 * 0.02562 * 6 5 4 26 26 H 0.97000 * 119.99736 * 0.27143 * 9 7 6 27 27 H 0.96996 * 120.00310 * 179.97438 * 13 12 10 28 28 H 1.08007 * 125.98066 * 180.27707 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2501 1.0910 0.0000 4 6 3.5627 0.6547 -0.0037 5 6 4.7639 1.5010 -0.0084 6 6 5.9907 0.9334 -0.0058 7 6 7.1486 1.7493 -0.0108 8 8 7.0389 2.9622 -0.0170 9 7 8.3718 1.1833 -0.0027 10 6 9.4901 1.9713 -0.0018 11 1 9.3928 3.0469 -0.0072 12 6 10.7520 1.3875 0.0071 13 7 10.8704 0.0791 0.0152 14 14 12.2790 2.4635 0.0090 15 1 12.2747 3.3268 1.2171 16 1 13.4901 1.6041 0.0196 17 1 12.2862 3.3148 -1.2078 18 6 3.5312 -0.7594 0.0041 19 7 2.2823 -1.1356 0.0062 20 1 -0.3634 0.0053 1.0276 21 1 -0.3634 0.8874 -0.5183 22 1 -0.3634 -0.8926 -0.5093 23 1 1.9176 2.1185 0.0004 24 1 4.6665 2.5766 -0.0138 25 1 6.0880 -0.1422 -0.0007 26 1 8.4591 0.2173 0.0026 27 1 11.7507 -0.3282 0.0210 28 1 4.3909 -1.4132 0.0079 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701314712.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:44 Heat of formation + Delta-G solvation = 54.864312 kcal Electronic energy + Delta-G solvation = -13685.688669 eV Core-core repulsion = 11124.892649 eV Total energy + Delta-G solvation = -2560.796019 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.00473 -38.22104 -34.34494 -33.71212 -32.17692 -31.22362 -29.44638 -26.81727 -25.10809 -22.68319 -21.06536 -20.06622 -18.45465 -17.67878 -16.71573 -15.94855 -15.50756 -14.63756 -14.41699 -13.97986 -13.45543 -13.33479 -13.09689 -12.87680 -12.78367 -12.13448 -11.52392 -11.42330 -11.09601 -10.44711 -10.42943 -10.22698 -9.91998 -9.47441 -9.46290 -8.35449 -7.98011 -7.53698 -6.47257 -3.77611 1.45369 2.14550 2.46360 3.19251 3.25248 3.30179 3.39008 4.17407 4.41572 4.55617 4.81326 4.91805 5.01622 5.16506 5.33472 5.41142 5.54281 5.63333 5.90358 5.98545 6.51214 6.70087 6.89989 7.14081 7.16525 7.50931 7.71383 8.08974 8.63760 9.17486 9.56088 10.14233 10.69767 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.085795 B = 0.004657 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.279205 B = 6011.112359 C = 6322.230333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.375 5.375 3 C 0.061 3.939 4 C -0.202 4.202 5 C -0.034 4.034 6 C -0.179 4.179 7 C 0.459 3.541 8 O -0.613 6.613 9 N -0.547 5.547 10 C -0.292 4.292 11 H 0.106 0.894 12 C 0.020 3.980 13 N -0.892 5.892 14 Si 0.934 3.066 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.272 1.272 18 C 0.066 3.934 19 N -0.307 5.307 20 H 0.073 0.927 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.179 0.821 24 H 0.128 0.872 25 H 0.109 0.891 26 H 0.394 0.606 27 H 0.274 0.726 28 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.159 -2.000 -0.065 16.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.155 5.155 3 C -0.087 4.087 4 C -0.213 4.213 5 C -0.057 4.057 6 C -0.201 4.201 7 C 0.251 3.749 8 O -0.502 6.502 9 N -0.180 5.180 10 C -0.422 4.422 11 H 0.124 0.876 12 C -0.182 4.182 13 N -0.532 5.532 14 Si 0.761 3.239 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.197 1.197 18 C -0.121 4.121 19 N -0.127 5.127 20 H 0.092 0.908 21 H 0.105 0.895 22 H 0.106 0.894 23 H 0.196 0.804 24 H 0.146 0.854 25 H 0.126 0.874 26 H 0.227 0.773 27 H 0.084 0.916 28 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -16.978 -2.354 -0.064 17.140 hybrid contribution 1.391 0.496 0.017 1.477 sum -15.587 -1.858 -0.047 15.697 Atomic orbital electron populations 1.21843 0.74377 1.04434 1.03305 1.48222 1.06657 1.04001 1.56638 1.23039 0.90712 0.93241 1.01670 1.19614 0.92810 0.93004 1.15895 1.21281 0.89184 0.98380 0.96828 1.21895 0.93695 0.99422 1.05129 1.16683 0.83758 0.88432 0.86070 1.90633 1.86941 1.14535 1.58105 1.41964 1.04895 1.09557 1.61630 1.19771 0.83338 0.92861 1.46220 0.87647 1.25377 0.99560 0.96152 0.97154 1.69593 1.25525 1.09174 1.48892 0.85861 0.79665 0.79205 0.79205 1.19757 1.20880 1.19749 1.24177 0.94781 0.94810 0.98292 1.77059 1.02265 1.08034 1.25384 0.90811 0.89485 0.89351 0.80385 0.85401 0.87351 0.77263 0.91557 0.79526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 11.44 59.84 0.68 1.37 15 2 N -0.37 -4.45 3.98 -67.49 -0.27 -4.72 15 3 C 0.06 0.74 11.52 -16.39 -0.19 0.55 15 4 C -0.20 -3.04 6.08 -105.12 -0.64 -3.68 15 5 C -0.03 -0.60 9.64 -37.15 -0.36 -0.95 15 6 C -0.18 -3.56 9.33 -39.37 -0.37 -3.93 15 7 C 0.46 11.58 7.51 -14.96 -0.11 11.47 15 8 O -0.61 -17.50 15.68 5.11 0.08 -17.42 15 9 N -0.55 -14.45 5.27 -13.60 -0.07 -14.52 15 10 C -0.29 -8.27 9.68 -15.03 -0.15 -8.42 15 11 H 0.11 3.11 7.15 -52.49 -0.38 2.74 15 12 C 0.02 0.55 5.50 -17.45 -0.10 0.45 15 13 N -0.89 -24.30 13.05 55.50 0.72 -23.58 15 14 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 15 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 16 H -0.28 -6.20 7.11 56.52 0.40 -5.79 15 17 H -0.27 -6.08 7.11 56.52 0.40 -5.67 15 18 C 0.07 0.96 11.39 -16.92 -0.19 0.77 15 19 N -0.31 -4.46 12.49 30.89 0.39 -4.07 15 20 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 15 21 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 15 22 H 0.09 0.55 8.14 -51.93 -0.42 0.12 15 23 H 0.18 1.53 8.06 -52.49 -0.42 1.11 15 24 H 0.13 2.34 7.45 -52.49 -0.39 1.95 15 25 H 0.11 1.86 6.93 -52.49 -0.36 1.49 15 26 H 0.39 9.87 7.85 -40.82 -0.32 9.55 15 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 28 H 0.19 2.35 7.31 -52.48 -0.38 1.97 15 LS Contribution 260.92 15.07 3.93 3.93 Total: -1.00 -34.02 260.92 -4.32 -38.34 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -2.66 Total: 8.41 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -1.42 Total: -2.37 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.77 Total: -46.89 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.08 Total: -17.42 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -34.02 -4.32 -38.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701314712.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.205 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds