Wall clock time and date at job start Sun Mar 29 2020 21:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34421 * 125.74406 * 2 1 4 4 C 1.38317 * 107.35682 * 180.16141 * 3 2 1 5 5 C 1.46941 * 126.44569 * 179.84016 * 4 3 2 6 6 C 1.35178 * 120.00275 * 179.71004 * 5 4 3 7 7 C 1.41649 * 120.00129 * 179.97438 * 6 5 4 8 8 O 1.21793 * 119.99904 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99957 * 179.72973 * 7 6 5 10 10 C 1.36806 * 120.00125 * 180.27703 * 9 7 6 11 11 H 1.08002 * 120.00159 * 0.02562 * 10 9 7 12 12 C 1.39045 * 120.00341 * 179.97438 * 10 9 7 13 13 N 1.31374 * 119.99858 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00184 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47019 * 59.99999 * 14 12 10 16 16 H 1.48504 * 109.47036 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46993 * 299.99965 * 14 12 10 18 18 C 1.41444 * 107.11105 * 359.57323 * 4 3 2 19 19 N 1.30440 * 108.04001 * 0.26538 * 18 4 3 20 20 H 1.09000 * 109.47473 * 270.29306 * 1 2 3 21 21 H 1.09004 * 109.47137 * 30.28666 * 1 2 3 22 22 H 1.09002 * 109.47716 * 150.29104 * 1 2 3 23 23 H 1.08000 * 126.32417 * 0.02562 * 3 2 1 24 24 H 1.08001 * 119.99591 * 359.71544 * 5 4 3 25 25 H 1.08002 * 119.99603 * 0.02562 * 6 5 4 26 26 H 0.97000 * 119.99736 * 0.27143 * 9 7 6 27 27 H 0.96996 * 120.00310 * 179.97438 * 13 12 10 28 28 H 1.08007 * 125.98066 * 180.27707 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2501 1.0910 0.0000 4 6 3.5627 0.6547 -0.0037 5 6 4.7639 1.5010 -0.0084 6 6 5.9907 0.9334 -0.0058 7 6 7.1486 1.7493 -0.0108 8 8 7.0389 2.9622 -0.0170 9 7 8.3718 1.1833 -0.0027 10 6 9.4901 1.9713 -0.0018 11 1 9.3928 3.0469 -0.0072 12 6 10.7520 1.3875 0.0071 13 7 10.8704 0.0791 0.0152 14 14 12.2790 2.4635 0.0090 15 1 12.2747 3.3268 1.2171 16 1 13.4901 1.6041 0.0196 17 1 12.2862 3.3148 -1.2078 18 6 3.5312 -0.7594 0.0041 19 7 2.2823 -1.1356 0.0062 20 1 -0.3634 0.0053 1.0276 21 1 -0.3634 0.8874 -0.5183 22 1 -0.3634 -0.8926 -0.5093 23 1 1.9176 2.1185 0.0004 24 1 4.6665 2.5766 -0.0138 25 1 6.0880 -0.1422 -0.0007 26 1 8.4591 0.2173 0.0026 27 1 11.7507 -0.3282 0.0210 28 1 4.3909 -1.4132 0.0079 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701314712.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:44 Heat of formation + Delta-G solvation = 30.125316 kcal Electronic energy + Delta-G solvation = -13686.761432 eV Core-core repulsion = 11124.892649 eV Total energy + Delta-G solvation = -2561.868783 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.05038 -40.18415 -36.15426 -35.10153 -33.44504 -33.20167 -30.62758 -27.96549 -26.78623 -24.18484 -22.13402 -21.40250 -20.30056 -19.42151 -18.08615 -17.40590 -16.60523 -16.36701 -15.85244 -15.32208 -15.30464 -14.96146 -14.42483 -13.83958 -13.61644 -13.50928 -13.11184 -12.93959 -12.84036 -12.43582 -12.09816 -11.57785 -11.56985 -11.15709 -10.44936 -10.41836 -10.03782 -8.82795 -8.49161 -5.91726 0.14319 1.02034 1.42460 1.45702 1.54633 1.63396 2.02626 2.31741 2.71211 3.37451 3.38684 3.70458 3.94332 4.25256 4.29178 4.44915 4.47391 4.63181 4.72694 4.75390 4.93047 5.38823 5.51497 5.61582 5.66560 6.06114 6.07444 6.61028 6.66177 7.11554 7.56346 8.14664 8.68126 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.085795 B = 0.004657 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.279205 B = 6011.112359 C = 6322.230333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.368 5.368 3 C 0.096 3.904 4 C -0.250 4.250 5 C 0.022 3.978 6 C -0.226 4.226 7 C 0.464 3.536 8 O -0.654 6.654 9 N -0.562 5.562 10 C -0.334 4.334 11 H 0.082 0.918 12 C -0.016 4.016 13 N -0.915 5.915 14 Si 0.999 3.001 15 H -0.270 1.270 16 H -0.268 1.268 17 H -0.270 1.270 18 C 0.064 3.936 19 N -0.333 5.333 20 H 0.090 0.910 21 H 0.120 0.880 22 H 0.093 0.907 23 H 0.221 0.779 24 H 0.122 0.878 25 H 0.132 0.868 26 H 0.397 0.603 27 H 0.280 0.720 28 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.344 -1.900 -0.072 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.147 5.147 3 C -0.054 4.054 4 C -0.261 4.261 5 C -0.001 4.001 6 C -0.248 4.248 7 C 0.258 3.742 8 O -0.546 6.546 9 N -0.196 5.196 10 C -0.464 4.464 11 H 0.100 0.900 12 C -0.216 4.216 13 N -0.555 5.555 14 Si 0.822 3.178 15 H -0.195 1.195 16 H -0.193 1.193 17 H -0.195 1.195 18 C -0.122 4.122 19 N -0.154 5.154 20 H 0.109 0.891 21 H 0.139 0.861 22 H 0.112 0.888 23 H 0.237 0.763 24 H 0.140 0.860 25 H 0.150 0.850 26 H 0.231 0.769 27 H 0.090 0.910 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -19.210 -2.307 -0.070 19.348 hybrid contribution 1.609 0.477 0.021 1.678 sum -17.601 -1.830 -0.049 17.696 Atomic orbital electron populations 1.22333 0.71214 1.06435 1.05083 1.48730 1.08444 1.03234 1.54288 1.23663 0.89633 0.94958 0.97177 1.19534 0.93034 0.93118 1.20417 1.21405 0.89597 0.98361 0.90696 1.21632 0.92287 1.00062 1.10826 1.17472 0.84759 0.88347 0.83656 1.90580 1.87728 1.16603 1.59711 1.41951 1.04981 1.09494 1.63144 1.19727 0.84969 0.92204 1.49514 0.90009 1.26197 1.01817 0.97573 0.96016 1.69659 1.26468 1.10236 1.49171 0.84904 0.76183 0.77632 0.79098 1.19518 1.19259 1.19497 1.24399 0.95354 0.94921 0.97555 1.77050 1.02433 1.09536 1.26392 0.89108 0.86131 0.88841 0.76301 0.86028 0.85030 0.76910 0.91037 0.78736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 11.44 127.77 1.46 2.25 15 2 N -0.37 -7.33 3.98 -367.42 -1.46 -8.79 15 3 C 0.10 1.94 11.52 84.32 0.97 2.91 15 4 C -0.25 -6.94 6.08 -20.19 -0.12 -7.06 15 5 C 0.02 0.76 9.64 23.85 0.23 0.99 15 6 C -0.23 -9.09 9.33 22.41 0.21 -8.88 15 7 C 0.46 24.27 7.51 85.08 0.64 24.91 15 8 O -0.65 -38.72 15.68 -4.65 -0.07 -38.79 15 9 N -0.56 -30.96 5.27 -315.11 -1.66 -32.62 15 10 C -0.33 -19.77 9.68 84.11 0.81 -18.96 15 11 H 0.08 5.10 7.15 -2.91 -0.02 5.08 15 12 C -0.02 -0.86 5.50 84.96 0.47 -0.39 15 13 N -0.92 -50.65 13.05 21.68 0.28 -50.36 15 14 Si 1.00 43.60 29.55 68.60 2.03 45.63 15 15 H -0.27 -11.60 7.11 99.48 0.71 -10.90 15 16 H -0.27 -10.94 7.11 99.48 0.71 -10.23 15 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 18 C 0.06 1.75 11.39 85.69 0.98 2.72 15 19 N -0.33 -8.89 12.49 -56.17 -0.70 -9.59 15 20 H 0.09 0.59 8.14 -2.39 -0.02 0.57 15 21 H 0.12 0.33 8.14 -2.38 -0.02 0.31 15 22 H 0.09 0.80 8.14 -2.39 -0.02 0.78 15 23 H 0.22 2.51 8.06 -2.91 -0.02 2.49 15 24 H 0.12 4.32 7.45 -2.91 -0.02 4.30 15 25 H 0.13 4.56 6.93 -2.91 -0.02 4.54 15 26 H 0.40 20.77 7.85 -92.71 -0.73 20.04 15 27 H 0.28 14.42 8.31 -92.71 -0.77 13.65 15 28 H 0.20 4.75 7.31 -2.91 -0.02 4.73 15 Total: -1.00 -76.07 260.92 4.52 -71.56 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.46 Total: 24.47 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 5.65 Total: -1.50 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -3.54 Total: -101.37 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -0.07 Total: -38.79 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -76.07 4.52 -71.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701314712.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.683 kcal (2) G-P(sol) polarization free energy of solvation -76.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds