Wall clock time and date at job start Sun Mar 29 2020 21:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.43194 * 179.97438 * 358.11036 * 3 2 1 5 5 O 1.21669 * 119.99993 * 134.11364 * 4 3 2 6 6 N 1.34780 * 120.00308 * 314.10801 * 4 3 2 7 7 C 1.36818 * 119.99678 * 5.71807 * 6 4 3 8 8 H 1.08002 * 120.00023 * 330.74141 * 7 6 4 9 9 C 1.39075 * 119.99575 * 150.74731 * 7 6 4 10 10 N 1.31348 * 120.00216 * 343.30560 * 9 7 6 11 11 Si 1.86801 * 119.99482 * 163.30666 * 9 7 6 12 12 H 1.48497 * 109.47416 * 59.99775 * 11 9 7 13 13 H 1.48504 * 109.46862 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47297 * 299.99685 * 11 9 7 15 15 C 1.46501 * 119.99873 * 185.43677 * 6 4 3 16 16 C 1.54261 * 110.03441 * 55.53839 * 15 6 4 17 17 C 1.54955 * 104.16303 * 217.13362 * 16 15 6 18 18 C 1.54888 * 102.77798 * 37.89024 * 17 16 15 19 19 C 1.53878 * 110.03253 * 298.32053 * 15 6 4 20 20 H 1.09001 * 109.46679 * 227.77293 * 1 2 3 21 21 H 1.08993 * 109.47840 * 347.77445 * 1 2 3 22 22 H 1.09002 * 109.47066 * 107.78167 * 1 2 3 23 23 H 0.97007 * 119.99698 * 185.07229 * 10 9 7 24 24 H 1.09005 * 110.01366 * 176.93059 * 15 6 4 25 25 H 1.09002 * 110.48821 * 335.78453 * 16 15 6 26 26 H 1.09006 * 110.48139 * 98.42505 * 16 15 6 27 27 H 1.09002 * 110.72065 * 279.57711 * 17 16 15 28 28 H 1.09000 * 110.92780 * 156.29716 * 17 16 15 29 29 H 1.09002 * 110.48908 * 203.40718 * 18 17 16 30 30 H 1.08999 * 110.60155 * 80.81377 * 18 17 16 31 31 H 1.09006 * 110.02997 * 238.57105 * 19 15 6 32 32 H 1.08999 * 110.03501 * 0.02562 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0005 0.0000 5 8 4.6863 0.7340 -0.7565 6 7 4.7519 -0.8119 0.8381 7 6 4.0729 -1.7193 1.6046 8 1 3.0606 -1.5112 1.9181 9 6 4.6865 -2.9095 1.9801 10 7 5.7647 -3.3194 1.3518 11 14 3.9770 -3.9254 3.3780 12 1 2.5878 -4.3283 3.0418 13 1 4.8088 -5.1389 3.5797 14 1 3.9701 -3.1168 4.6236 15 6 6.2120 -0.7274 0.9238 16 6 6.6390 0.7158 1.2621 17 6 7.9343 0.9307 0.4393 18 6 7.6273 0.1858 -0.8836 19 6 6.8404 -1.0647 -0.4398 20 1 -0.3633 -0.6907 0.7610 21 1 -0.3634 1.0042 0.2176 22 1 -0.3633 -0.3138 -0.9786 23 1 6.1501 -4.1840 1.5634 24 1 6.5813 -1.4144 1.6853 25 1 5.8694 1.4235 0.9538 26 1 6.8429 0.8131 2.3285 27 1 8.7907 0.4840 0.9444 28 1 8.1066 1.9910 0.2544 29 1 8.5525 -0.1029 -1.3824 30 1 7.0183 0.8064 -1.5408 31 1 7.5154 -1.9147 -0.3398 32 1 6.0590 -1.2907 -1.1654 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706267586.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:13 Heat of formation + Delta-G solvation = 12.006271 kcal Electronic energy + Delta-G solvation = -15308.003601 eV Core-core repulsion = 12848.889461 eV Total energy + Delta-G solvation = -2459.114140 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.11818 -36.02686 -34.36183 -33.26290 -31.43368 -28.43464 -27.71387 -26.82634 -24.77778 -21.67835 -19.84102 -18.94897 -18.41271 -15.82292 -15.02816 -14.78600 -14.59987 -13.99881 -13.84080 -13.47965 -13.10934 -13.08170 -12.76351 -12.17469 -11.72202 -11.31834 -11.14465 -10.74948 -10.43027 -10.31982 -10.24122 -10.11058 -9.92645 -9.62816 -9.35757 -9.34625 -8.94890 -8.60599 -7.63446 -6.44802 -4.01440 2.64991 3.13602 3.17100 3.18774 3.33685 4.04614 4.54000 4.57387 5.03929 5.38713 5.59680 5.64790 5.80441 5.86961 5.87347 5.97543 6.37723 6.41227 6.48887 6.57572 6.60157 6.70292 6.77742 6.86294 6.98427 7.27167 7.36357 7.43682 7.51798 7.81748 8.22631 8.40244 8.99822 9.44783 9.87079 10.58749 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.017632 B = 0.014602 C = 0.008764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.667022 B = 1917.033243 C = 3194.242353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 C -0.179 4.179 3 C -0.149 4.149 4 C 0.553 3.447 5 O -0.586 6.586 6 N -0.413 5.413 7 C -0.338 4.338 8 H 0.094 0.906 9 C 0.042 3.958 10 N -0.858 5.858 11 Si 0.921 3.079 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.165 3.835 16 C -0.140 4.140 17 C -0.114 4.114 18 C -0.120 4.120 19 C -0.099 4.099 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.272 0.728 24 H 0.109 0.891 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.949 2.390 1.015 3.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.182 4.182 3 C -0.152 4.152 4 C 0.343 3.657 5 O -0.473 6.473 6 N -0.129 5.129 7 C -0.467 4.467 8 H 0.111 0.889 9 C -0.164 4.164 10 N -0.494 5.494 11 Si 0.748 3.252 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.197 1.197 15 C 0.061 3.939 16 C -0.178 4.178 17 C -0.152 4.152 18 C -0.158 4.158 19 C -0.137 4.137 20 H 0.097 0.903 21 H 0.094 0.906 22 H 0.095 0.905 23 H 0.083 0.917 24 H 0.127 0.873 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.410 2.563 0.736 3.016 hybrid contribution -0.469 -0.773 0.720 1.156 sum -1.878 1.790 1.456 2.976 Atomic orbital electron populations 1.18780 0.84796 1.02502 1.02698 1.22305 0.93681 1.01220 1.01012 1.21361 0.93054 1.00231 1.00511 1.14928 0.82227 0.85863 0.82680 1.90668 1.68283 1.46421 1.41959 1.43590 1.05610 1.30313 1.33371 1.19560 0.99972 0.98162 1.28960 0.88869 1.25357 0.96197 0.96795 0.98079 1.69901 1.21026 1.19749 1.38723 0.86080 0.79006 0.78825 0.81330 1.19737 1.20722 1.19680 1.21562 0.79503 0.94386 0.98445 1.22814 0.97705 0.99148 0.98123 1.22327 0.97090 0.99079 0.96721 1.22332 0.98512 0.97944 0.96966 1.22079 0.98741 0.95846 0.97027 0.90339 0.90616 0.90509 0.91707 0.87313 0.90676 0.93064 0.92566 0.92772 0.93610 0.91161 0.92335 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.43 10.32 34.37 0.35 -0.08 16 2 C -0.18 -3.62 14.13 -37.12 -0.52 -4.15 16 3 C -0.15 -3.59 11.89 -38.84 -0.46 -4.05 16 4 C 0.55 14.55 6.34 -14.34 -0.09 14.46 16 5 O -0.59 -15.91 13.12 5.22 0.07 -15.84 16 6 N -0.41 -10.80 2.52 -109.24 -0.28 -11.07 16 7 C -0.34 -8.89 8.94 -15.02 -0.13 -9.02 16 8 H 0.09 2.41 7.05 -52.49 -0.37 2.04 16 9 C 0.04 1.06 4.91 -17.45 -0.09 0.98 16 10 N -0.86 -22.13 10.82 55.50 0.60 -21.53 16 11 Si 0.92 19.48 29.59 -169.99 -5.03 14.45 16 12 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 13 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 14 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 15 C 0.16 3.97 2.30 -66.81 -0.15 3.81 16 16 C -0.14 -2.99 6.08 -25.04 -0.15 -3.14 16 17 C -0.11 -2.12 6.91 -24.70 -0.17 -2.30 16 18 C -0.12 -2.40 6.39 -25.07 -0.16 -2.56 16 19 C -0.10 -2.28 5.42 -25.61 -0.14 -2.42 16 20 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 21 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.27 6.65 8.32 -40.82 -0.34 6.31 16 24 H 0.11 2.77 5.89 -51.93 -0.31 2.46 16 25 H 0.07 1.75 6.09 -51.93 -0.32 1.44 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.51 7.29 -51.93 -0.38 1.14 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.06 1.55 7.15 -51.93 -0.37 1.18 16 LS Contribution 267.90 15.07 4.04 4.04 Total: -1.00 -29.04 267.90 -6.58 -35.61 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -4.26 Total: 2.82 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.72 Total: -8.47 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.32 Total: -32.60 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.07 Total: -15.84 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.04 -6.58 -35.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706267586.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.621 kcal (2) G-P(sol) polarization free energy of solvation -29.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds