Wall clock time and date at job start Sun Mar 29 2020 21:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.43194 * 179.97438 * 358.11036 * 3 2 1 5 5 O 1.21669 * 119.99993 * 134.11364 * 4 3 2 6 6 N 1.34780 * 120.00308 * 314.10801 * 4 3 2 7 7 C 1.36818 * 119.99678 * 5.71807 * 6 4 3 8 8 H 1.08002 * 120.00023 * 330.74141 * 7 6 4 9 9 C 1.39075 * 119.99575 * 150.74731 * 7 6 4 10 10 N 1.31348 * 120.00216 * 343.30560 * 9 7 6 11 11 Si 1.86801 * 119.99482 * 163.30666 * 9 7 6 12 12 H 1.48497 * 109.47416 * 59.99775 * 11 9 7 13 13 H 1.48504 * 109.46862 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47297 * 299.99685 * 11 9 7 15 15 C 1.46501 * 119.99873 * 185.43677 * 6 4 3 16 16 C 1.54261 * 110.03441 * 55.53839 * 15 6 4 17 17 C 1.54955 * 104.16303 * 217.13362 * 16 15 6 18 18 C 1.54888 * 102.77798 * 37.89024 * 17 16 15 19 19 C 1.53878 * 110.03253 * 298.32053 * 15 6 4 20 20 H 1.09001 * 109.46679 * 227.77293 * 1 2 3 21 21 H 1.08993 * 109.47840 * 347.77445 * 1 2 3 22 22 H 1.09002 * 109.47066 * 107.78167 * 1 2 3 23 23 H 0.97007 * 119.99698 * 185.07229 * 10 9 7 24 24 H 1.09005 * 110.01366 * 176.93059 * 15 6 4 25 25 H 1.09002 * 110.48821 * 335.78453 * 16 15 6 26 26 H 1.09006 * 110.48139 * 98.42505 * 16 15 6 27 27 H 1.09002 * 110.72065 * 279.57711 * 17 16 15 28 28 H 1.09000 * 110.92780 * 156.29716 * 17 16 15 29 29 H 1.09002 * 110.48908 * 203.40718 * 18 17 16 30 30 H 1.08999 * 110.60155 * 80.81377 * 18 17 16 31 31 H 1.09006 * 110.02997 * 238.57105 * 19 15 6 32 32 H 1.08999 * 110.03501 * 0.02562 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0005 0.0000 5 8 4.6863 0.7340 -0.7565 6 7 4.7519 -0.8119 0.8381 7 6 4.0729 -1.7193 1.6046 8 1 3.0606 -1.5112 1.9181 9 6 4.6865 -2.9095 1.9801 10 7 5.7647 -3.3194 1.3518 11 14 3.9770 -3.9254 3.3780 12 1 2.5878 -4.3283 3.0418 13 1 4.8088 -5.1389 3.5797 14 1 3.9701 -3.1168 4.6236 15 6 6.2120 -0.7274 0.9238 16 6 6.6390 0.7158 1.2621 17 6 7.9343 0.9307 0.4393 18 6 7.6273 0.1858 -0.8836 19 6 6.8404 -1.0647 -0.4398 20 1 -0.3633 -0.6907 0.7610 21 1 -0.3634 1.0042 0.2176 22 1 -0.3633 -0.3138 -0.9786 23 1 6.1501 -4.1840 1.5634 24 1 6.5813 -1.4144 1.6853 25 1 5.8694 1.4235 0.9538 26 1 6.8429 0.8131 2.3285 27 1 8.7907 0.4840 0.9444 28 1 8.1066 1.9910 0.2544 29 1 8.5525 -0.1029 -1.3824 30 1 7.0183 0.8064 -1.5408 31 1 7.5154 -1.9147 -0.3398 32 1 6.0590 -1.2907 -1.1654 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706267586.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:13 Heat of formation + Delta-G solvation = -4.464572 kcal Electronic energy + Delta-G solvation = -15308.717830 eV Core-core repulsion = 12848.889461 eV Total energy + Delta-G solvation = -2459.828370 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.00882 -37.84273 -36.26069 -34.83976 -33.38070 -29.88642 -29.46120 -28.51950 -26.71213 -23.48585 -21.48280 -20.81408 -20.30432 -17.73563 -16.76232 -16.64759 -16.37823 -15.73952 -15.55577 -15.12737 -14.57636 -14.31528 -14.28403 -13.94175 -13.52219 -13.16124 -12.89722 -12.47986 -12.24351 -12.05675 -11.86103 -11.82920 -11.68380 -11.32425 -11.02252 -11.00781 -10.82987 -10.54477 -9.58761 -8.37178 -6.02426 0.87027 1.42762 1.48111 1.53980 1.65057 2.27262 2.68653 2.84797 3.14235 3.73087 3.91347 3.95963 4.21249 4.64799 4.71134 4.80215 4.83814 4.84582 4.85528 4.89028 4.93749 5.02933 5.13735 5.16071 5.24526 5.38066 5.52543 5.58004 5.67092 5.88823 6.41354 6.59569 7.02635 7.49121 7.92332 8.66462 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.017632 B = 0.014602 C = 0.008764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.667022 B = 1917.033243 C = 3194.242353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.122 4.122 3 C -0.245 4.245 4 C 0.540 3.460 5 O -0.612 6.612 6 N -0.423 5.423 7 C -0.366 4.366 8 H 0.089 0.911 9 C 0.004 3.996 10 N -0.880 5.880 11 Si 0.992 3.008 12 H -0.266 1.266 13 H -0.276 1.276 14 H -0.266 1.266 15 C 0.158 3.842 16 C -0.137 4.137 17 C -0.103 4.103 18 C -0.113 4.113 19 C -0.091 4.091 20 H 0.102 0.898 21 H 0.107 0.893 22 H 0.104 0.896 23 H 0.276 0.724 24 H 0.093 0.907 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 2.239 1.982 4.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.125 4.125 3 C -0.248 4.248 4 C 0.331 3.669 5 O -0.501 6.501 6 N -0.138 5.138 7 C -0.493 4.493 8 H 0.107 0.893 9 C -0.200 4.200 10 N -0.517 5.517 11 Si 0.814 3.186 12 H -0.191 1.191 13 H -0.201 1.201 14 H -0.191 1.191 15 C 0.054 3.946 16 C -0.175 4.175 17 C -0.141 4.141 18 C -0.151 4.151 19 C -0.130 4.130 20 H 0.120 0.880 21 H 0.126 0.874 22 H 0.123 0.877 23 H 0.086 0.914 24 H 0.111 0.889 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -2.363 2.416 1.700 3.783 hybrid contribution -0.298 -0.736 0.377 0.879 sum -2.661 1.680 2.077 3.770 Atomic orbital electron populations 1.19296 0.79802 1.05164 1.05072 1.23698 0.95063 0.97002 0.96786 1.21412 0.93656 1.04722 1.04980 1.15317 0.83591 0.85592 0.82378 1.90601 1.69312 1.47331 1.42891 1.43788 1.06349 1.30342 1.33362 1.19771 1.00408 0.99127 1.30025 0.89291 1.26226 0.96466 0.97431 0.99864 1.70008 1.21861 1.20164 1.39628 0.85025 0.78421 0.77156 0.77991 1.19103 1.20057 1.19061 1.21653 0.79015 0.95639 0.98268 1.22770 0.98562 0.96674 0.99520 1.22325 0.96182 1.00491 0.95087 1.22266 0.98896 0.96158 0.97776 1.21974 0.97805 0.97431 0.95772 0.88007 0.87448 0.87749 0.91372 0.88949 0.93132 0.91610 0.90030 0.90567 0.90509 0.93216 0.92428 0.96126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.88 10.32 70.18 0.72 -0.16 16 2 C -0.12 -4.82 14.13 31.12 0.44 -4.38 16 3 C -0.24 -12.19 11.89 30.01 0.36 -11.84 16 4 C 0.54 29.96 6.34 85.49 0.54 30.50 16 5 O -0.61 -35.13 13.12 -4.25 -0.06 -35.19 16 6 N -0.42 -23.13 2.52 -617.74 -1.56 -24.68 16 7 C -0.37 -19.78 8.94 84.12 0.75 -19.03 16 8 H 0.09 4.74 7.05 -2.91 -0.02 4.72 16 9 C 0.00 0.22 4.91 84.97 0.42 0.64 16 10 N -0.88 -46.24 10.82 21.68 0.23 -46.01 16 11 Si 0.99 39.67 29.59 68.60 2.03 41.70 16 12 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 13 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 14 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 15 C 0.16 7.85 2.30 45.71 0.11 7.96 16 16 C -0.14 -5.94 6.08 31.69 0.19 -5.75 16 17 C -0.10 -3.69 6.91 31.91 0.22 -3.47 16 18 C -0.11 -4.53 6.39 31.67 0.20 -4.32 16 19 C -0.09 -4.38 5.42 31.32 0.17 -4.21 16 20 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 21 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.28 13.57 8.32 -92.70 -0.77 12.80 16 24 H 0.09 4.84 5.89 -2.38 -0.01 4.83 16 25 H 0.05 2.44 6.09 -2.39 -0.01 2.42 16 26 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 27 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.05 2.18 7.29 -2.39 -0.02 2.17 16 31 H 0.06 2.69 8.14 -2.38 -0.02 2.67 16 32 H 0.02 1.10 7.15 -2.39 -0.02 1.09 16 Total: -1.00 -66.77 267.90 5.88 -60.89 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 1.11 Total: 17.34 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 4.12 Total: -14.05 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -1.32 Total: -70.69 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.06 Total: -35.19 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -66.77 5.88 -60.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706267586.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.424 kcal (2) G-P(sol) polarization free energy of solvation -66.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds