Wall clock time and date at job start Sun Mar 29 2020 21:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33484 * 120.00477 * 2 1 4 4 C 1.46252 * 119.99982 * 180.02562 * 3 2 1 5 5 C 1.35362 * 119.99693 * 186.20383 * 4 3 2 6 6 C 1.41783 * 120.00131 * 9.56569 * 5 4 3 7 7 O 1.21782 * 119.99646 * 6.96378 * 6 5 4 8 8 N 1.34771 * 119.99791 * 186.97086 * 6 5 4 9 9 C 1.36689 * 119.99735 * 174.54338 * 8 6 5 10 10 H 1.08004 * 119.99973 * 23.41418 * 9 8 6 11 11 C 1.39136 * 119.99999 * 203.41562 * 9 8 6 12 12 N 1.31320 * 120.00045 * 2.78244 * 11 9 8 13 13 Si 1.86806 * 120.00108 * 182.78871 * 11 9 8 14 14 H 1.48501 * 109.47136 * 179.97438 * 13 11 9 15 15 H 1.48501 * 109.46626 * 299.99797 * 13 11 9 16 16 H 1.48498 * 109.47081 * 59.99584 * 13 11 9 17 17 C 1.46496 * 120.00272 * 354.53666 * 8 6 5 18 18 C 1.53002 * 117.50336 * 310.47198 * 17 8 6 19 19 C 1.52995 * 117.50408 * 241.80763 * 17 8 6 20 20 H 1.08998 * 109.47441 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47018 * 300.00178 * 1 2 3 22 22 H 1.08998 * 109.47314 * 59.99413 * 1 2 3 23 23 H 1.07998 * 119.99510 * 179.97438 * 2 1 3 24 24 H 1.08007 * 119.99490 * 0.02562 * 3 2 1 25 25 H 1.07993 * 120.00379 * 6.20441 * 4 3 2 26 26 H 1.07995 * 119.99881 * 189.55969 * 5 4 3 27 27 H 0.96999 * 119.99917 * 179.97438 * 12 11 9 28 28 H 1.09004 * 115.54643 * 96.14233 * 17 8 6 29 29 H 1.09004 * 117.49107 * 359.97438 * 18 17 8 30 30 H 1.08996 * 117.49720 * 145.01325 * 18 17 8 31 31 H 1.08992 * 117.50483 * 214.98027 * 19 17 8 32 32 H 1.08998 * 117.49742 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1745 1.1560 0.0000 4 6 3.6371 1.1558 -0.0006 5 6 4.3140 2.3212 0.1261 6 6 3.6200 3.5113 0.4613 7 8 2.4401 3.4648 0.7591 8 7 4.2662 4.6940 0.4500 9 6 3.5738 5.8530 0.6635 10 1 2.6360 5.8311 1.1988 11 6 4.0772 7.0611 0.1913 12 7 5.1894 7.0811 -0.5066 13 14 3.1710 8.6548 0.5502 14 1 3.9083 9.7912 -0.0582 15 1 1.8035 8.5867 -0.0247 16 1 3.0812 8.8531 2.0191 17 6 5.7105 4.7373 0.2092 18 6 6.5927 3.7965 1.0324 19 6 6.5960 5.2994 1.3231 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 2.0469 -0.9353 0.0004 24 1 1.6345 2.0913 0.0004 25 1 4.1770 0.2261 -0.1021 26 1 5.3826 2.3444 -0.0280 27 1 5.5401 7.9233 -0.8361 28 1 6.0097 4.9358 -0.8200 29 1 6.0982 3.1456 1.7535 30 1 7.4723 3.3763 0.5449 31 1 7.4779 5.8672 1.0269 32 1 6.1039 5.6373 2.2350 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706798140.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:46 Heat of formation + Delta-G solvation = 27.053470 kcal Electronic energy + Delta-G solvation = -14904.893610 eV Core-core repulsion = 12446.431965 eV Total energy + Delta-G solvation = -2458.461645 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.88636 -38.14938 -36.20197 -35.00126 -33.12590 -32.84624 -28.53795 -26.78671 -24.01507 -23.12915 -22.50727 -20.72565 -19.65743 -18.88794 -17.64322 -16.98937 -16.13393 -16.01139 -15.36818 -15.07571 -14.66686 -14.10474 -14.05844 -13.76202 -13.42970 -13.03949 -12.98847 -12.50079 -12.32561 -12.26042 -12.23313 -12.06871 -11.58066 -11.39012 -10.97932 -10.67638 -9.93356 -9.67520 -9.01939 -8.27138 -5.91063 0.01633 1.38434 1.39603 1.48196 1.89415 2.26763 2.72002 3.03373 3.18127 3.25334 4.02446 4.19795 4.24203 4.37007 4.41054 4.55000 4.72174 4.76671 4.82563 4.83760 4.88888 5.11315 5.16970 5.33437 5.39033 5.42726 5.50030 5.67589 5.97596 6.01877 6.23148 6.59383 7.22424 7.52089 8.12994 8.71093 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029913 B = 0.008617 C = 0.006954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.815024 B = 3248.443974 C = 4025.420795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.139 4.139 3 C -0.180 4.180 4 C -0.051 4.051 5 C -0.215 4.215 6 C 0.461 3.539 7 O -0.631 6.631 8 N -0.428 5.428 9 C -0.344 4.344 10 H 0.068 0.932 11 C 0.007 3.993 12 N -0.878 5.878 13 Si 0.984 3.016 14 H -0.266 1.266 15 H -0.279 1.279 16 H -0.272 1.272 17 C 0.109 3.891 18 C -0.182 4.182 19 C -0.155 4.155 20 H 0.086 0.914 21 H 0.055 0.945 22 H 0.061 0.939 23 H 0.133 0.867 24 H 0.117 0.883 25 H 0.161 0.839 26 H 0.149 0.851 27 H 0.273 0.727 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.099 0.901 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.403 -9.279 -0.217 9.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.157 4.157 3 C -0.198 4.198 4 C -0.072 4.072 5 C -0.235 4.235 6 C 0.256 3.744 7 O -0.523 6.523 8 N -0.144 5.144 9 C -0.472 4.472 10 H 0.086 0.914 11 C -0.197 4.197 12 N -0.515 5.515 13 Si 0.808 3.192 14 H -0.191 1.191 15 H -0.205 1.205 16 H -0.197 1.197 17 C 0.005 3.995 18 C -0.219 4.219 19 C -0.192 4.192 20 H 0.105 0.895 21 H 0.074 0.926 22 H 0.080 0.920 23 H 0.151 0.849 24 H 0.134 0.866 25 H 0.178 0.822 26 H 0.166 0.834 27 H 0.083 0.917 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.150 0.850 31 H 0.117 0.883 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.019 -9.064 -0.174 9.288 hybrid contribution -0.437 1.348 0.211 1.433 sum 1.582 -7.716 0.037 7.877 Atomic orbital electron populations 1.20879 0.92418 1.03251 1.01597 1.23885 0.96897 0.97244 0.97721 1.22909 0.94998 1.00112 1.01801 1.22776 0.93610 0.97474 0.93355 1.22487 1.01756 0.92729 1.06546 1.17737 0.86981 0.85379 0.84274 1.90438 1.18375 1.87066 1.56397 1.43334 1.06215 1.05249 1.59643 1.19503 1.06068 0.85602 1.36018 0.91388 1.25994 0.97045 1.01645 0.94985 1.69919 1.20035 1.28022 1.33487 0.85150 0.78114 0.77347 0.78628 1.19062 1.20461 1.19683 1.21202 0.78624 1.03400 0.96289 1.23672 1.02287 0.92770 1.03216 1.22745 1.01499 0.95601 0.99397 0.89471 0.92615 0.91987 0.84910 0.86612 0.82173 0.83358 0.91692 0.88071 0.89454 0.85048 0.88254 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.11 10.19 71.24 0.73 -2.38 16 2 C -0.14 -3.95 9.99 24.61 0.25 -3.70 16 3 C -0.18 -6.79 8.50 23.28 0.20 -6.59 16 4 C -0.05 -1.76 9.88 23.69 0.23 -1.52 16 5 C -0.21 -8.64 8.31 22.48 0.19 -8.46 16 6 C 0.46 24.09 7.15 85.12 0.61 24.70 16 7 O -0.63 -37.03 12.72 -4.61 -0.06 -37.09 16 8 N -0.43 -23.07 2.93 -622.96 -1.82 -24.89 16 9 C -0.34 -20.15 9.18 84.15 0.77 -19.37 16 10 H 0.07 4.28 7.35 -2.91 -0.02 4.26 16 11 C 0.01 0.37 5.26 84.99 0.45 0.82 16 12 N -0.88 -45.98 10.19 21.70 0.22 -45.76 16 13 Si 0.98 43.40 29.56 68.60 2.03 45.43 16 14 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 17 C 0.11 4.96 3.44 44.99 0.15 5.11 16 18 C -0.18 -6.26 7.87 30.62 0.24 -6.02 16 19 C -0.15 -6.30 9.43 30.62 0.29 -6.01 16 20 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 21 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 22 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.13 2.86 8.05 -2.91 -0.02 2.84 16 24 H 0.12 5.55 5.12 -10.41 -0.05 5.50 16 25 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 26 H 0.15 5.08 5.25 -2.91 -0.02 5.06 16 27 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 28 H 0.10 4.83 7.49 -2.38 -0.02 4.81 16 29 H 0.09 3.05 7.32 -2.38 -0.02 3.04 16 30 H 0.13 3.45 8.14 -2.39 -0.02 3.43 16 31 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 32 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -67.90 271.73 5.53 -62.36 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 1.06 Total: 23.36 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 4.10 Total: -23.42 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -1.60 Total: -70.65 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -0.06 Total: -37.09 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -67.90 5.53 -62.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706798140.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.416 kcal (2) G-P(sol) polarization free energy of solvation -67.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds