Wall clock time and date at job start Sun Mar 29 2020 21:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33475 * 120.00203 * 2 1 4 4 C 1.46265 * 119.99976 * 180.02562 * 3 2 1 5 5 C 1.35354 * 119.99922 * 180.02562 * 4 3 2 6 6 C 1.41778 * 120.00007 * 179.97438 * 5 4 3 7 7 O 1.21788 * 119.99706 * 354.28061 * 6 5 4 8 8 N 1.34772 * 120.00109 * 174.27644 * 6 5 4 9 9 C 1.36691 * 119.99957 * 184.97806 * 8 6 5 10 10 H 1.08000 * 120.00014 * 17.05857 * 9 8 6 11 11 C 1.39136 * 120.00105 * 197.05587 * 9 8 6 12 12 N 1.31318 * 119.99747 * 14.88578 * 11 9 8 13 13 Si 1.86802 * 120.00303 * 194.88723 * 11 9 8 14 14 H 1.48496 * 109.47147 * 270.00219 * 13 11 9 15 15 H 1.48497 * 109.46867 * 29.99809 * 13 11 9 16 16 H 1.48499 * 109.47296 * 149.99693 * 13 11 9 17 17 C 1.46493 * 120.00119 * 4.98132 * 8 6 5 18 18 C 1.53003 * 117.49906 * 307.00830 * 17 8 6 19 19 C 1.53003 * 117.50115 * 238.34961 * 17 8 6 20 20 H 1.09000 * 109.46875 * 300.00252 * 1 2 3 21 21 H 1.09002 * 109.47246 * 59.99607 * 1 2 3 22 22 H 1.09000 * 109.47604 * 180.02562 * 1 2 3 23 23 H 1.08002 * 119.99444 * 179.97438 * 2 1 3 24 24 H 1.08002 * 120.00353 * 359.97438 * 3 2 1 25 25 H 1.07997 * 120.00137 * 359.97438 * 4 3 2 26 26 H 1.07997 * 119.99941 * 359.97438 * 5 4 3 27 27 H 0.97008 * 119.99994 * 180.02562 * 12 11 9 28 28 H 1.08997 * 115.55734 * 92.67472 * 17 8 6 29 29 H 1.08999 * 117.49862 * 359.97438 * 18 17 8 30 30 H 1.08998 * 117.50421 * 145.01995 * 18 17 8 31 31 H 1.09002 * 117.50289 * 214.98476 * 19 17 8 32 32 H 1.09000 * 117.49717 * 359.97072 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1744 1.1559 0.0000 4 6 3.6371 1.1558 -0.0006 5 6 4.3139 2.3280 0.0000 6 6 5.7316 2.3280 0.0000 7 8 6.3405 1.2784 0.1046 8 7 6.4055 3.4894 -0.1159 9 6 7.7686 3.4813 -0.2184 10 1 8.2849 2.5701 -0.4819 11 6 8.4908 4.6471 0.0168 12 7 7.9163 5.6663 0.6131 13 14 10.2776 4.7623 -0.5155 14 1 11.1540 4.2922 0.5872 15 1 10.4925 3.9133 -1.7147 16 1 10.6068 6.1730 -0.8424 17 6 5.6773 4.7604 -0.1320 18 6 4.5385 4.9093 -1.1429 19 6 5.8548 5.6609 -1.3562 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 2.0469 -0.9354 0.0004 24 1 1.6345 2.0913 -0.0004 25 1 4.1770 0.2206 -0.0006 26 1 3.7739 3.2633 0.0004 27 1 8.4197 6.4792 0.7768 28 1 5.5571 5.2457 0.8365 29 1 4.3314 4.0617 -1.7962 30 1 3.6693 5.4929 -0.8396 31 1 5.8512 6.7386 -1.1931 32 1 6.5138 5.3078 -2.1494 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706798141.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:49 Heat of formation + Delta-G solvation = 32.047446 kcal Electronic energy + Delta-G solvation = -14668.311797 eV Core-core repulsion = 12210.066707 eV Total energy + Delta-G solvation = -2458.245090 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.99130 -36.23139 -35.27225 -33.22655 -31.59414 -31.12386 -27.32358 -25.04681 -22.42687 -21.49606 -20.96386 -19.27084 -18.09393 -17.00984 -16.02317 -15.15413 -14.48268 -14.41623 -13.91315 -13.43727 -13.30458 -13.11810 -12.82108 -12.22216 -11.64451 -11.53513 -11.26486 -11.13070 -10.81568 -10.77770 -10.47902 -10.38819 -10.19283 -9.88661 -9.38917 -8.89085 -8.33993 -7.86426 -7.71381 -6.39183 -3.81524 1.34704 3.06997 3.21583 3.23916 3.28786 4.08666 4.49339 4.67214 4.80552 5.09177 5.21588 5.26055 5.47310 5.62160 5.72198 5.79444 5.85005 5.93127 6.03102 6.09475 6.24568 6.38838 6.62680 6.69587 6.82435 6.90192 7.08245 7.22345 7.24803 7.49702 8.08733 8.47877 9.17444 9.39281 10.02377 10.63653 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047250 B = 0.006749 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.446788 B = 4147.537838 C = 4586.091981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.166 4.166 3 C -0.120 4.120 4 C -0.100 4.100 5 C -0.162 4.162 6 C 0.460 3.540 7 O -0.603 6.603 8 N -0.406 5.406 9 C -0.301 4.301 10 H 0.104 0.896 11 C 0.036 3.964 12 N -0.860 5.860 13 Si 0.923 3.077 14 H -0.276 1.276 15 H -0.269 1.269 16 H -0.282 1.282 17 C 0.132 3.868 18 C -0.224 4.224 19 C -0.149 4.149 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.122 0.878 26 H 0.123 0.877 27 H 0.269 0.731 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.207 -0.702 -2.190 10.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.185 4.185 3 C -0.139 4.139 4 C -0.122 4.122 5 C -0.182 4.182 6 C 0.254 3.746 7 O -0.491 6.491 8 N -0.121 5.121 9 C -0.429 4.429 10 H 0.121 0.879 11 C -0.169 4.169 12 N -0.497 5.497 13 Si 0.750 3.250 14 H -0.202 1.202 15 H -0.194 1.194 16 H -0.207 1.207 17 C 0.027 3.973 18 C -0.262 4.262 19 C -0.186 4.186 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.139 0.861 26 H 0.141 0.859 27 H 0.080 0.920 28 H 0.132 0.868 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.790 -0.943 -2.077 10.052 hybrid contribution 0.923 0.449 -0.199 1.046 sum -8.867 -0.495 -2.275 9.167 Atomic orbital electron populations 1.20804 0.93277 1.01986 1.01737 1.23474 0.95716 0.97934 1.01365 1.21837 0.93528 0.97874 1.00615 1.22270 0.92302 0.98679 0.98964 1.22601 0.95587 0.98622 1.01428 1.16782 0.87635 0.84312 0.85870 1.90642 1.70554 1.30886 1.57021 1.43214 1.06202 1.03214 1.59518 1.19726 0.80816 0.97980 1.44393 0.87871 1.25308 1.00157 0.95602 0.95870 1.69898 1.37662 1.05002 1.37129 0.85970 0.82136 0.77495 0.79430 1.20208 1.19351 1.20698 1.21190 0.94001 0.87571 0.94534 1.23647 0.93280 1.03726 1.05546 1.22802 0.97076 0.97542 1.01212 0.91831 0.91842 0.92294 0.87229 0.87183 0.86064 0.85922 0.92025 0.86815 0.89276 0.89187 0.89555 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 10.19 36.00 0.37 -0.81 16 2 C -0.17 -2.10 9.99 -35.97 -0.36 -2.46 16 3 C -0.12 -1.76 9.48 -38.02 -0.36 -2.12 16 4 C -0.10 -1.86 9.33 -37.39 -0.35 -2.21 16 5 C -0.16 -3.35 7.78 -39.26 -0.31 -3.65 16 6 C 0.46 11.92 7.33 -14.91 -0.11 11.81 16 7 O -0.60 -17.68 15.80 5.11 0.08 -17.60 16 8 N -0.41 -10.61 2.93 -110.90 -0.32 -10.93 16 9 C -0.30 -8.43 9.20 -15.05 -0.14 -8.56 16 10 H 0.10 3.04 7.37 -52.49 -0.39 2.66 16 11 C 0.04 0.94 4.88 -17.44 -0.09 0.86 16 12 N -0.86 -22.12 10.35 55.51 0.57 -21.55 16 13 Si 0.92 20.45 29.58 -169.99 -5.03 15.42 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 17 C 0.13 2.97 3.56 -67.93 -0.24 2.73 16 18 C -0.22 -4.04 7.86 -26.69 -0.21 -4.25 16 19 C -0.15 -3.01 8.89 -26.69 -0.24 -3.25 16 20 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.11 1.36 8.05 -52.49 -0.42 0.94 16 24 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 25 H 0.12 2.41 7.47 -52.49 -0.39 2.02 16 26 H 0.12 2.25 5.22 -52.49 -0.27 1.98 16 27 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 28 H 0.11 2.66 7.74 -51.93 -0.40 2.25 16 29 H 0.09 1.63 7.20 -51.93 -0.37 1.26 16 30 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 LS Contribution 276.73 15.07 4.17 4.17 Total: -1.00 -30.16 276.73 -6.90 -37.06 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.34 Total: 5.36 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -2.03 Total: -11.93 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.25 Total: -32.48 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.08 Total: -17.60 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.16 -6.90 -37.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706798141.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.104 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds