Wall clock time and date at job start Sun Mar 29 2020 21:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33475 * 120.00203 * 2 1 4 4 C 1.46265 * 119.99976 * 180.02562 * 3 2 1 5 5 C 1.35354 * 119.99922 * 180.02562 * 4 3 2 6 6 C 1.41778 * 120.00007 * 179.97438 * 5 4 3 7 7 O 1.21788 * 119.99706 * 354.28061 * 6 5 4 8 8 N 1.34772 * 120.00109 * 174.27644 * 6 5 4 9 9 C 1.36691 * 119.99957 * 184.97806 * 8 6 5 10 10 H 1.08000 * 120.00014 * 17.05857 * 9 8 6 11 11 C 1.39136 * 120.00105 * 197.05587 * 9 8 6 12 12 N 1.31318 * 119.99747 * 14.88578 * 11 9 8 13 13 Si 1.86802 * 120.00303 * 194.88723 * 11 9 8 14 14 H 1.48496 * 109.47147 * 270.00219 * 13 11 9 15 15 H 1.48497 * 109.46867 * 29.99809 * 13 11 9 16 16 H 1.48499 * 109.47296 * 149.99693 * 13 11 9 17 17 C 1.46493 * 120.00119 * 4.98132 * 8 6 5 18 18 C 1.53003 * 117.49906 * 307.00830 * 17 8 6 19 19 C 1.53003 * 117.50115 * 238.34961 * 17 8 6 20 20 H 1.09000 * 109.46875 * 300.00252 * 1 2 3 21 21 H 1.09002 * 109.47246 * 59.99607 * 1 2 3 22 22 H 1.09000 * 109.47604 * 180.02562 * 1 2 3 23 23 H 1.08002 * 119.99444 * 179.97438 * 2 1 3 24 24 H 1.08002 * 120.00353 * 359.97438 * 3 2 1 25 25 H 1.07997 * 120.00137 * 359.97438 * 4 3 2 26 26 H 1.07997 * 119.99941 * 359.97438 * 5 4 3 27 27 H 0.97008 * 119.99994 * 180.02562 * 12 11 9 28 28 H 1.08997 * 115.55734 * 92.67472 * 17 8 6 29 29 H 1.08999 * 117.49862 * 359.97438 * 18 17 8 30 30 H 1.08998 * 117.50421 * 145.01995 * 18 17 8 31 31 H 1.09002 * 117.50289 * 214.98476 * 19 17 8 32 32 H 1.09000 * 117.49717 * 359.97072 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1744 1.1559 0.0000 4 6 3.6371 1.1558 -0.0006 5 6 4.3139 2.3280 0.0000 6 6 5.7316 2.3280 0.0000 7 8 6.3405 1.2784 0.1046 8 7 6.4055 3.4894 -0.1159 9 6 7.7686 3.4813 -0.2184 10 1 8.2849 2.5701 -0.4819 11 6 8.4908 4.6471 0.0168 12 7 7.9163 5.6663 0.6131 13 14 10.2776 4.7623 -0.5155 14 1 11.1540 4.2922 0.5872 15 1 10.4925 3.9133 -1.7147 16 1 10.6068 6.1730 -0.8424 17 6 5.6773 4.7604 -0.1320 18 6 4.5385 4.9093 -1.1429 19 6 5.8548 5.6609 -1.3562 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 2.0469 -0.9354 0.0004 24 1 1.6345 2.0913 -0.0004 25 1 4.1770 0.2206 -0.0006 26 1 3.7739 3.2633 0.0004 27 1 8.4197 6.4792 0.7768 28 1 5.5571 5.2457 0.8365 29 1 4.3314 4.0617 -1.7962 30 1 3.6693 5.4929 -0.8396 31 1 5.8512 6.7386 -1.1931 32 1 6.5138 5.3078 -2.1494 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706798141.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:49 Heat of formation + Delta-G solvation = 14.214960 kcal Electronic energy + Delta-G solvation = -14669.085071 eV Core-core repulsion = 12210.066707 eV Total energy + Delta-G solvation = -2459.018364 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.83875 -38.00684 -36.57841 -35.05109 -33.16157 -32.91582 -28.66508 -26.79020 -24.02015 -23.15761 -22.53500 -20.47144 -19.81762 -18.90293 -17.75991 -17.02295 -16.17520 -16.03504 -15.50851 -15.07026 -14.75158 -14.36392 -14.04466 -13.86974 -13.24367 -13.01242 -12.85556 -12.50835 -12.45032 -12.26578 -12.14470 -12.05112 -11.70267 -11.55613 -11.08066 -10.69156 -10.31936 -9.78734 -9.11094 -8.34633 -5.89813 -0.04580 1.36560 1.38954 1.50949 1.79578 2.25727 2.64631 2.98685 3.13685 3.24943 3.89810 4.13536 4.20086 4.29808 4.40262 4.43783 4.64601 4.69753 4.81706 4.87318 4.91429 5.09914 5.14202 5.35295 5.37826 5.39807 5.46432 5.60998 5.73786 5.93633 6.10325 6.52584 7.16862 7.45887 8.06625 8.65871 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047250 B = 0.006749 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.446788 B = 4147.537838 C = 4586.091981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.125 4.125 3 C -0.154 4.154 4 C -0.060 4.060 5 C -0.200 4.200 6 C 0.449 3.551 7 O -0.658 6.658 8 N -0.419 5.419 9 C -0.350 4.350 10 H 0.068 0.932 11 C 0.012 3.988 12 N -0.868 5.868 13 Si 0.982 3.018 14 H -0.276 1.276 15 H -0.275 1.275 16 H -0.262 1.262 17 C 0.101 3.899 18 C -0.179 4.179 19 C -0.150 4.150 20 H 0.077 0.923 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.110 0.890 24 H 0.134 0.866 25 H 0.099 0.901 26 H 0.149 0.851 27 H 0.276 0.724 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.986 -0.104 -2.578 13.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.144 4.144 3 C -0.172 4.172 4 C -0.082 4.082 5 C -0.220 4.220 6 C 0.244 3.756 7 O -0.550 6.550 8 N -0.133 5.133 9 C -0.478 4.478 10 H 0.086 0.914 11 C -0.193 4.193 12 N -0.504 5.504 13 Si 0.806 3.194 14 H -0.202 1.202 15 H -0.200 1.200 16 H -0.186 1.186 17 C -0.003 4.003 18 C -0.216 4.216 19 C -0.188 4.188 20 H 0.096 0.904 21 H 0.097 0.903 22 H 0.094 0.906 23 H 0.128 0.872 24 H 0.152 0.848 25 H 0.117 0.883 26 H 0.166 0.834 27 H 0.086 0.914 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.151 0.849 31 H 0.119 0.881 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.602 -0.306 -2.462 12.844 hybrid contribution 1.568 0.024 -0.039 1.569 sum -11.034 -0.283 -2.501 11.317 Atomic orbital electron populations 1.20925 0.90416 1.03656 1.03047 1.23946 0.97826 0.97240 0.95379 1.21799 0.90930 0.99877 1.04576 1.22502 0.94687 0.97005 0.93965 1.22341 0.92623 1.00523 1.06538 1.17678 0.89772 0.83618 0.84531 1.90574 1.72207 1.32724 1.59524 1.43342 1.05874 1.04596 1.59538 1.19578 0.82470 0.97802 1.47930 0.91363 1.25941 1.03524 0.94738 0.95077 1.69965 1.38845 1.05116 1.36484 0.85115 0.77531 0.78178 0.78607 1.20173 1.19952 1.18591 1.21178 0.97282 0.86839 0.95003 1.23689 0.93090 1.02855 1.02003 1.22764 0.98580 0.98075 0.99332 0.90423 0.90315 0.90620 0.87222 0.84797 0.88268 0.83360 0.91398 0.88227 0.89285 0.84926 0.88075 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 10.19 71.24 0.73 -1.06 16 2 C -0.13 -2.69 9.99 24.61 0.25 -2.44 16 3 C -0.15 -4.03 9.48 23.28 0.22 -3.81 16 4 C -0.06 -2.19 9.33 23.69 0.22 -1.97 16 5 C -0.20 -8.34 7.78 22.48 0.17 -8.17 16 6 C 0.45 24.42 7.33 85.12 0.62 25.04 16 7 O -0.66 -41.22 15.80 -4.63 -0.07 -41.29 16 8 N -0.42 -22.94 2.93 -622.96 -1.82 -24.76 16 9 C -0.35 -20.74 9.20 84.15 0.77 -19.97 16 10 H 0.07 4.38 7.37 -2.91 -0.02 4.36 16 11 C 0.01 0.65 4.88 84.99 0.41 1.06 16 12 N -0.87 -45.22 10.35 21.70 0.22 -45.00 16 13 Si 0.98 42.88 29.58 68.60 2.03 44.91 16 14 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 15 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 16 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 17 C 0.10 4.60 3.56 44.99 0.16 4.76 16 18 C -0.18 -6.10 7.86 30.62 0.24 -5.86 16 19 C -0.15 -6.01 8.89 30.62 0.27 -5.73 16 20 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 21 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 22 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.11 2.37 8.05 -2.91 -0.02 2.35 16 24 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 25 H 0.10 4.03 7.47 -2.91 -0.02 4.01 16 26 H 0.15 5.25 5.22 -2.91 -0.02 5.24 16 27 H 0.28 13.35 8.31 -92.70 -0.77 12.58 16 28 H 0.10 4.72 7.74 -2.39 -0.02 4.71 16 29 H 0.09 3.09 7.20 -2.39 -0.02 3.08 16 30 H 0.13 3.42 8.14 -2.39 -0.02 3.40 16 31 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 32 H 0.07 2.89 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -70.31 276.73 5.52 -64.78 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 1.09 Total: 19.49 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 4.07 Total: -18.13 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -1.60 Total: -69.76 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -0.07 Total: -41.29 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -70.31 5.52 -64.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706798141.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.998 kcal (2) G-P(sol) polarization free energy of solvation -70.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds