Wall clock time and date at job start Sun Mar 29 2020 22:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99913 * 2 1 4 4 H 1.48499 * 109.47222 * 270.00348 * 3 2 1 5 5 H 1.48503 * 109.47047 * 30.00139 * 3 2 1 6 6 H 1.48497 * 109.47109 * 150.00312 * 3 2 1 7 7 C 1.37874 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00429 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99503 * 179.97438 * 7 2 1 10 10 N 1.46910 * 109.47104 * 179.97438 * 9 7 2 11 11 C 1.46893 * 110.99930 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.46925 * 179.97438 * 11 10 9 13 13 C 1.34564 * 126.58406 * 95.02496 * 12 11 10 14 14 N 1.34005 * 108.03308 * 179.77327 * 13 12 11 15 15 C 1.30912 * 109.30162 * 0.09870 * 14 13 12 16 16 N 1.34814 * 108.60788 * 359.80826 * 15 14 13 17 17 C 1.47010 * 111.17740 * 180.29258 * 16 15 14 18 18 C 1.54389 * 105.52637 * 342.86364 * 17 16 15 19 19 C 1.51562 * 141.44570 * 179.77947 * 15 14 13 20 20 H 0.97002 * 119.99946 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47671 * 59.99946 * 9 7 2 22 22 H 1.08997 * 109.47628 * 299.99703 * 9 7 2 23 23 H 1.00897 * 110.99756 * 56.04461 * 10 9 7 24 24 H 1.09003 * 109.47120 * 60.00466 * 11 10 9 25 25 H 1.09000 * 109.47526 * 299.99975 * 11 10 9 26 26 H 1.08001 * 125.98226 * 359.79776 * 13 12 11 27 27 H 1.08997 * 110.23147 * 223.85015 * 17 16 15 28 28 H 1.08998 * 110.23536 * 101.87987 * 17 16 15 29 29 H 1.09000 * 110.96733 * 267.60540 * 18 17 16 30 30 H 1.09006 * 110.99713 * 143.86294 * 18 17 16 31 31 H 1.09002 * 110.47688 * 315.24669 * 19 15 14 32 32 H 1.09002 * 110.47368 * 77.72549 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0013 -2.5790 -0.0010 11 6 5.4697 -2.6182 -0.0022 12 6 5.9340 -4.0519 -0.0014 13 6 6.2702 -4.7866 -1.0774 14 7 6.6312 -6.0048 -0.6516 15 6 6.5294 -6.0551 0.6526 16 7 6.1006 -4.8568 1.0971 17 6 5.9727 -4.8483 2.5616 18 6 5.9584 -6.3333 2.9838 19 6 6.7292 -6.9989 1.8215 20 1 -0.4850 0.8401 0.0004 21 1 3.8753 -0.6804 0.8888 22 1 3.8746 -0.6800 -0.8911 23 1 3.6255 -3.0955 -0.7821 24 1 5.8473 -2.1139 0.8874 25 1 5.8459 -2.1145 -0.8926 26 1 6.2526 -4.4527 -2.1044 27 1 5.0417 -4.3637 2.8559 28 1 6.8235 -4.3366 3.0114 29 1 4.9381 -6.7123 3.0428 30 1 6.4805 -6.4754 3.9301 31 1 6.3084 -7.9789 1.5966 32 1 7.7882 -7.0864 2.0643 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719145888.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:20 Heat of formation + Delta-G solvation = 69.099723 kcal Electronic energy + Delta-G solvation = -14534.972373 eV Core-core repulsion = 12110.626742 eV Total energy + Delta-G solvation = -2424.345631 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.26943 -36.48787 -35.47927 -32.64176 -31.59751 -29.40564 -27.82880 -26.60935 -23.88217 -22.16519 -21.18295 -20.33139 -19.51319 -16.96345 -16.68919 -15.71744 -14.79405 -14.53843 -14.19808 -14.09235 -13.71452 -13.42222 -13.35010 -12.80385 -12.45408 -12.23294 -11.83154 -11.70311 -11.57981 -11.23925 -10.78940 -10.55343 -9.89585 -9.66302 -9.37228 -9.33456 -8.64849 -8.06310 -7.57204 -6.10188 -4.08869 2.19192 2.90119 3.24889 3.28572 3.32575 3.34124 3.88825 4.34788 4.37514 4.58701 4.66087 4.99320 5.17396 5.22489 5.27413 5.38324 5.45176 5.52751 5.60344 5.72002 5.77000 5.89710 5.97885 6.61175 6.72006 6.92967 7.02885 7.22213 7.52640 7.80081 8.22174 8.29986 8.58821 8.97617 9.50988 11.03073 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045116 B = 0.005858 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.478140 B = 4778.955480 C = 4974.799053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.517 4.517 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.678 5.678 11 C 0.126 3.874 12 C 0.019 3.981 13 C -0.026 4.026 14 N -0.483 5.483 15 C 0.171 3.829 16 N -0.463 5.463 17 C 0.101 3.899 18 C -0.129 4.129 19 C -0.037 4.037 20 H 0.264 0.736 21 H 0.026 0.974 22 H -0.018 1.018 23 H 0.340 0.660 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.171 0.829 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.336 -9.816 5.646 18.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.556 4.556 8 H 0.097 0.903 9 C 0.037 3.963 10 N -0.309 5.309 11 C -0.004 4.004 12 C -0.096 4.096 13 C -0.174 4.174 14 N -0.202 5.202 15 C -0.092 4.092 16 N -0.147 5.147 17 C -0.021 4.021 18 C -0.167 4.167 19 C -0.076 4.076 20 H 0.074 0.926 21 H 0.044 0.956 22 H 0.000 1.000 23 H 0.158 0.842 24 H 0.088 0.912 25 H 0.065 0.935 26 H 0.189 0.811 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.300 -10.186 5.972 18.545 hybrid contribution 0.214 2.018 -0.485 2.087 sum 14.514 -8.168 5.488 17.535 Atomic orbital electron populations 1.69903 1.06172 1.26949 1.50767 1.24907 0.94762 0.98959 0.94656 0.86807 0.80233 0.83793 0.78542 1.20216 1.21100 1.19254 1.21029 0.88810 0.94862 1.50868 0.90319 1.20029 0.96796 0.84637 0.94860 1.60564 1.03336 1.16913 1.50081 1.20301 0.91146 0.88003 1.00990 1.21046 1.08048 0.95527 0.84990 1.22033 1.07291 0.89794 0.98313 1.69804 1.21700 1.21459 1.07254 1.24191 1.04603 0.88394 0.91966 1.46178 1.48920 1.12510 1.07082 1.22358 1.04230 0.98775 0.76742 1.22728 1.02474 0.92911 0.98598 1.20580 1.01740 0.97146 0.88137 0.92577 0.95639 0.99992 0.84209 0.91236 0.93516 0.81145 0.88390 0.89702 0.89334 0.88332 0.88776 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.85 9.87 -34.44 -0.34 -15.19 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 9 C 0.16 3.98 4.51 -4.97 -0.02 3.95 16 10 N -0.68 -14.23 6.48 -116.34 -0.75 -14.99 16 11 C 0.13 2.19 6.24 -4.98 -0.03 2.15 16 12 C 0.02 0.31 6.76 -81.49 -0.55 -0.24 16 13 C -0.03 -0.43 11.78 -17.90 -0.21 -0.64 16 14 N -0.48 -8.36 11.26 -10.56 -0.12 -8.48 16 15 C 0.17 2.54 8.58 -154.86 -1.33 1.21 16 16 N -0.46 -6.95 3.61 -107.74 -0.39 -7.34 16 17 C 0.10 1.10 7.78 -3.04 -0.02 1.08 16 18 C -0.13 -1.00 7.17 -25.20 -0.18 -1.18 16 19 C -0.04 -0.35 6.86 -26.66 -0.18 -0.53 16 20 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 21 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 22 H -0.02 -0.42 7.57 -51.93 -0.39 -0.81 16 23 H 0.34 7.15 8.71 -39.29 -0.34 6.81 16 24 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.17 2.47 8.06 -52.49 -0.42 2.05 16 27 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 271.58 15.07 4.09 4.09 Total: -1.00 -33.64 271.58 -8.54 -42.18 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -4.50 Total: 2.10 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -2.97 Total: -7.47 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.49 Total: -57.68 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -33.64 -8.54 -42.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719145888.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.276 kcal (2) G-P(sol) polarization free energy of solvation -33.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds