Wall clock time and date at job start Sun Mar 29 2020 22:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99913 * 2 1 4 4 H 1.48499 * 109.47222 * 270.00348 * 3 2 1 5 5 H 1.48503 * 109.47047 * 30.00139 * 3 2 1 6 6 H 1.48497 * 109.47109 * 150.00312 * 3 2 1 7 7 C 1.37874 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00429 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99503 * 179.97438 * 7 2 1 10 10 N 1.46910 * 109.47104 * 179.97438 * 9 7 2 11 11 C 1.46893 * 110.99930 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.46925 * 179.97438 * 11 10 9 13 13 C 1.34564 * 126.58406 * 95.02496 * 12 11 10 14 14 N 1.34005 * 108.03308 * 179.77327 * 13 12 11 15 15 C 1.30912 * 109.30162 * 0.09870 * 14 13 12 16 16 N 1.34814 * 108.60788 * 359.80826 * 15 14 13 17 17 C 1.47010 * 111.17740 * 180.29258 * 16 15 14 18 18 C 1.54389 * 105.52637 * 342.86364 * 17 16 15 19 19 C 1.51562 * 141.44570 * 179.77947 * 15 14 13 20 20 H 0.97002 * 119.99946 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47671 * 59.99946 * 9 7 2 22 22 H 1.08997 * 109.47628 * 299.99703 * 9 7 2 23 23 H 1.00897 * 110.99756 * 56.04461 * 10 9 7 24 24 H 1.09003 * 109.47120 * 60.00466 * 11 10 9 25 25 H 1.09000 * 109.47526 * 299.99975 * 11 10 9 26 26 H 1.08001 * 125.98226 * 359.79776 * 13 12 11 27 27 H 1.08997 * 110.23147 * 223.85015 * 17 16 15 28 28 H 1.08998 * 110.23536 * 101.87987 * 17 16 15 29 29 H 1.09000 * 110.96733 * 267.60540 * 18 17 16 30 30 H 1.09006 * 110.99713 * 143.86294 * 18 17 16 31 31 H 1.09002 * 110.47688 * 315.24669 * 19 15 14 32 32 H 1.09002 * 110.47368 * 77.72549 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0013 -2.5790 -0.0010 11 6 5.4697 -2.6182 -0.0022 12 6 5.9340 -4.0519 -0.0014 13 6 6.2702 -4.7866 -1.0774 14 7 6.6312 -6.0048 -0.6516 15 6 6.5294 -6.0551 0.6526 16 7 6.1006 -4.8568 1.0971 17 6 5.9727 -4.8483 2.5616 18 6 5.9584 -6.3333 2.9838 19 6 6.7292 -6.9989 1.8215 20 1 -0.4850 0.8401 0.0004 21 1 3.8753 -0.6804 0.8888 22 1 3.8746 -0.6800 -0.8911 23 1 3.6255 -3.0955 -0.7821 24 1 5.8473 -2.1139 0.8874 25 1 5.8459 -2.1145 -0.8926 26 1 6.2526 -4.4527 -2.1044 27 1 5.0417 -4.3637 2.8559 28 1 6.8235 -4.3366 3.0114 29 1 4.9381 -6.7123 3.0428 30 1 6.4805 -6.4754 3.9301 31 1 6.3084 -7.9789 1.5966 32 1 7.7882 -7.0864 2.0643 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719145888.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:20 Heat of formation + Delta-G solvation = 45.031548 kcal Electronic energy + Delta-G solvation = -14536.016047 eV Core-core repulsion = 12110.626742 eV Total energy + Delta-G solvation = -2425.389306 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.38215 -37.62586 -36.94803 -34.68538 -32.85743 -30.83201 -29.01030 -28.02969 -25.37814 -23.13849 -23.02769 -21.39462 -20.67270 -19.02317 -17.69783 -17.09191 -16.42357 -16.02753 -15.65567 -15.28605 -15.01383 -14.72071 -14.41751 -14.15212 -14.09766 -13.48872 -13.22563 -13.01398 -12.65638 -12.43808 -12.42551 -11.92303 -11.83237 -11.55448 -10.90916 -10.84311 -10.47989 -9.38740 -9.13045 -8.33010 -6.38785 1.01205 1.34277 1.36023 1.47227 1.89061 2.08669 2.32012 2.99219 3.00975 3.47130 3.59569 3.76196 3.94492 4.03570 4.23254 4.42126 4.53783 4.59734 4.61283 4.68479 4.76765 4.90528 5.00757 5.01132 5.15499 5.42972 5.49753 5.83749 5.88484 6.15084 6.44948 6.54423 6.69307 7.12150 7.26238 8.83936 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045116 B = 0.005858 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.478140 B = 4778.955480 C = 4974.799053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.248 1.248 7 C -0.532 4.532 8 H 0.033 0.967 9 C 0.176 3.824 10 N -0.686 5.686 11 C 0.135 3.865 12 C -0.004 4.004 13 C -0.036 4.036 14 N -0.523 5.523 15 C 0.170 3.830 16 N -0.472 5.472 17 C 0.088 3.912 18 C -0.114 4.114 19 C -0.036 4.036 20 H 0.269 0.731 21 H 0.029 0.971 22 H -0.008 1.008 23 H 0.336 0.664 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.181 0.819 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.139 0.861 31 H 0.106 0.894 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.547 -9.609 6.910 20.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.171 1.171 7 C -0.570 4.570 8 H 0.051 0.949 9 C 0.048 3.952 10 N -0.317 5.317 11 C 0.005 3.995 12 C -0.120 4.120 13 C -0.185 4.185 14 N -0.242 5.242 15 C -0.094 4.094 16 N -0.155 5.155 17 C -0.032 4.032 18 C -0.151 4.151 19 C -0.074 4.074 20 H 0.078 0.922 21 H 0.047 0.953 22 H 0.010 0.990 23 H 0.154 0.846 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.198 0.802 27 H 0.101 0.899 28 H 0.125 0.875 29 H 0.104 0.896 30 H 0.157 0.843 31 H 0.124 0.876 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 16.527 -9.997 7.255 20.633 hybrid contribution -0.508 1.817 -0.857 2.072 sum 16.020 -8.180 6.398 19.091 Atomic orbital electron populations 1.70061 1.08299 1.28372 1.52064 1.25914 0.95660 1.03442 0.93914 0.85606 0.79333 0.78003 0.79292 1.19018 1.20571 1.17131 1.21296 0.91370 0.93368 1.50953 0.94904 1.19772 0.93702 0.86549 0.95179 1.60455 1.06026 1.15094 1.50165 1.20236 0.88468 0.88982 1.01812 1.20939 1.09521 0.95509 0.85988 1.22330 1.07103 0.89969 0.99067 1.69793 1.23567 1.21874 1.09009 1.25284 1.02437 0.89427 0.92228 1.46529 1.48349 1.12243 1.08379 1.22739 1.04391 1.01393 0.74674 1.22797 1.02812 0.89932 0.99601 1.20891 1.03719 0.96528 0.86311 0.92245 0.95288 0.99027 0.84628 0.90693 0.92172 0.80207 0.89930 0.87539 0.89585 0.84255 0.87570 0.86514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 2 C 0.01 0.49 5.47 84.65 0.46 0.95 16 3 Si 0.95 43.63 27.47 68.60 1.88 45.51 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.25 -10.45 6.54 99.48 0.65 -9.80 16 7 C -0.53 -31.16 9.87 25.60 0.25 -30.90 16 8 H 0.03 2.16 8.06 -2.91 -0.02 2.13 16 9 C 0.18 8.40 4.51 85.55 0.39 8.79 16 10 N -0.69 -28.83 6.48 -521.98 -3.38 -32.21 16 11 C 0.13 4.55 6.24 85.56 0.53 5.08 16 12 C 0.00 -0.15 6.76 40.88 0.28 0.13 16 13 C -0.04 -1.20 11.78 83.52 0.98 -0.22 16 14 N -0.52 -17.89 11.26 -187.33 -2.11 -20.00 16 15 C 0.17 4.80 8.58 138.36 1.19 5.98 16 16 N -0.47 -13.60 3.61 -494.77 -1.79 -15.39 16 17 C 0.09 1.74 7.78 86.75 0.67 2.42 16 18 C -0.11 -1.37 7.17 31.59 0.23 -1.14 16 19 C -0.04 -0.56 6.86 30.64 0.21 -0.35 16 20 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 21 H 0.03 1.37 7.20 -2.39 -0.02 1.35 16 22 H -0.01 -0.36 7.57 -2.39 -0.02 -0.38 16 23 H 0.34 14.45 8.71 -89.70 -0.78 13.67 16 24 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.18 5.26 8.06 -2.91 -0.02 5.24 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.14 0.60 8.14 -2.38 -0.02 0.59 16 31 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -74.50 271.58 0.38 -74.12 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.27 Total: 16.47 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 5.19 Total: -9.27 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -6.98 Total: -126.83 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.51 kcal Total: -74.50 0.38 -74.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719145888.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.151 kcal (2) G-P(sol) polarization free energy of solvation -74.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds