Wall clock time and date at job start Sun Mar 29 2020 21:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46508 * 109.46961 * 137.66730 * 3 2 1 5 5 C 1.37094 * 120.00030 * 95.59032 * 4 3 2 6 6 H 1.07999 * 120.00071 * 218.52405 * 5 4 3 7 7 C 1.38959 * 120.00142 * 38.52270 * 5 4 3 8 8 N 1.31413 * 119.99622 * 213.90036 * 7 5 4 9 9 Si 1.86793 * 119.99778 * 33.90296 * 7 5 4 10 10 H 1.48496 * 109.47400 * 89.80394 * 9 7 5 11 11 H 1.48502 * 109.46862 * 209.80035 * 9 7 5 12 12 H 1.48498 * 109.47266 * 329.80036 * 9 7 5 13 13 C 1.34769 * 119.99577 * 275.58895 * 4 3 2 14 14 O 1.21296 * 120.00500 * 5.08616 * 13 4 3 15 15 C 1.50699 * 120.00093 * 185.08924 * 13 4 3 16 16 C 1.53002 * 112.84953 * 59.40370 * 15 13 4 17 17 C 1.53782 * 113.61330 * 288.21175 * 15 13 4 18 18 C 1.53959 * 87.01730 * 220.04367 * 17 15 13 19 19 C 1.53780 * 113.61748 * 190.60022 * 15 13 4 20 20 H 4.40646 * 5.51425 * 179.97438 * 4 1 2 21 21 H 1.09002 * 109.46872 * 257.66249 * 3 2 1 22 22 H 1.08992 * 109.47349 * 17.66447 * 3 2 1 23 23 H 0.97002 * 119.99347 * 179.97438 * 8 7 5 24 24 H 1.08993 * 109.47421 * 56.45604 * 16 15 13 25 25 H 1.09002 * 109.47413 * 176.45898 * 16 15 13 26 26 H 1.09011 * 109.47025 * 296.45653 * 16 15 13 27 27 H 1.08998 * 113.61473 * 334.56105 * 17 15 13 28 28 H 1.08997 * 113.62120 * 105.46665 * 17 15 13 29 29 H 1.08994 * 113.53875 * 270.80700 * 18 17 15 30 30 H 1.09004 * 113.74006 * 139.94477 * 18 17 15 31 31 H 1.09004 * 113.61356 * 254.52687 * 19 15 13 32 32 H 1.08998 * 113.61554 * 25.43549 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.0220 -0.9302 5 6 3.4709 2.2672 -0.4660 6 1 3.2344 3.1437 -1.0508 7 6 4.1166 2.4014 0.7571 8 7 3.8746 3.4461 1.5167 9 14 5.3287 1.0969 1.3214 10 1 6.6900 1.4450 0.8409 11 1 5.3294 1.0306 2.8049 12 1 4.9303 -0.2219 0.7671 13 6 3.2514 0.7374 -2.2423 14 8 2.8673 -0.3316 -2.6678 15 6 3.8602 1.7471 -3.1808 16 6 5.2938 2.1229 -2.8006 17 6 2.9559 2.9615 -3.4499 18 6 3.4201 2.8810 -4.9156 19 6 3.6909 1.3878 -4.6664 20 1 -1.0501 -0.0004 0.0001 21 1 3.0092 0.2204 1.0040 22 1 3.0098 -0.9783 -0.3118 23 1 4.3251 3.5396 2.3706 24 1 5.9064 1.2224 -2.7585 25 1 5.7009 2.8047 -3.5473 26 1 5.2954 2.6094 -1.8251 27 1 1.8943 2.7536 -3.3161 28 1 3.2783 3.8681 -2.9380 29 1 4.3207 3.4600 -5.1193 30 1 2.6254 3.0660 -5.6384 31 1 4.6060 1.0259 -5.1351 32 1 2.8306 0.7489 -4.8658 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720690012.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:06 Heat of formation + Delta-G solvation = 47.586624 kcal Electronic energy + Delta-G solvation = -15585.363338 eV Core-core repulsion = 13127.792078 eV Total energy + Delta-G solvation = -2457.571260 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.82422 -37.16972 -35.04632 -32.64534 -31.63059 -29.06153 -26.73498 -25.09524 -25.02386 -23.41772 -19.83267 -18.38429 -17.89993 -16.72030 -15.88598 -15.29241 -14.70629 -14.30621 -14.14133 -13.26626 -13.04369 -12.74211 -12.44544 -12.19004 -11.78719 -11.65802 -11.52400 -10.99391 -10.86066 -10.59558 -10.44236 -10.19580 -9.88064 -9.79826 -9.53533 -9.36233 -9.12881 -8.38776 -7.87437 -6.61242 -4.05901 3.04521 3.19356 3.25224 3.36214 3.60280 3.70998 4.10614 4.60165 4.80787 5.14211 5.16097 5.25405 5.38574 5.44306 5.96917 6.05970 6.09625 6.18547 6.29577 6.33028 6.36108 6.44659 6.56052 6.61422 6.64111 6.78200 6.91800 7.16069 7.27029 8.02110 8.26151 8.34719 8.93235 9.33419 9.68828 10.48868 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023093 B = 0.013880 C = 0.010873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.200400 B = 2016.826776 C = 2574.614773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.159 4.159 3 C 0.213 3.787 4 N -0.455 5.455 5 C -0.352 4.352 6 H 0.108 0.892 7 C 0.077 3.923 8 N -0.835 5.835 9 Si 0.843 3.157 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.257 1.257 13 C 0.494 3.506 14 O -0.594 6.594 15 C -0.076 4.076 16 C -0.126 4.126 17 C -0.114 4.114 18 C -0.144 4.144 19 C -0.117 4.117 20 H 0.210 0.790 21 H 0.090 0.910 22 H 0.085 0.915 23 H 0.275 0.725 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.802 -1.023 -5.110 5.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.161 4.161 3 C 0.090 3.910 4 N -0.174 5.174 5 C -0.478 4.478 6 H 0.126 0.874 7 C -0.133 4.133 8 N -0.467 5.467 9 Si 0.667 3.333 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.181 1.181 13 C 0.284 3.716 14 O -0.479 6.479 15 C -0.079 4.079 16 C -0.184 4.184 17 C -0.152 4.152 18 C -0.181 4.181 19 C -0.155 4.155 20 H 0.227 0.773 21 H 0.108 0.892 22 H 0.103 0.897 23 H 0.086 0.914 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.666 -1.412 -5.104 5.338 hybrid contribution 0.448 -0.451 0.643 0.904 sum 1.114 -1.862 -4.462 4.961 Atomic orbital electron populations 1.24621 0.95626 1.02660 1.02599 1.23899 0.95065 0.98484 0.98615 1.18727 0.83364 0.93812 0.95081 1.43625 1.56244 1.12391 1.05154 1.19024 1.39818 0.83239 1.05725 0.87428 1.25337 0.96577 0.96208 0.95177 1.69979 1.36629 1.30651 1.09477 0.87450 0.83712 0.83925 0.78175 1.19711 1.20732 1.18064 1.20366 0.80678 0.87218 0.83324 1.90530 1.53884 1.26194 1.77283 1.21617 0.97112 0.95607 0.93530 1.21593 0.92312 1.00841 1.03607 1.22840 0.99164 0.97995 0.95174 1.22887 1.00866 0.97176 0.97206 1.22850 1.01964 0.95947 0.94756 0.77310 0.89221 0.89705 0.91429 0.93444 0.93143 0.88886 0.90652 0.90567 0.90454 0.92032 0.91926 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.68 19.25 29.55 0.57 -4.12 16 2 C -0.16 -3.60 13.60 -37.12 -0.50 -4.10 16 3 C 0.21 4.93 4.02 -6.82 -0.03 4.90 16 4 N -0.45 -11.00 2.10 -117.93 -0.25 -11.25 16 5 C -0.35 -8.79 6.66 -14.93 -0.10 -8.89 16 6 H 0.11 2.78 5.78 -52.49 -0.30 2.48 16 7 C 0.08 1.93 4.98 -17.46 -0.09 1.84 16 8 N -0.83 -22.04 13.96 55.50 0.77 -21.27 16 9 Si 0.84 18.92 26.49 -169.99 -4.50 14.42 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.26 -5.66 5.86 56.52 0.33 -5.33 16 13 C 0.49 11.70 6.63 -10.99 -0.07 11.63 16 14 O -0.59 -15.34 15.74 5.54 0.09 -15.25 16 15 C -0.08 -1.50 0.73 -154.85 -0.11 -1.61 16 16 C -0.13 -2.33 8.76 37.16 0.33 -2.01 16 17 C -0.11 -2.07 5.88 -25.82 -0.15 -2.22 16 18 C -0.14 -2.16 7.74 -25.82 -0.20 -2.36 16 19 C -0.12 -2.03 6.93 -25.92 -0.18 -2.21 16 20 H 0.21 3.15 7.80 -54.08 -0.42 2.73 16 21 H 0.09 2.04 4.79 -51.93 -0.25 1.79 16 22 H 0.08 1.91 7.67 -51.93 -0.40 1.52 16 23 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.78 7.31 -51.93 -0.38 0.41 16 26 H 0.09 1.90 6.02 -51.92 -0.31 1.59 16 27 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 28 H 0.08 1.38 7.34 -51.93 -0.38 1.00 16 29 H 0.08 1.04 7.60 -51.93 -0.39 0.65 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 32 H 0.08 1.58 7.60 -51.93 -0.39 1.18 16 LS Contribution 266.24 15.07 4.01 4.01 Total: -1.00 -28.56 266.24 -4.54 -33.10 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -4.13 Total: 5.37 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -0.54 Total: -9.14 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.53 Total: -32.51 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.09 Total: -15.25 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.50 Total: 14.42 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.56 -4.54 -33.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720690012.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.687 kcal (2) G-P(sol) polarization free energy of solvation -28.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds