Wall clock time and date at job start Sun Mar 29 2020 22:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 120.00228 * 2 1 4 4 H 1.48504 * 109.46910 * 272.91023 * 3 2 1 5 5 H 1.48497 * 109.46993 * 32.91016 * 3 2 1 6 6 H 1.48495 * 109.47108 * 152.90866 * 3 2 1 7 7 C 1.38819 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99928 * 339.35970 * 7 2 1 9 9 N 1.36931 * 120.00235 * 159.36514 * 7 2 1 10 10 C 1.46932 * 120.63013 * 332.62313 * 9 7 2 11 11 C 1.53187 * 108.77769 * 233.59113 * 10 9 7 12 12 C 1.53040 * 109.31034 * 305.36174 * 11 10 9 13 13 N 1.46505 * 109.46152 * 181.38349 * 12 11 10 14 14 C 1.34945 * 126.03875 * 275.00597 * 13 12 11 15 15 C 1.35315 * 107.74425 * 179.76750 * 14 13 12 16 16 C 1.39874 * 107.92268 * 0.22594 * 15 14 13 17 17 N 1.30838 * 108.19928 * 359.97438 * 16 15 14 18 18 C 1.53041 * 109.53750 * 61.37030 * 12 11 10 19 19 C 1.46930 * 120.63406 * 152.60655 * 9 7 2 20 20 H 0.96995 * 120.00095 * 0.02562 * 1 2 3 21 21 H 1.09008 * 109.58382 * 113.79981 * 10 9 7 22 22 H 1.08999 * 109.58447 * 353.38136 * 10 9 7 23 23 H 1.09000 * 109.49660 * 185.41517 * 11 10 9 24 24 H 1.08994 * 109.49940 * 65.31496 * 11 10 9 25 25 H 1.09001 * 109.46785 * 301.35927 * 12 11 10 26 26 H 1.07998 * 126.12974 * 0.03394 * 14 13 12 27 27 H 1.08001 * 126.03804 * 180.20453 * 15 14 13 28 28 H 1.07993 * 125.89799 * 180.02562 * 16 15 14 29 29 H 1.08997 * 109.50277 * 58.58248 * 18 12 11 30 30 H 1.09001 * 109.50077 * 178.68031 * 18 12 11 31 31 H 1.09005 * 109.58181 * 246.19815 * 19 9 7 32 32 H 1.08993 * 109.58296 * 6.62067 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4361 2.0819 -1.3983 5 1 1.4798 2.6341 0.7607 6 1 3.5771 1.4231 0.6376 7 6 2.0102 -1.2022 0.0005 8 1 1.5222 -2.1073 0.3306 9 7 3.3137 -1.2404 -0.4173 10 6 3.8176 -0.2594 -1.3882 11 6 4.4628 -1.0096 -2.5576 12 6 5.5295 -1.9657 -2.0188 13 7 6.1716 -2.6609 -3.1371 14 6 5.7216 -3.7818 -3.7388 15 6 6.5926 -4.0989 -4.7246 16 6 7.6126 -3.1418 -4.7220 17 7 7.3625 -2.2807 -3.7692 18 6 4.8755 -2.9907 -1.0894 19 6 4.2350 -2.2630 0.0968 20 1 -0.4850 0.8400 -0.0004 21 1 4.5599 0.3797 -0.9099 22 1 2.9911 0.3488 -1.7556 23 1 4.9255 -0.2944 -3.2377 24 1 3.7004 -1.5780 -3.0902 25 1 6.2784 -1.3995 -1.4650 26 1 4.8245 -4.3258 -3.4825 27 1 6.5143 -4.9422 -5.3947 28 1 8.4597 -3.1173 -5.3914 29 1 4.1092 -3.5405 -1.6357 30 1 5.6319 -3.6856 -0.7244 31 1 5.0113 -1.7872 0.6961 32 1 3.6838 -2.9767 0.7090 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731355366.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:19 Heat of formation + Delta-G solvation = 102.520187 kcal Electronic energy + Delta-G solvation = -15195.164526 eV Core-core repulsion = 12772.268115 eV Total energy + Delta-G solvation = -2422.896411 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.02960 -37.93266 -33.98087 -31.70244 -30.68038 -29.89794 -29.34412 -25.16938 -23.17596 -22.48942 -21.04446 -20.57266 -19.16553 -17.30811 -16.72152 -15.24591 -14.78654 -14.48174 -14.31078 -13.87445 -13.60979 -13.13985 -12.96199 -12.59074 -12.41061 -12.02711 -11.95080 -11.14645 -10.96569 -10.73775 -10.59761 -10.28766 -10.14547 -9.96694 -9.58271 -9.17838 -8.74077 -8.39287 -7.12442 -6.03239 -3.40873 2.11151 2.71107 2.99474 3.26295 3.43566 3.45255 4.45086 4.68446 4.79809 5.02257 5.07263 5.12950 5.26320 5.38906 5.60483 5.64661 5.81605 5.86700 5.99261 6.03784 6.12756 6.15394 6.22415 6.42655 6.48375 6.50173 6.72552 6.83252 7.25521 7.84673 7.91213 8.23631 8.82631 9.61995 9.97369 11.12332 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051238 B = 0.007626 C = 0.007280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.333660 B = 3670.623758 C = 3845.202505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.026 3.974 3 Si 0.880 3.120 4 H -0.288 1.288 5 H -0.301 1.301 6 H -0.270 1.270 7 C -0.265 4.265 8 H 0.088 0.912 9 N -0.606 5.606 10 C 0.129 3.871 11 C -0.141 4.141 12 C 0.165 3.835 13 N -0.357 5.357 14 C 0.061 3.939 15 C -0.288 4.288 16 C 0.034 3.966 17 N -0.304 5.304 18 C -0.142 4.142 19 C 0.153 3.847 20 H 0.264 0.736 21 H 0.030 0.970 22 H 0.080 0.920 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.170 0.830 27 H 0.142 0.858 28 H 0.177 0.823 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.028 0.972 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.548 -6.171 -6.104 14.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.174 4.174 3 Si 0.711 3.289 4 H -0.215 1.215 5 H -0.229 1.229 6 H -0.195 1.195 7 C -0.393 4.393 8 H 0.105 0.895 9 N -0.329 5.329 10 C 0.002 3.998 11 C -0.182 4.182 12 C 0.064 3.936 13 N -0.138 5.138 14 C -0.087 4.087 15 C -0.317 4.317 16 C -0.151 4.151 17 N -0.126 5.126 18 C -0.183 4.183 19 C 0.026 3.974 20 H 0.074 0.926 21 H 0.048 0.952 22 H 0.098 0.902 23 H 0.081 0.919 24 H 0.090 0.910 25 H 0.114 0.886 26 H 0.187 0.813 27 H 0.160 0.840 28 H 0.194 0.806 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.705 -4.944 -5.351 13.787 hybrid contribution 0.118 0.202 -0.578 0.624 sum 11.823 -4.742 -5.929 14.051 Atomic orbital electron populations 1.69824 1.05737 1.26712 1.52445 1.25280 0.95229 0.97618 0.99226 0.86992 0.80131 0.84694 0.77132 1.21542 1.22912 1.19457 1.18906 0.84795 0.94909 1.40727 0.89483 1.44424 1.08770 1.33310 1.46406 1.21368 0.97485 0.92049 0.88856 1.22494 0.97234 0.98529 0.99903 1.21415 0.94409 0.93837 0.83958 1.49249 1.17622 1.20032 1.26920 1.22536 1.00310 0.90534 0.95304 1.21441 0.99046 1.05654 1.05588 1.23781 0.99963 0.93729 0.97632 1.77317 1.00267 1.23835 1.11173 1.22479 0.99859 0.97574 0.98378 1.20888 0.92585 0.91595 0.92352 0.92625 0.95189 0.90192 0.91912 0.91031 0.88614 0.81265 0.84019 0.80584 0.90870 0.91652 0.95386 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.97 55.49 0.78 -26.40 16 2 C 0.03 0.73 5.23 -17.43 -0.09 0.64 16 3 Si 0.88 21.88 24.35 -169.99 -4.14 17.74 16 4 H -0.29 -6.93 6.62 56.52 0.37 -6.55 16 5 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 6 H -0.27 -6.56 6.64 56.52 0.38 -6.18 16 7 C -0.27 -7.15 10.03 -15.06 -0.15 -7.31 16 8 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 9 N -0.61 -13.73 2.77 -172.31 -0.48 -14.21 16 10 C 0.13 2.73 4.20 -3.71 -0.02 2.71 16 11 C -0.14 -2.54 5.68 -26.61 -0.15 -2.69 16 12 C 0.16 2.67 3.16 -67.89 -0.21 2.46 16 13 N -0.36 -5.66 3.53 -54.82 -0.19 -5.85 16 14 C 0.06 0.84 10.59 -17.22 -0.18 0.66 16 15 C -0.29 -3.66 10.80 -40.01 -0.43 -4.10 16 16 C 0.03 0.46 12.03 -17.36 -0.21 0.25 16 17 N -0.30 -4.99 12.58 30.62 0.39 -4.60 16 18 C -0.14 -2.19 4.97 -26.61 -0.13 -2.32 16 19 C 0.15 2.79 6.52 -3.71 -0.02 2.76 16 20 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 21 H 0.03 0.63 7.08 -51.92 -0.37 0.26 16 22 H 0.08 1.87 4.50 -51.93 -0.23 1.63 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 24 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 25 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 26 H 0.17 1.98 7.30 -52.49 -0.38 1.60 16 27 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 28 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.07 1.13 7.23 -51.93 -0.38 0.75 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 LS Contribution 258.00 15.07 3.89 3.89 Total: -1.00 -30.63 258.00 -5.71 -36.34 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -4.34 Total: 0.02 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -1.60 Total: -6.92 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 0.49 Total: -51.06 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.14 Total: 17.74 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.63 -5.71 -36.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731355366.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.860 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds