Wall clock time and date at job start Sun Mar 29 2020 22:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 120.00228 * 2 1 4 4 H 1.48504 * 109.46910 * 272.91023 * 3 2 1 5 5 H 1.48497 * 109.46993 * 32.91016 * 3 2 1 6 6 H 1.48495 * 109.47108 * 152.90866 * 3 2 1 7 7 C 1.38819 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99928 * 339.35970 * 7 2 1 9 9 N 1.36931 * 120.00235 * 159.36514 * 7 2 1 10 10 C 1.46932 * 120.63013 * 332.62313 * 9 7 2 11 11 C 1.53187 * 108.77769 * 233.59113 * 10 9 7 12 12 C 1.53040 * 109.31034 * 305.36174 * 11 10 9 13 13 N 1.46505 * 109.46152 * 181.38349 * 12 11 10 14 14 C 1.34945 * 126.03875 * 275.00597 * 13 12 11 15 15 C 1.35315 * 107.74425 * 179.76750 * 14 13 12 16 16 C 1.39874 * 107.92268 * 0.22594 * 15 14 13 17 17 N 1.30838 * 108.19928 * 359.97438 * 16 15 14 18 18 C 1.53041 * 109.53750 * 61.37030 * 12 11 10 19 19 C 1.46930 * 120.63406 * 152.60655 * 9 7 2 20 20 H 0.96995 * 120.00095 * 0.02562 * 1 2 3 21 21 H 1.09008 * 109.58382 * 113.79981 * 10 9 7 22 22 H 1.08999 * 109.58447 * 353.38136 * 10 9 7 23 23 H 1.09000 * 109.49660 * 185.41517 * 11 10 9 24 24 H 1.08994 * 109.49940 * 65.31496 * 11 10 9 25 25 H 1.09001 * 109.46785 * 301.35927 * 12 11 10 26 26 H 1.07998 * 126.12974 * 0.03394 * 14 13 12 27 27 H 1.08001 * 126.03804 * 180.20453 * 15 14 13 28 28 H 1.07993 * 125.89799 * 180.02562 * 16 15 14 29 29 H 1.08997 * 109.50277 * 58.58248 * 18 12 11 30 30 H 1.09001 * 109.50077 * 178.68031 * 18 12 11 31 31 H 1.09005 * 109.58181 * 246.19815 * 19 9 7 32 32 H 1.08993 * 109.58296 * 6.62067 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4361 2.0819 -1.3983 5 1 1.4798 2.6341 0.7607 6 1 3.5771 1.4231 0.6376 7 6 2.0102 -1.2022 0.0005 8 1 1.5222 -2.1073 0.3306 9 7 3.3137 -1.2404 -0.4173 10 6 3.8176 -0.2594 -1.3882 11 6 4.4628 -1.0096 -2.5576 12 6 5.5295 -1.9657 -2.0188 13 7 6.1716 -2.6609 -3.1371 14 6 5.7216 -3.7818 -3.7388 15 6 6.5926 -4.0989 -4.7246 16 6 7.6126 -3.1418 -4.7220 17 7 7.3625 -2.2807 -3.7692 18 6 4.8755 -2.9907 -1.0894 19 6 4.2350 -2.2630 0.0968 20 1 -0.4850 0.8400 -0.0004 21 1 4.5599 0.3797 -0.9099 22 1 2.9911 0.3488 -1.7556 23 1 4.9255 -0.2944 -3.2377 24 1 3.7004 -1.5780 -3.0902 25 1 6.2784 -1.3995 -1.4650 26 1 4.8245 -4.3258 -3.4825 27 1 6.5143 -4.9422 -5.3947 28 1 8.4597 -3.1173 -5.3914 29 1 4.1092 -3.5405 -1.6357 30 1 5.6319 -3.6856 -0.7244 31 1 5.0113 -1.7872 0.6961 32 1 3.6838 -2.9767 0.7090 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731355366.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:19 Heat of formation + Delta-G solvation = 82.500672 kcal Electronic energy + Delta-G solvation = -15196.032637 eV Core-core repulsion = 12772.268115 eV Total energy + Delta-G solvation = -2423.764522 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.11569 -39.44329 -35.60430 -33.55115 -32.15609 -31.09197 -30.65812 -26.86986 -24.69336 -24.02951 -22.32664 -21.74032 -20.51200 -18.92397 -18.21317 -17.08001 -16.05794 -15.96681 -15.66656 -15.33389 -15.11499 -14.53175 -14.34171 -14.15287 -13.79570 -13.61649 -13.42074 -12.70990 -12.58615 -12.30800 -12.09002 -11.81040 -11.72835 -11.49258 -11.44149 -10.78408 -10.32616 -9.46534 -9.02852 -8.18883 -5.51963 1.03950 1.28439 1.40352 1.48056 1.58684 2.01332 2.39125 3.00020 3.27906 3.48017 3.73315 3.98820 4.01658 4.13275 4.18572 4.32128 4.49303 4.59257 4.71396 4.76122 4.84443 4.86216 4.94941 4.98537 5.03319 5.20737 5.31159 5.83350 5.84019 6.10763 6.17196 6.85257 6.86317 7.57321 7.97010 9.00530 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051238 B = 0.007626 C = 0.007280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.333660 B = 3670.623758 C = 3845.202505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.032 4.032 3 Si 0.939 3.061 4 H -0.278 1.278 5 H -0.310 1.310 6 H -0.258 1.258 7 C -0.249 4.249 8 H 0.059 0.941 9 N -0.619 5.619 10 C 0.126 3.874 11 C -0.129 4.129 12 C 0.173 3.827 13 N -0.372 5.372 14 C 0.049 3.951 15 C -0.284 4.284 16 C 0.037 3.963 17 N -0.344 5.344 18 C -0.127 4.127 19 C 0.148 3.852 20 H 0.262 0.738 21 H 0.039 0.961 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.187 0.813 27 H 0.170 0.830 28 H 0.209 0.791 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.912 -6.968 -7.121 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.227 4.227 3 Si 0.768 3.232 4 H -0.205 1.205 5 H -0.239 1.239 6 H -0.183 1.183 7 C -0.378 4.378 8 H 0.077 0.923 9 N -0.344 5.344 10 C 0.000 4.000 11 C -0.169 4.169 12 C 0.071 3.929 13 N -0.154 5.154 14 C -0.097 4.097 15 C -0.313 4.313 16 C -0.148 4.148 17 N -0.165 5.165 18 C -0.167 4.167 19 C 0.022 3.978 20 H 0.071 0.929 21 H 0.057 0.943 22 H 0.074 0.926 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.204 0.796 27 H 0.187 0.813 28 H 0.226 0.774 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.127 -5.767 -6.385 16.541 hybrid contribution -0.556 0.307 -0.332 0.717 sum 13.571 -5.460 -6.716 16.096 Atomic orbital electron populations 1.69949 1.07355 1.27232 1.55450 1.25870 0.95770 1.00789 1.00256 0.86028 0.79027 0.80671 0.77453 1.20470 1.23914 1.18272 1.18877 0.86561 0.93729 1.38670 0.92286 1.44534 1.08044 1.34563 1.47212 1.21340 0.96894 0.92068 0.89670 1.22284 0.97462 0.98732 0.98443 1.21166 0.93755 0.93684 0.84289 1.49104 1.18071 1.20824 1.27382 1.23001 1.01123 0.90130 0.95484 1.21840 0.98157 1.06036 1.05276 1.24423 1.00714 0.92821 0.96846 1.77290 1.01025 1.25496 1.12687 1.22285 1.00194 0.97295 0.96941 1.21081 0.92168 0.90758 0.93765 0.92920 0.94304 0.92642 0.91321 0.91967 0.88678 0.79634 0.81255 0.77439 0.90953 0.89075 0.93925 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.97 13.97 21.65 0.30 -58.67 16 2 C -0.03 -1.81 5.23 84.86 0.44 -1.37 16 3 Si 0.94 45.62 24.35 68.60 1.67 47.29 16 4 H -0.28 -12.89 6.62 99.48 0.66 -12.23 16 5 H -0.31 -15.40 7.11 99.48 0.71 -14.70 16 6 H -0.26 -11.92 6.64 99.48 0.66 -11.26 16 7 C -0.25 -13.58 10.03 84.04 0.84 -12.74 16 8 H 0.06 3.49 8.06 -2.91 -0.02 3.46 16 9 N -0.62 -27.56 2.77 -699.07 -1.94 -29.50 16 10 C 0.13 5.18 4.20 86.36 0.36 5.54 16 11 C -0.13 -4.43 5.68 30.67 0.17 -4.26 16 12 C 0.17 5.20 3.16 45.02 0.14 5.35 16 13 N -0.37 -10.86 3.53 -327.35 -1.15 -12.01 16 14 C 0.05 1.21 10.59 83.54 0.89 2.10 16 15 C -0.28 -6.21 10.80 21.99 0.24 -5.97 16 16 C 0.04 0.87 12.03 85.24 1.03 1.90 16 17 N -0.34 -10.39 12.58 -57.02 -0.72 -11.11 16 18 C -0.13 -3.58 4.97 30.67 0.15 -3.43 16 19 C 0.15 5.12 6.52 86.36 0.56 5.69 16 20 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 21 H 0.04 1.54 7.08 -2.38 -0.02 1.52 16 22 H 0.06 2.55 4.50 -2.39 -0.01 2.54 16 23 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 26 H 0.19 3.80 7.30 -2.91 -0.02 3.78 16 27 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 28 H 0.21 3.26 8.06 -2.91 -0.02 3.24 16 29 H 0.07 2.07 7.23 -2.39 -0.02 2.05 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.07 2.52 7.93 -2.39 -0.02 2.50 16 Total: -1.00 -66.13 258.00 4.00 -62.13 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.00 Total: 9.05 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 4.83 Total: -7.19 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -3.50 Total: -111.28 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.67 Total: 47.29 kcal Total: -66.13 4.00 -62.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731355366.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.629 kcal (2) G-P(sol) polarization free energy of solvation -66.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds