Wall clock time and date at job start Sun Mar 29 2020 22:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46899 * 110.99881 * 2 1 4 4 C 1.50700 * 109.46956 * 66.04715 * 3 2 1 5 5 H 1.08005 * 120.00176 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00153 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99784 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00153 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47296 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47002 * 119.99953 * 8 6 4 11 11 H 1.48493 * 109.47070 * 239.99653 * 8 6 4 12 12 C 1.46896 * 110.99796 * 236.04741 * 2 1 3 13 13 C 1.50700 * 109.47210 * 287.99868 * 12 2 1 14 14 C 1.38167 * 120.02471 * 105.36454 * 13 12 2 15 15 C 1.38251 * 120.05443 * 179.97438 * 14 13 12 16 16 C 1.38289 * 120.10753 * 359.97438 * 15 14 13 17 17 C 1.38122 * 120.06127 * 359.97438 * 16 15 14 18 18 C 1.38710 * 120.03000 * 285.31874 * 13 12 2 19 19 O 1.35896 * 120.05363 * 0.04308 * 18 13 12 20 20 H 1.08998 * 109.47243 * 186.13782 * 1 2 3 21 21 H 1.09000 * 109.47064 * 306.13982 * 1 2 3 22 22 H 1.09003 * 109.46894 * 66.13747 * 1 2 3 23 23 H 1.08996 * 109.46894 * 186.04446 * 3 2 1 24 24 H 1.09001 * 109.47152 * 306.04589 * 3 2 1 25 25 H 0.96992 * 119.99964 * 180.02562 * 7 6 4 26 26 H 1.09006 * 109.47066 * 168.00102 * 12 2 1 27 27 H 1.09001 * 109.47332 * 48.00360 * 12 2 1 28 28 H 1.08002 * 119.97579 * 359.97438 * 14 13 12 29 29 H 1.07990 * 119.94587 * 179.97438 * 15 14 13 30 30 H 1.08004 * 119.97128 * 180.02562 * 16 15 14 31 31 H 1.07995 * 120.02959 * 179.72733 * 17 16 15 32 32 H 0.96704 * 114.00062 * 264.85764 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0277 3.3491 1.5290 7 7 2.7137 4.0012 0.6159 8 14 1.5826 4.1868 3.1382 9 1 0.8145 3.2445 3.9910 10 1 2.8241 4.5933 3.8445 11 1 0.7562 5.3884 2.8587 12 6 1.9954 -0.7659 -1.1376 13 6 1.7656 -2.2366 -0.9024 14 6 0.7735 -2.9011 -1.5975 15 6 0.5624 -4.2504 -1.3826 16 6 1.3437 -4.9384 -0.4723 17 6 2.3374 -4.2789 0.2244 18 6 2.5504 -2.9245 0.0113 19 8 3.5269 -2.2731 0.6962 20 1 -0.3633 -1.0217 0.1099 21 1 -0.3633 0.6061 0.8299 22 1 -0.3633 0.4158 -0.9399 23 1 3.0797 1.3444 -0.1082 24 1 1.5611 1.9273 -0.8309 25 1 2.9888 4.9170 0.7782 26 1 3.0642 -0.5770 -1.2395 27 1 1.4837 -0.4595 -2.0499 28 1 0.1623 -2.3661 -2.3093 29 1 -0.2137 -4.7680 -1.9266 30 1 1.1772 -5.9926 -0.3064 31 1 2.9443 -4.8157 0.9384 32 1 4.4034 -2.3432 0.2937 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731843504.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:17 Heat of formation + Delta-G solvation = -13.573559 kcal Electronic energy + Delta-G solvation = -14764.514222 eV Core-core repulsion = 12304.290857 eV Total energy + Delta-G solvation = -2460.223365 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.63530 -36.40687 -36.17762 -32.66457 -31.14224 -29.59161 -27.11873 -26.42630 -23.78309 -22.35846 -21.30472 -20.02812 -17.98040 -16.38939 -15.75047 -15.56764 -15.10241 -14.61372 -14.09939 -13.77455 -13.59425 -13.34928 -12.44892 -12.05378 -11.88312 -11.70480 -11.63423 -11.18530 -10.93143 -10.81114 -10.56421 -10.42356 -10.09969 -9.77366 -9.15519 -8.68332 -8.39234 -8.29702 -7.13169 -5.97742 -3.97937 1.47534 1.50725 3.34715 3.41772 3.47874 3.82994 4.48162 4.53479 5.00215 5.05033 5.15957 5.31086 5.39170 5.47175 5.70225 5.90499 5.97762 6.11988 6.23990 6.30537 6.39133 6.51715 6.61598 6.77772 6.84881 7.02769 7.34813 7.39192 7.86746 8.05398 8.15320 8.28067 8.62127 9.10162 9.65779 11.13362 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046161 B = 0.006501 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.430581 B = 4306.309888 C = 4441.936907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.526 5.526 3 C 0.194 3.806 4 C -0.501 4.501 5 H 0.063 0.937 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.097 3.903 13 C -0.089 4.089 14 C -0.103 4.103 15 C -0.136 4.136 16 C -0.114 4.114 17 C -0.156 4.156 18 C 0.132 3.868 19 O -0.478 6.478 20 H 0.043 0.957 21 H 0.074 0.926 22 H 0.008 0.992 23 H 0.030 0.970 24 H -0.011 1.011 25 H 0.260 0.740 26 H 0.075 0.925 27 H 0.029 0.971 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.292 -15.128 -4.715 15.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.250 5.250 3 C 0.069 3.931 4 C -0.540 4.540 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.031 4.031 13 C -0.090 4.090 14 C -0.122 4.122 15 C -0.154 4.154 16 C -0.133 4.133 17 C -0.175 4.175 18 C 0.086 3.914 19 O -0.286 6.286 20 H 0.062 0.938 21 H 0.093 0.907 22 H 0.027 0.973 23 H 0.048 0.952 24 H 0.007 0.993 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.047 0.953 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -1.502 -15.002 -3.922 15.579 hybrid contribution -0.082 0.828 -0.193 0.854 sum -1.585 -14.175 -4.115 14.845 Atomic orbital electron populations 1.22235 0.89064 0.99690 1.00103 1.62066 1.06632 1.17365 1.38929 1.19743 0.95364 0.81443 0.96545 1.21211 1.34355 0.96752 1.01664 0.91833 1.24986 0.95402 0.97354 0.96975 1.69971 1.38693 1.11393 1.34066 0.86445 0.78139 0.79240 0.83635 1.19671 1.21025 1.21178 1.20871 1.00528 0.88815 0.92874 1.20395 0.96619 0.96780 0.95193 1.20996 0.97126 0.94370 0.99699 1.21045 1.00249 0.94534 0.99598 1.20912 0.95928 0.99557 0.96872 1.21452 1.00615 0.94066 1.01356 1.18313 0.92175 0.89306 0.91575 1.85007 1.18684 1.74721 1.50218 0.93776 0.90723 0.97340 0.95187 0.99347 0.93072 0.90654 0.95273 0.86160 0.86337 0.86275 0.85874 0.76367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.23 60.07 0.55 1.35 16 2 N -0.53 -12.02 4.70 -245.82 -1.16 -13.18 16 3 C 0.19 5.23 4.71 -4.98 -0.02 5.20 16 4 C -0.50 -14.57 8.43 -34.44 -0.29 -14.86 16 5 H 0.06 1.86 7.14 -52.48 -0.37 1.48 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 8 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 C 0.10 1.84 4.72 -4.98 -0.02 1.82 16 13 C -0.09 -1.46 4.68 -104.47 -0.49 -1.95 16 14 C -0.10 -1.46 9.30 -39.60 -0.37 -1.83 16 15 C -0.14 -1.66 10.04 -39.56 -0.40 -2.06 16 16 C -0.11 -1.37 10.04 -39.60 -0.40 -1.77 16 17 C -0.16 -2.11 9.99 -39.43 -0.39 -2.50 16 18 C 0.13 2.10 6.68 -39.22 -0.26 1.84 16 19 O -0.48 -7.91 12.84 -19.41 -0.25 -8.16 16 20 H 0.04 0.83 7.25 -51.93 -0.38 0.46 16 21 H 0.07 1.67 6.71 -51.93 -0.35 1.32 16 22 H 0.01 0.16 8.07 -51.93 -0.42 -0.25 16 23 H 0.03 0.86 7.86 -51.93 -0.41 0.45 16 24 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.08 1.41 7.68 -51.93 -0.40 1.02 16 27 H 0.03 0.53 7.81 -51.93 -0.41 0.12 16 28 H 0.12 1.54 8.00 -52.49 -0.42 1.12 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 31 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.38 4.32 9.06 45.56 0.41 4.73 16 LS Contribution 275.16 15.07 4.15 4.15 Total: -1.00 -32.74 275.16 -7.29 -40.03 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -3.56 Total: -0.20 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -2.19 Total: -13.29 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: -0.42 Total: -39.72 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.25 Total: -8.16 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.74 -7.29 -40.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731843504.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.461 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds