Wall clock time and date at job start Sun Mar 29 2020 22:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46899 * 110.99881 * 2 1 4 4 C 1.50700 * 109.46956 * 66.04715 * 3 2 1 5 5 H 1.08005 * 120.00176 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00153 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99784 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00153 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47296 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47002 * 119.99953 * 8 6 4 11 11 H 1.48493 * 109.47070 * 239.99653 * 8 6 4 12 12 C 1.46896 * 110.99796 * 236.04741 * 2 1 3 13 13 C 1.50700 * 109.47210 * 287.99868 * 12 2 1 14 14 C 1.38167 * 120.02471 * 105.36454 * 13 12 2 15 15 C 1.38251 * 120.05443 * 179.97438 * 14 13 12 16 16 C 1.38289 * 120.10753 * 359.97438 * 15 14 13 17 17 C 1.38122 * 120.06127 * 359.97438 * 16 15 14 18 18 C 1.38710 * 120.03000 * 285.31874 * 13 12 2 19 19 O 1.35896 * 120.05363 * 0.04308 * 18 13 12 20 20 H 1.08998 * 109.47243 * 186.13782 * 1 2 3 21 21 H 1.09000 * 109.47064 * 306.13982 * 1 2 3 22 22 H 1.09003 * 109.46894 * 66.13747 * 1 2 3 23 23 H 1.08996 * 109.46894 * 186.04446 * 3 2 1 24 24 H 1.09001 * 109.47152 * 306.04589 * 3 2 1 25 25 H 0.96992 * 119.99964 * 180.02562 * 7 6 4 26 26 H 1.09006 * 109.47066 * 168.00102 * 12 2 1 27 27 H 1.09001 * 109.47332 * 48.00360 * 12 2 1 28 28 H 1.08002 * 119.97579 * 359.97438 * 14 13 12 29 29 H 1.07990 * 119.94587 * 179.97438 * 15 14 13 30 30 H 1.08004 * 119.97128 * 180.02562 * 16 15 14 31 31 H 1.07995 * 120.02959 * 179.72733 * 17 16 15 32 32 H 0.96704 * 114.00062 * 264.85764 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0277 3.3491 1.5290 7 7 2.7137 4.0012 0.6159 8 14 1.5826 4.1868 3.1382 9 1 0.8145 3.2445 3.9910 10 1 2.8241 4.5933 3.8445 11 1 0.7562 5.3884 2.8587 12 6 1.9954 -0.7659 -1.1376 13 6 1.7656 -2.2366 -0.9024 14 6 0.7735 -2.9011 -1.5975 15 6 0.5624 -4.2504 -1.3826 16 6 1.3437 -4.9384 -0.4723 17 6 2.3374 -4.2789 0.2244 18 6 2.5504 -2.9245 0.0113 19 8 3.5269 -2.2731 0.6962 20 1 -0.3633 -1.0217 0.1099 21 1 -0.3633 0.6061 0.8299 22 1 -0.3633 0.4158 -0.9399 23 1 3.0797 1.3444 -0.1082 24 1 1.5611 1.9273 -0.8309 25 1 2.9888 4.9170 0.7782 26 1 3.0642 -0.5770 -1.2395 27 1 1.4837 -0.4595 -2.0499 28 1 0.1623 -2.3661 -2.3093 29 1 -0.2137 -4.7680 -1.9266 30 1 1.1772 -5.9926 -0.3064 31 1 2.9443 -4.8157 0.9384 32 1 4.4034 -2.3432 0.2937 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731843504.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:17 Heat of formation + Delta-G solvation = -37.298645 kcal Electronic energy + Delta-G solvation = -14765.543019 eV Core-core repulsion = 12304.290857 eV Total energy + Delta-G solvation = -2461.252162 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.78319 -38.06633 -37.39292 -34.77017 -32.51115 -30.68657 -29.16566 -27.95116 -25.61962 -23.42983 -22.87278 -21.59403 -19.13290 -18.52517 -16.92058 -16.89267 -16.75028 -16.07547 -15.78876 -15.50084 -15.01237 -14.64119 -14.01413 -13.62898 -13.43263 -13.20699 -12.89835 -12.81589 -12.69622 -12.56336 -12.32345 -12.20676 -11.79997 -11.39015 -11.11991 -10.62970 -9.75500 -9.40368 -8.96866 -8.20948 -6.30775 0.41716 0.45080 1.39580 1.40672 1.54655 2.40143 2.77099 3.11068 3.45182 3.51271 3.90020 4.02779 4.25577 4.34294 4.47534 4.58473 4.67124 4.69961 4.74127 5.03156 5.06159 5.12458 5.16231 5.27174 5.51623 5.60510 5.63677 5.69543 6.03063 6.05531 6.34587 6.63709 6.85065 7.02218 7.38581 8.90345 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046161 B = 0.006501 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.430581 B = 4306.309888 C = 4441.936907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.537 5.537 3 C 0.210 3.790 4 C -0.521 4.521 5 H 0.058 0.942 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.277 1.277 11 H -0.275 1.275 12 C 0.101 3.899 13 C -0.115 4.115 14 C -0.108 4.108 15 C -0.131 4.131 16 C -0.104 4.104 17 C -0.160 4.160 18 C 0.110 3.890 19 O -0.505 6.505 20 H 0.067 0.933 21 H 0.055 0.945 22 H 0.014 0.986 23 H 0.003 0.997 24 H -0.038 1.038 25 H 0.265 0.735 26 H 0.064 0.936 27 H 0.034 0.966 28 H 0.130 0.870 29 H 0.152 0.848 30 H 0.155 0.845 31 H 0.140 0.860 32 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.445 -16.991 -4.226 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.261 5.261 3 C 0.084 3.916 4 C -0.560 4.560 5 H 0.076 0.924 6 C -0.196 4.196 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.191 1.191 10 H -0.202 1.202 11 H -0.201 1.201 12 C -0.026 4.026 13 C -0.116 4.116 14 C -0.126 4.126 15 C -0.149 4.149 16 C -0.122 4.122 17 C -0.179 4.179 18 C 0.065 3.935 19 O -0.316 6.316 20 H 0.086 0.914 21 H 0.073 0.927 22 H 0.033 0.967 23 H 0.021 0.979 24 H -0.020 1.020 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.148 0.852 29 H 0.170 0.830 30 H 0.173 0.827 31 H 0.158 0.842 32 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -2.652 -16.890 -3.449 17.441 hybrid contribution 0.291 1.297 -0.411 1.392 sum -2.361 -15.593 -3.861 16.236 Atomic orbital electron populations 1.22163 0.87878 1.00731 0.99585 1.61975 1.07794 1.14927 1.41411 1.19375 0.93590 0.83644 0.94966 1.21467 1.34727 0.97474 1.02294 0.92392 1.25910 0.94993 0.97954 1.00771 1.70088 1.39391 1.11924 1.36148 0.85317 0.78143 0.78147 0.78903 1.19064 1.20234 1.20079 1.20825 0.99711 0.90474 0.91638 1.20234 0.98853 0.95070 0.97473 1.21177 0.96487 0.95520 0.99454 1.21431 1.00559 0.93627 0.99257 1.21370 0.94339 1.01178 0.95357 1.21676 1.01347 0.93025 1.01837 1.18593 0.92353 0.90512 0.92025 1.84940 1.20053 1.75410 1.51214 0.91430 0.92661 0.96706 0.97869 1.02010 0.92630 0.91777 0.94753 0.85197 0.83017 0.82731 0.84231 0.74507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.88 9.23 127.69 1.18 3.06 16 2 N -0.54 -25.20 4.70 -931.64 -4.38 -29.58 16 3 C 0.21 11.85 4.71 85.56 0.40 12.25 16 4 C -0.52 -31.08 8.43 25.60 0.22 -30.86 16 5 H 0.06 3.45 7.14 -2.91 -0.02 3.43 16 6 C 0.00 0.09 5.46 84.65 0.46 0.55 16 7 N -0.93 -57.68 13.29 21.45 0.28 -57.39 16 8 Si 0.97 45.80 29.54 68.60 2.03 47.83 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.10 3.93 4.72 85.56 0.40 4.33 16 13 C -0.12 -3.74 4.68 -19.77 -0.09 -3.83 16 14 C -0.11 -2.81 9.30 22.26 0.21 -2.61 16 15 C -0.13 -2.69 10.04 22.29 0.22 -2.47 16 16 C -0.10 -2.08 10.04 22.25 0.22 -1.86 16 17 C -0.16 -3.95 9.99 22.37 0.22 -3.72 16 18 C 0.11 3.45 6.68 22.51 0.15 3.60 16 19 O -0.50 -17.00 12.84 -92.38 -1.19 -18.19 16 20 H 0.07 2.50 7.25 -2.39 -0.02 2.48 16 21 H 0.05 2.50 6.71 -2.39 -0.02 2.49 16 22 H 0.01 0.59 8.07 -2.39 -0.02 0.57 16 23 H 0.00 0.19 7.86 -2.39 -0.02 0.18 16 24 H -0.04 -2.27 8.12 -2.39 -0.02 -2.29 16 25 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 26 H 0.06 2.55 7.68 -2.38 -0.02 2.53 16 27 H 0.03 1.27 7.81 -2.39 -0.02 1.25 16 28 H 0.13 3.05 8.00 -2.91 -0.02 3.03 16 29 H 0.15 2.12 8.06 -2.92 -0.02 2.10 16 30 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 31 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 32 H 0.40 9.38 9.06 -74.05 -0.67 8.70 16 Total: -1.00 -71.17 275.16 0.78 -70.38 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.44 Total: 8.51 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 3.60 Total: -21.56 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -4.09 Total: -86.97 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -1.19 Total: -18.19 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -71.17 0.78 -70.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731843504.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.084 kcal (2) G-P(sol) polarization free energy of solvation -71.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds