Wall clock time and date at job start Sun Mar 29 2020 21:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21471 * 119.99553 * 0.02562 * 13 12 2 15 15 C 1.48535 * 120.00343 * 179.97438 * 13 12 2 16 16 N 1.32456 * 119.18718 * 359.73442 * 15 13 12 17 17 C 1.32112 * 120.76936 * 179.75428 * 16 15 13 18 18 C 1.38800 * 119.16011 * 0.50874 * 17 16 15 19 19 C 1.38792 * 118.50887 * 359.74491 * 18 17 16 20 20 N 1.32109 * 119.16636 * 0.02562 * 19 18 17 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 25 25 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 26 26 H 1.08005 * 120.41711 * 180.24938 * 17 16 15 27 27 H 1.08007 * 120.74199 * 179.76638 * 18 17 16 28 28 H 1.07998 * 120.41482 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8586 1.1603 -2.4116 15 6 2.6427 -0.7185 -3.5698 16 7 2.9586 -2.0024 -3.4907 17 6 3.3979 -2.6569 -4.5508 18 6 3.5364 -1.9795 -5.7544 19 6 3.2010 -0.6335 -5.7994 20 7 2.7634 -0.0420 -4.7022 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.9026 -0.5284 4.4375 25 1 2.2490 -1.6318 -1.1526 26 1 3.6500 -3.7048 -4.4808 27 1 3.8969 -2.4886 -6.6361 28 1 3.2965 -0.0767 -6.7199 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743324965.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:50 Heat of formation + Delta-G solvation = 23.500109 kcal Electronic energy + Delta-G solvation = -14393.383869 eV Core-core repulsion = 11831.227796 eV Total energy + Delta-G solvation = -2562.156073 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.15425 -38.69652 -35.10194 -33.88295 -32.56242 -32.07211 -29.80679 -25.48114 -25.06137 -24.57893 -21.70503 -19.84726 -18.44159 -17.56288 -16.56597 -15.90457 -15.46610 -15.18382 -15.04041 -14.22017 -13.71460 -13.69004 -13.08481 -12.88295 -12.18619 -11.82376 -11.29264 -11.26457 -11.01402 -10.79936 -10.17161 -9.81894 -9.75695 -9.38228 -9.35525 -9.21829 -8.74240 -8.18334 -6.18518 -4.21239 0.45308 0.96799 2.99738 3.25913 3.27023 3.37904 3.42867 3.96651 3.99953 4.33920 4.38731 4.58954 4.79705 4.88837 5.15911 5.32153 5.55549 6.12766 6.32354 6.37991 6.55415 6.80786 6.85126 7.18076 7.23421 7.49666 7.81065 8.18886 8.51823 8.74942 8.86539 9.41399 10.93568 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055392 B = 0.006922 C = 0.006395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.363330 B = 4043.892537 C = 4377.109501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.235 3.765 3 H 0.052 0.948 4 C -0.534 4.534 5 H 0.082 0.918 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.673 5.673 13 C 0.567 3.433 14 O -0.521 6.521 15 C 0.295 3.705 16 N -0.492 5.492 17 C 0.145 3.855 18 C -0.220 4.220 19 C 0.142 3.858 20 N -0.472 5.472 21 H 0.037 0.963 22 H 0.050 0.950 23 H 0.055 0.945 24 H 0.267 0.733 25 H 0.407 0.593 26 H 0.174 0.826 27 H 0.151 0.849 28 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.711 -4.029 -16.922 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.132 3.868 3 H 0.070 0.930 4 C -0.572 4.572 5 H 0.100 0.900 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.714 3.286 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.185 1.185 12 N -0.323 5.323 13 C 0.347 3.653 14 O -0.395 6.395 15 C 0.025 3.975 16 N -0.208 5.208 17 C -0.022 4.022 18 C -0.242 4.242 19 C -0.025 4.025 20 N -0.187 5.187 21 H 0.056 0.944 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.242 0.758 26 H 0.191 0.809 27 H 0.169 0.831 28 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.158 -2.674 -15.864 16.129 hybrid contribution -0.079 -0.319 -0.673 0.749 sum 1.079 -2.993 -16.536 16.839 Atomic orbital electron populations 1.22462 0.98955 1.01120 0.99497 1.19237 0.90395 0.94786 0.82336 0.93026 1.21017 1.33360 1.14533 0.88327 0.89953 1.24816 0.95493 0.96719 0.95455 1.69870 1.44867 1.40072 0.98027 0.86884 0.80549 0.83609 0.77528 1.20238 1.22116 1.18547 1.46085 1.63015 1.14601 1.08573 1.17349 0.79851 0.86155 0.81919 1.90761 1.50065 1.14732 1.83983 1.23383 0.93429 0.87019 0.93696 1.68409 1.10836 1.09245 1.32336 1.23333 0.90636 1.00634 0.87594 1.23131 1.02829 0.97296 1.00944 1.23378 0.90292 0.92165 0.96652 1.68316 1.11880 1.39463 0.99008 0.94404 0.93206 0.92581 0.92267 0.75761 0.80869 0.83134 0.80989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 8.96 37.16 0.33 -3.38 15 2 C 0.24 5.81 2.15 -69.08 -0.15 5.66 15 3 H 0.05 1.38 6.64 -51.93 -0.34 1.04 15 4 C -0.53 -14.73 9.31 -34.44 -0.32 -15.05 15 5 H 0.08 2.39 7.98 -52.49 -0.42 1.97 15 6 C 0.08 2.23 5.45 -17.82 -0.10 2.14 15 7 N -0.89 -26.58 13.96 55.43 0.77 -25.81 15 8 Si 0.88 21.90 24.37 -169.99 -4.14 17.76 15 9 H -0.28 -6.58 6.87 56.52 0.39 -6.20 15 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 15 11 H -0.26 -6.41 6.53 56.52 0.37 -6.04 15 12 N -0.67 -14.59 5.06 -55.66 -0.28 -14.87 15 13 C 0.57 12.17 7.82 -12.01 -0.09 12.07 15 14 O -0.52 -12.75 16.53 5.39 0.09 -12.66 15 15 C 0.29 5.25 7.59 -157.08 -1.19 4.05 15 16 N -0.49 -7.41 9.58 -11.12 -0.11 -7.52 15 17 C 0.14 1.49 11.30 -17.22 -0.19 1.30 15 18 C -0.22 -1.84 10.18 -39.17 -0.40 -2.24 15 19 C 0.14 1.53 11.30 -17.23 -0.19 1.34 15 20 N -0.47 -7.70 10.13 -11.12 -0.11 -7.81 15 21 H 0.04 0.82 8.14 -51.93 -0.42 0.39 15 22 H 0.05 1.16 3.27 -51.93 -0.17 0.99 15 23 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 24 H 0.27 7.48 8.31 -40.82 -0.34 7.14 15 25 H 0.41 8.14 7.84 -40.82 -0.32 7.82 15 26 H 0.17 1.11 8.06 -52.48 -0.42 0.69 15 27 H 0.15 0.63 8.06 -52.48 -0.42 0.21 15 28 H 0.17 1.17 8.06 -52.49 -0.42 0.75 15 LS Contribution 248.70 15.07 3.75 3.75 Total: -1.00 -33.67 248.70 -4.89 -38.56 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -2.55 Total: 2.72 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -2.31 Total: 5.89 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.27 Total: -56.01 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.09 Total: -12.66 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.14 Total: 17.76 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -33.67 -4.89 -38.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743324965.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.062 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds