Wall clock time and date at job start Sun Mar 29 2020 21:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21471 * 119.99553 * 0.02562 * 13 12 2 15 15 C 1.48535 * 120.00343 * 179.97438 * 13 12 2 16 16 N 1.32456 * 119.18718 * 359.73442 * 15 13 12 17 17 C 1.32112 * 120.76936 * 179.75428 * 16 15 13 18 18 C 1.38800 * 119.16011 * 0.50874 * 17 16 15 19 19 C 1.38792 * 118.50887 * 359.74491 * 18 17 16 20 20 N 1.32109 * 119.16636 * 0.02562 * 19 18 17 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 25 25 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 26 26 H 1.08005 * 120.41711 * 180.24938 * 17 16 15 27 27 H 1.08007 * 120.74199 * 179.76638 * 18 17 16 28 28 H 1.07998 * 120.41482 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8586 1.1603 -2.4116 15 6 2.6427 -0.7185 -3.5698 16 7 2.9586 -2.0024 -3.4907 17 6 3.3979 -2.6569 -4.5508 18 6 3.5364 -1.9795 -5.7544 19 6 3.2010 -0.6335 -5.7994 20 7 2.7634 -0.0420 -4.7022 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.9026 -0.5284 4.4375 25 1 2.2490 -1.6318 -1.1526 26 1 3.6500 -3.7048 -4.4808 27 1 3.8969 -2.4886 -6.6361 28 1 3.2965 -0.0767 -6.7199 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743324965.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:49 Heat of formation + Delta-G solvation = -3.550336 kcal Electronic energy + Delta-G solvation = -14394.556864 eV Core-core repulsion = 11831.227796 eV Total energy + Delta-G solvation = -2563.329069 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.20887 -40.32100 -36.96371 -34.99874 -34.34931 -33.33390 -31.57749 -27.28310 -26.57321 -25.47804 -23.31961 -21.58476 -19.98725 -18.64068 -18.35474 -17.31049 -16.92622 -16.57725 -16.33202 -15.69389 -15.28110 -14.87602 -14.73550 -14.46728 -14.15339 -13.71041 -13.25872 -12.80183 -12.26901 -12.14707 -12.04737 -11.62977 -11.32973 -11.07337 -10.87706 -10.71514 -10.35627 -9.99989 -8.38462 -6.45428 -0.57448 0.12653 1.28494 1.36669 1.46725 1.63283 1.87885 2.26694 2.83422 2.96341 2.97213 3.37303 3.69097 3.93035 4.13575 4.38176 4.42978 4.52746 4.64453 4.79124 4.93366 5.26999 5.31984 5.36122 5.51307 5.94474 6.08349 6.52481 6.61929 6.95265 7.11660 7.26212 8.76799 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055392 B = 0.006922 C = 0.006395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.363330 B = 4043.892537 C = 4377.109501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.240 3.760 3 H 0.028 0.972 4 C -0.536 4.536 5 H 0.056 0.944 6 C 0.031 3.969 7 N -0.931 5.931 8 Si 0.939 3.061 9 H -0.256 1.256 10 H -0.290 1.290 11 H -0.262 1.262 12 N -0.674 5.674 13 C 0.566 3.434 14 O -0.563 6.563 15 C 0.262 3.738 16 N -0.511 5.511 17 C 0.132 3.868 18 C -0.177 4.177 19 C 0.128 3.872 20 N -0.508 5.508 21 H 0.046 0.954 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.272 0.728 25 H 0.413 0.587 26 H 0.216 0.784 27 H 0.208 0.792 28 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.718 -4.933 -19.585 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.136 3.864 3 H 0.046 0.954 4 C -0.574 4.574 5 H 0.074 0.926 6 C -0.169 4.169 7 N -0.570 5.570 8 Si 0.766 3.234 9 H -0.182 1.182 10 H -0.217 1.217 11 H -0.186 1.186 12 N -0.324 5.324 13 C 0.348 3.652 14 O -0.440 6.440 15 C -0.008 4.008 16 N -0.229 5.229 17 C -0.033 4.033 18 C -0.198 4.198 19 C -0.037 4.037 20 N -0.224 5.224 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.250 0.750 26 H 0.232 0.768 27 H 0.225 0.775 28 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.173 -3.615 -18.559 18.944 hybrid contribution 0.063 -0.182 -0.044 0.198 sum 1.236 -3.798 -18.603 19.027 Atomic orbital electron populations 1.22350 0.97258 1.01969 0.99765 1.18940 0.91665 0.93333 0.82506 0.95389 1.21177 1.32741 1.13732 0.89759 0.92578 1.25549 0.96776 0.99439 0.95124 1.69973 1.46470 1.41867 0.98673 0.85996 0.79864 0.80161 0.77383 1.18162 1.21669 1.18639 1.45891 1.63459 1.14772 1.08252 1.17884 0.78624 0.85816 0.82834 1.90707 1.51799 1.16515 1.84995 1.22340 0.97407 0.88198 0.92861 1.68305 1.11515 1.08196 1.34848 1.24176 0.89654 1.02294 0.87177 1.23725 0.98303 0.95959 1.01789 1.24171 0.89470 0.93855 0.96179 1.68180 1.13225 1.41006 0.99968 0.93513 0.93433 0.91444 0.91893 0.75006 0.76788 0.77540 0.77129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.07 8.96 71.98 0.65 -6.42 15 2 C 0.24 12.08 2.15 44.25 0.10 12.18 15 3 H 0.03 1.55 6.64 -2.39 -0.02 1.54 15 4 C -0.54 -30.33 9.31 25.60 0.24 -30.10 15 5 H 0.06 3.39 7.98 -2.91 -0.02 3.37 15 6 C 0.03 1.79 5.45 84.66 0.46 2.25 15 7 N -0.93 -56.52 13.96 21.45 0.30 -56.22 15 8 Si 0.94 45.27 24.37 68.60 1.67 46.95 15 9 H -0.26 -11.50 6.87 99.48 0.68 -10.82 15 10 H -0.29 -13.67 7.11 99.48 0.71 -12.97 15 11 H -0.26 -12.59 6.53 99.48 0.65 -11.94 15 12 N -0.67 -30.08 5.06 -448.31 -2.27 -32.35 15 13 C 0.57 25.00 7.82 86.99 0.68 25.68 15 14 O -0.56 -28.55 16.53 -3.62 -0.06 -28.61 15 15 C 0.26 9.30 7.59 137.68 1.05 10.35 15 16 N -0.51 -14.80 9.58 -189.09 -1.81 -16.61 15 17 C 0.13 2.23 11.30 84.79 0.96 3.19 15 18 C -0.18 -2.04 10.18 22.54 0.23 -1.81 15 19 C 0.13 2.32 11.30 84.78 0.96 3.28 15 20 N -0.51 -16.10 10.13 -189.11 -1.92 -18.02 15 21 H 0.05 2.01 8.14 -2.39 -0.02 1.99 15 22 H 0.05 2.16 3.27 -2.39 -0.01 2.15 15 23 H 0.07 2.86 8.14 -2.38 -0.02 2.84 15 24 H 0.27 15.39 8.31 -92.70 -0.77 14.62 15 25 H 0.41 17.08 7.84 -92.71 -0.73 16.35 15 26 H 0.22 1.68 8.06 -2.91 -0.02 1.66 15 27 H 0.21 0.11 8.06 -2.91 -0.02 0.09 15 28 H 0.21 1.92 8.06 -2.91 -0.02 1.90 15 Total: -1.00 -77.09 248.70 1.62 -75.47 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.39 Total: 10.78 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 5.31 Total: 18.61 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -5.69 Total: -123.19 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.06 Total: -28.61 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.67 Total: 46.95 kcal Total: -77.09 1.62 -75.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743324965.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.921 kcal (2) G-P(sol) polarization free energy of solvation -77.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds