Wall clock time and date at job start Sun Mar 29 2020 22:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47493 * 2 1 4 4 C 1.36832 * 119.99758 * 264.56054 * 3 2 1 5 5 H 1.07998 * 119.99912 * 141.02659 * 4 3 2 6 6 C 1.38758 * 119.99961 * 321.01806 * 4 3 2 7 7 N 1.31610 * 120.00328 * 340.53552 * 6 4 3 8 8 Si 1.86800 * 119.99574 * 160.53072 * 6 4 3 9 9 H 1.48504 * 109.47027 * 60.00582 * 8 6 4 10 10 H 1.48506 * 109.47137 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47334 * 300.00257 * 8 6 4 12 12 C 1.39402 * 120.00117 * 84.56194 * 3 2 1 13 13 C 1.39089 * 120.03101 * 359.72312 * 12 3 2 14 14 C 1.38007 * 119.95858 * 179.72018 * 13 12 3 15 15 C 1.38795 * 120.03582 * 0.56160 * 14 13 12 16 16 O 1.35942 * 119.96218 * 179.69931 * 15 14 13 17 17 C 1.42901 * 117.00416 * 0.02562 * 16 15 14 18 18 C 1.38792 * 120.06724 * 359.71383 * 15 14 13 19 19 C 1.37994 * 120.03654 * 0.02562 * 18 15 14 20 20 H 1.09002 * 109.47337 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47226 * 300.00519 * 1 2 3 22 22 H 1.09005 * 109.46560 * 60.00117 * 1 2 3 23 23 H 1.09005 * 109.47081 * 119.99956 * 2 1 3 24 24 H 1.09000 * 109.47652 * 239.99584 * 2 1 3 25 25 H 0.97003 * 120.00581 * 179.97438 * 7 6 4 26 26 H 1.07996 * 120.01704 * 0.02562 * 13 12 3 27 27 H 1.07995 * 119.97668 * 180.27649 * 14 13 12 28 28 H 1.08996 * 109.47276 * 59.99628 * 17 16 15 29 29 H 1.09000 * 109.47159 * 180.02562 * 17 16 15 30 30 H 1.09005 * 109.46604 * 299.99685 * 17 16 15 31 31 H 1.08007 * 119.97812 * 179.97438 * 18 15 14 32 32 H 1.08003 * 120.02029 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3524 1.9887 -1.1797 5 1 2.1095 3.0289 -1.3391 6 6 3.0032 1.2684 -2.1711 7 7 3.6355 0.1546 -1.8679 8 14 2.9819 1.8795 -3.9362 9 1 3.6067 3.2251 -4.0017 10 1 3.7433 0.9374 -4.7954 11 1 1.5786 1.9614 -4.4148 12 6 2.1429 2.0765 1.2018 13 6 1.7982 1.4615 2.4008 14 6 1.9275 2.1492 3.5902 15 6 2.3902 3.4578 3.5894 16 8 2.5113 4.1359 4.7613 17 6 2.1449 3.4400 5.9545 18 6 2.7292 4.0747 2.3932 19 6 2.6061 3.3879 1.2026 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5139 -0.8901 23 1 1.8933 -0.5138 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 4.0902 -0.3492 -2.5610 26 1 1.4342 0.4447 2.4013 27 1 1.6642 1.6705 4.5218 28 1 2.7687 2.5528 6.0637 29 1 2.2883 4.0936 6.8149 30 1 1.0979 3.1429 5.8948 31 1 3.0887 5.0932 2.3941 32 1 2.8696 3.8683 0.2719 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746109700.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:48 Heat of formation + Delta-G solvation = -2.586843 kcal Electronic energy + Delta-G solvation = -14936.043636 eV Core-core repulsion = 12476.296691 eV Total energy + Delta-G solvation = -2459.746945 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.18582 -37.53865 -35.01973 -32.03729 -30.45397 -29.80043 -27.68864 -26.54477 -24.37737 -22.39471 -21.11787 -19.97249 -17.41198 -17.22648 -15.72353 -15.19766 -15.05996 -14.73658 -13.94359 -13.73709 -12.98412 -12.90484 -12.39602 -12.15848 -12.08627 -11.72003 -11.61049 -11.14631 -11.03890 -10.96074 -10.63041 -10.46278 -10.32157 -10.03095 -9.62513 -9.02581 -8.16879 -8.03153 -6.50503 -6.00803 -3.85347 2.35890 2.67035 3.18674 3.21591 3.23835 4.05827 4.12047 4.74377 4.99085 5.10405 5.44387 5.51797 5.65393 5.79321 5.81679 6.03251 6.25098 6.31067 6.34838 6.42620 6.60220 6.70171 6.90300 6.95548 7.14789 7.27831 7.36035 7.46877 7.54757 7.72511 8.12988 8.34394 8.73862 9.35043 9.76445 10.68740 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041035 B = 0.007744 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.182986 B = 3615.014903 C = 4045.406969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.116 3.884 3 N -0.449 5.449 4 C -0.311 4.311 5 H 0.084 0.916 6 C 0.034 3.966 7 N -0.867 5.867 8 Si 0.916 3.084 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.201 3.799 13 C -0.206 4.206 14 C -0.146 4.146 15 C 0.001 3.999 16 O -0.332 6.332 17 C 0.036 3.964 18 C -0.093 4.093 19 C -0.173 4.173 20 H 0.046 0.954 21 H 0.045 0.955 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.101 0.899 25 H 0.268 0.732 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.111 0.889 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.564 1.430 6.734 7.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.009 4.009 3 N -0.139 5.139 4 C -0.439 4.439 5 H 0.102 0.898 6 C -0.171 4.171 7 N -0.504 5.504 8 Si 0.743 3.257 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.200 1.200 12 C 0.088 3.912 13 C -0.230 4.230 14 C -0.165 4.165 15 C -0.045 4.045 16 O -0.247 6.247 17 C -0.060 4.060 18 C -0.113 4.113 19 C -0.197 4.197 20 H 0.065 0.935 21 H 0.064 0.936 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.119 0.881 25 H 0.078 0.922 26 H 0.128 0.872 27 H 0.125 0.875 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.129 0.871 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.396 1.299 6.378 7.342 hybrid contribution -0.045 -0.147 -0.720 0.736 sum -3.441 1.152 5.658 6.721 Atomic orbital electron populations 1.22214 0.98658 0.99976 1.01527 1.21340 0.91321 0.85139 1.03060 1.42327 1.58726 1.10904 1.01977 1.19244 1.35945 0.97635 0.91121 0.89814 1.25404 0.94313 0.96869 1.00478 1.70014 1.29991 1.16646 1.33700 0.86168 0.78429 0.78763 0.82363 1.19750 1.20975 1.19960 1.18201 0.94212 0.92285 0.86539 1.20261 1.11674 0.99949 0.91091 1.20674 1.04232 0.93957 0.97678 1.18455 1.08663 0.92247 0.85135 1.85927 1.84388 1.41277 1.13101 1.22759 0.99324 0.97560 0.86308 1.19995 1.02330 0.99171 0.89771 1.20399 1.07842 0.94378 0.97080 0.93502 0.93588 0.92763 0.93644 0.88092 0.92220 0.87181 0.87479 0.93703 0.89698 0.93758 0.87066 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 10.11 37.16 0.38 -2.80 16 2 C 0.12 2.62 5.29 -4.04 -0.02 2.60 16 3 N -0.45 -11.17 2.63 -113.12 -0.30 -11.46 16 4 C -0.31 -8.09 8.42 -15.13 -0.13 -8.22 16 5 H 0.08 2.14 6.90 -52.49 -0.36 1.78 16 6 C 0.03 0.88 4.93 -17.45 -0.09 0.79 16 7 N -0.87 -23.28 11.53 55.49 0.64 -22.64 16 8 Si 0.92 19.92 29.60 -169.99 -5.03 14.89 16 9 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 12 C 0.20 4.75 6.50 -83.79 -0.54 4.20 16 13 C -0.21 -4.38 8.79 -39.35 -0.35 -4.73 16 14 C -0.15 -2.84 9.03 -39.46 -0.36 -3.20 16 15 C 0.00 0.01 6.69 -39.17 -0.26 -0.25 16 16 O -0.33 -6.01 10.50 -19.56 -0.21 -6.22 16 17 C 0.04 0.48 9.81 101.05 0.99 1.47 16 18 C -0.09 -1.93 9.98 -39.47 -0.39 -2.32 16 19 C -0.17 -3.93 9.26 -39.36 -0.36 -4.29 16 20 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 21 H 0.04 0.86 7.60 -51.93 -0.39 0.46 16 22 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.05 0.99 6.51 -51.93 -0.34 0.65 16 24 H 0.10 2.50 5.63 -51.93 -0.29 2.20 16 25 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 26 H 0.11 2.21 6.05 -52.49 -0.32 1.89 16 27 H 0.11 1.77 6.29 -52.49 -0.33 1.44 16 28 H 0.04 0.56 7.66 -51.93 -0.40 0.17 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.55 7.66 -51.93 -0.40 0.15 16 31 H 0.11 2.06 8.06 -52.48 -0.42 1.64 16 32 H 0.13 2.84 6.48 -52.48 -0.34 2.50 16 LS Contribution 265.94 15.07 4.01 4.01 Total: -1.00 -28.04 265.94 -6.02 -34.05 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.00 Total: 4.11 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -1.13 Total: -16.74 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.34 Total: -34.11 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.21 Total: -6.22 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.04 -6.02 -34.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746109700.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.465 kcal (2) G-P(sol) polarization free energy of solvation -28.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds