Wall clock time and date at job start Sun Mar 29 2020 22:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47493 * 2 1 4 4 C 1.36832 * 119.99758 * 264.56054 * 3 2 1 5 5 H 1.07998 * 119.99912 * 141.02659 * 4 3 2 6 6 C 1.38758 * 119.99961 * 321.01806 * 4 3 2 7 7 N 1.31610 * 120.00328 * 340.53552 * 6 4 3 8 8 Si 1.86800 * 119.99574 * 160.53072 * 6 4 3 9 9 H 1.48504 * 109.47027 * 60.00582 * 8 6 4 10 10 H 1.48506 * 109.47137 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47334 * 300.00257 * 8 6 4 12 12 C 1.39402 * 120.00117 * 84.56194 * 3 2 1 13 13 C 1.39089 * 120.03101 * 359.72312 * 12 3 2 14 14 C 1.38007 * 119.95858 * 179.72018 * 13 12 3 15 15 C 1.38795 * 120.03582 * 0.56160 * 14 13 12 16 16 O 1.35942 * 119.96218 * 179.69931 * 15 14 13 17 17 C 1.42901 * 117.00416 * 0.02562 * 16 15 14 18 18 C 1.38792 * 120.06724 * 359.71383 * 15 14 13 19 19 C 1.37994 * 120.03654 * 0.02562 * 18 15 14 20 20 H 1.09002 * 109.47337 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47226 * 300.00519 * 1 2 3 22 22 H 1.09005 * 109.46560 * 60.00117 * 1 2 3 23 23 H 1.09005 * 109.47081 * 119.99956 * 2 1 3 24 24 H 1.09000 * 109.47652 * 239.99584 * 2 1 3 25 25 H 0.97003 * 120.00581 * 179.97438 * 7 6 4 26 26 H 1.07996 * 120.01704 * 0.02562 * 13 12 3 27 27 H 1.07995 * 119.97668 * 180.27649 * 14 13 12 28 28 H 1.08996 * 109.47276 * 59.99628 * 17 16 15 29 29 H 1.09000 * 109.47159 * 180.02562 * 17 16 15 30 30 H 1.09005 * 109.46604 * 299.99685 * 17 16 15 31 31 H 1.08007 * 119.97812 * 179.97438 * 18 15 14 32 32 H 1.08003 * 120.02029 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3524 1.9887 -1.1797 5 1 2.1095 3.0289 -1.3391 6 6 3.0032 1.2684 -2.1711 7 7 3.6355 0.1546 -1.8679 8 14 2.9819 1.8795 -3.9362 9 1 3.6067 3.2251 -4.0017 10 1 3.7433 0.9374 -4.7954 11 1 1.5786 1.9614 -4.4148 12 6 2.1429 2.0765 1.2018 13 6 1.7982 1.4615 2.4008 14 6 1.9275 2.1492 3.5902 15 6 2.3902 3.4578 3.5894 16 8 2.5113 4.1359 4.7613 17 6 2.1449 3.4400 5.9545 18 6 2.7292 4.0747 2.3932 19 6 2.6061 3.3879 1.2026 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5139 -0.8901 23 1 1.8933 -0.5138 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 4.0902 -0.3492 -2.5610 26 1 1.4342 0.4447 2.4013 27 1 1.6642 1.6705 4.5218 28 1 2.7687 2.5528 6.0637 29 1 2.2883 4.0936 6.8149 30 1 1.0979 3.1429 5.8948 31 1 3.0887 5.0932 2.3941 32 1 2.8696 3.8683 0.2719 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746109700.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:47 Heat of formation + Delta-G solvation = -17.997707 kcal Electronic energy + Delta-G solvation = -14936.711901 eV Core-core repulsion = 12476.296691 eV Total energy + Delta-G solvation = -2460.415210 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.75680 -39.13626 -36.68043 -33.89636 -32.13341 -31.40164 -29.27082 -27.92541 -26.12970 -24.06893 -22.74197 -21.67831 -19.04206 -18.91569 -17.49665 -16.78137 -16.46425 -16.32090 -15.53054 -15.42326 -14.68960 -14.46648 -14.02594 -13.76258 -13.70900 -13.22546 -13.18317 -12.77039 -12.65803 -12.54228 -12.27021 -12.11857 -11.91687 -11.68657 -11.26557 -10.84263 -9.90941 -9.68447 -8.39559 -7.79284 -5.79798 0.69428 1.00475 1.43540 1.47305 1.52954 2.31924 2.74346 2.92670 3.27393 3.30838 4.14414 4.20111 4.35687 4.50593 4.52756 4.66258 4.70387 4.75226 4.79105 4.84749 4.95805 5.07292 5.25618 5.31739 5.42996 5.51922 5.59876 5.71109 5.84732 6.06017 6.26792 6.81550 6.88458 7.52533 7.90283 8.77819 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041035 B = 0.007744 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.182986 B = 3615.014903 C = 4045.406969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.117 3.883 3 N -0.473 5.473 4 C -0.325 4.325 5 H 0.076 0.924 6 C -0.009 4.009 7 N -0.901 5.901 8 Si 0.979 3.021 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.173 3.827 13 C -0.206 4.206 14 C -0.143 4.143 15 C 0.011 3.989 16 O -0.344 6.344 17 C 0.024 3.976 18 C -0.101 4.101 19 C -0.191 4.191 20 H 0.076 0.924 21 H 0.050 0.950 22 H 0.041 0.959 23 H 0.047 0.953 24 H 0.076 0.924 25 H 0.267 0.733 26 H 0.121 0.879 27 H 0.143 0.857 28 H 0.053 0.947 29 H 0.116 0.884 30 H 0.056 0.944 31 H 0.129 0.871 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.252 1.722 8.345 9.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.007 4.007 3 N -0.166 5.166 4 C -0.453 4.453 5 H 0.094 0.906 6 C -0.210 4.210 7 N -0.539 5.539 8 Si 0.803 3.197 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.194 1.194 12 C 0.062 3.938 13 C -0.230 4.230 14 C -0.162 4.162 15 C -0.035 4.035 16 O -0.259 6.259 17 C -0.070 4.070 18 C -0.120 4.120 19 C -0.215 4.215 20 H 0.094 0.906 21 H 0.069 0.931 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.139 0.861 27 H 0.160 0.840 28 H 0.072 0.928 29 H 0.135 0.865 30 H 0.074 0.926 31 H 0.147 0.853 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.096 1.610 8.035 9.161 hybrid contribution 0.172 -0.158 -0.942 0.971 sum -3.923 1.452 7.093 8.235 Atomic orbital electron populations 1.22075 0.96130 1.01732 1.01046 1.21306 0.93336 0.84233 1.01834 1.42445 1.60549 1.11600 1.02010 1.19396 1.36040 0.97664 0.92235 0.90620 1.26148 0.93896 0.97097 1.03886 1.70117 1.31220 1.17892 1.34626 0.85202 0.78476 0.78162 0.77824 1.19443 1.20756 1.19409 1.18564 0.95257 0.92783 0.87178 1.20472 1.11101 1.00535 0.90929 1.21013 1.03053 0.93746 0.98400 1.18605 1.06717 0.92336 0.85879 1.85927 1.84320 1.42076 1.13603 1.23152 1.00171 0.98629 0.85091 1.20191 1.02221 1.00010 0.89624 1.20429 1.08934 0.94609 0.97525 0.90561 0.93140 0.94016 0.93486 0.90584 0.92330 0.86139 0.83988 0.92806 0.86547 0.92569 0.85327 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.71 10.11 71.98 0.73 -4.98 16 2 C 0.12 5.36 5.29 86.38 0.46 5.81 16 3 N -0.47 -24.00 2.63 -511.79 -1.35 -25.35 16 4 C -0.32 -17.38 8.42 84.04 0.71 -16.67 16 5 H 0.08 4.03 6.90 -2.91 -0.02 4.01 16 6 C -0.01 -0.47 4.93 84.85 0.42 -0.06 16 7 N -0.90 -49.64 11.53 21.64 0.25 -49.39 16 8 Si 0.98 41.63 29.60 68.60 2.03 43.66 16 9 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 10 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 12 C 0.17 8.23 6.50 38.34 0.25 8.48 16 13 C -0.21 -8.53 8.79 22.42 0.20 -8.33 16 14 C -0.14 -5.18 9.03 22.35 0.20 -4.98 16 15 C 0.01 0.41 6.69 22.54 0.15 0.56 16 16 O -0.34 -11.35 10.50 -92.90 -0.98 -12.32 16 17 C 0.02 0.54 9.81 113.37 1.11 1.65 16 18 C -0.10 -4.09 9.98 22.34 0.22 -3.87 16 19 C -0.19 -8.77 9.26 22.41 0.21 -8.57 16 20 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 21 H 0.05 1.83 7.60 -2.39 -0.02 1.81 16 22 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 23 H 0.05 2.06 6.51 -2.38 -0.02 2.05 16 24 H 0.08 3.87 5.63 -2.39 -0.01 3.85 16 25 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 26 H 0.12 4.65 6.05 -2.91 -0.02 4.63 16 27 H 0.14 4.09 6.29 -2.91 -0.02 4.08 16 28 H 0.05 1.12 7.66 -2.39 -0.02 1.11 16 29 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 1.14 7.66 -2.38 -0.02 1.12 16 31 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 32 H 0.11 5.29 6.48 -2.91 -0.02 5.28 16 Total: -1.00 -60.47 265.94 5.72 -54.75 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 1.11 Total: 19.60 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: 4.65 Total: -30.95 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -1.10 Total: -74.74 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.98 Total: -12.32 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -60.47 5.72 -54.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746109700.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.748 kcal (2) G-P(sol) polarization free energy of solvation -60.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds