Wall clock time and date at job start Sun Mar 29 2020 21:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48507 * 109.47190 * 270.00345 * 3 2 1 5 5 H 1.48503 * 109.46817 * 29.99896 * 3 2 1 6 6 H 1.48493 * 109.47240 * 149.99987 * 3 2 1 7 7 C 1.39072 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00144 * 180.02562 * 7 2 1 9 9 N 1.36824 * 120.00007 * 359.97438 * 7 2 1 10 10 C 1.34769 * 119.99712 * 180.27625 * 9 7 2 11 11 O 1.21660 * 120.00813 * 359.73603 * 10 9 7 12 12 C 1.46961 * 119.99619 * 179.72510 * 10 9 7 13 13 C 1.33123 * 119.99682 * 186.00167 * 12 10 9 14 14 C 1.50703 * 119.99632 * 187.63739 * 13 12 10 15 15 C 1.53004 * 117.49759 * 177.98238 * 14 13 12 16 16 C 1.53004 * 60.00022 * 252.51115 * 15 14 13 17 17 C 1.50697 * 120.00158 * 7.64071 * 13 12 10 18 18 C 1.53007 * 117.49673 * 129.83881 * 17 13 12 19 19 C 1.53001 * 117.49700 * 61.21889 * 17 13 12 20 20 H 0.97001 * 120.00246 * 359.97438 * 1 2 3 21 21 H 0.96993 * 119.99660 * 0.02562 * 9 7 2 22 22 H 1.07999 * 119.99913 * 6.00840 * 12 10 9 23 23 H 1.09001 * 115.54906 * 323.69244 * 14 13 12 24 24 H 1.08993 * 117.49811 * 0.02562 * 15 14 13 25 25 H 1.09000 * 117.49590 * 145.02199 * 15 14 13 26 26 H 1.09000 * 117.49743 * 252.51450 * 16 15 14 27 27 H 1.08996 * 117.49491 * 107.48674 * 16 15 14 28 28 H 1.08998 * 115.55191 * 275.54428 * 17 13 12 29 29 H 1.09002 * 117.49630 * 359.97438 * 18 17 13 30 30 H 1.08999 * 117.49666 * 145.01912 * 18 17 13 31 31 H 1.08999 * 117.49614 * 214.97344 * 19 17 13 32 32 H 1.08995 * 117.50380 * 359.97438 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4950 2.0465 -1.4001 5 1 1.4449 2.6527 0.7000 6 1 3.5450 1.4401 0.7000 7 6 2.0088 -1.2044 -0.0005 8 1 3.0888 -1.2044 -0.0001 9 7 1.3247 -2.3893 -0.0005 10 6 1.9986 -3.5564 0.0046 11 8 3.2152 -3.5565 0.0043 12 6 1.2638 -4.8291 0.0107 13 6 1.9241 -5.9782 0.1362 14 6 1.1962 -7.2874 -0.0294 15 6 2.0196 -8.5723 0.0800 16 6 1.4995 -8.1107 -1.2829 17 6 3.3992 -5.9700 0.4441 18 6 3.8845 -6.8463 1.6007 19 6 3.8429 -5.3250 1.7587 20 1 -0.4850 0.8400 0.0004 21 1 0.3548 -2.3893 -0.0005 22 1 0.1882 -4.8321 -0.0868 23 1 0.1754 -7.3093 0.3524 24 1 3.0877 -8.4707 0.2721 25 1 1.5407 -9.4399 0.5339 26 1 0.6784 -8.6745 -1.7255 27 1 2.2255 -7.7054 -1.9876 28 1 4.0586 -5.8622 -0.4171 29 1 3.1366 -7.4284 2.1391 30 1 4.8632 -7.3154 1.5004 31 1 4.7944 -4.7933 1.7624 32 1 3.0680 -4.9063 2.4007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749604129.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:09 Heat of formation + Delta-G solvation = 10.422997 kcal Electronic energy + Delta-G solvation = -14724.357696 eV Core-core repulsion = 12265.174900 eV Total energy + Delta-G solvation = -2459.182796 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.61182 -39.04652 -36.77026 -35.84634 -33.33785 -32.73840 -27.51956 -24.98506 -23.70161 -23.43085 -22.58793 -21.20431 -20.09692 -18.82601 -17.76302 -16.68171 -16.65419 -16.17641 -15.54154 -15.20594 -15.16663 -14.76679 -13.91005 -13.62136 -13.24859 -12.97732 -12.49529 -12.42763 -12.35929 -12.25978 -12.12609 -11.62366 -11.54194 -11.18962 -11.16950 -11.03196 -10.04063 -9.89309 -9.71037 -8.48641 -5.92318 0.55552 1.39666 1.41643 1.53245 2.29284 2.51468 3.01019 3.04438 3.31607 3.35747 3.76113 3.90283 4.06154 4.20437 4.22833 4.32745 4.44154 4.59468 4.61722 4.80668 4.87765 5.03595 5.12352 5.23741 5.31127 5.33277 5.38366 5.40070 5.55288 5.64426 6.06027 6.62072 7.13012 7.59061 8.16820 8.69478 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047756 B = 0.006581 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.174467 B = 4253.900932 C = 4645.694767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.016 4.016 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.329 4.329 8 H 0.081 0.919 9 N -0.570 5.570 10 C 0.464 3.536 11 O -0.614 6.614 12 C -0.211 4.211 13 C 0.005 3.995 14 C -0.139 4.139 15 C -0.161 4.161 16 C -0.163 4.163 17 C -0.104 4.104 18 C -0.151 4.151 19 C -0.157 4.157 20 H 0.278 0.722 21 H 0.393 0.607 22 H 0.133 0.867 23 H 0.125 0.875 24 H 0.104 0.896 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.770 -14.794 1.003 14.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.216 4.216 3 Si 0.819 3.181 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.459 4.459 8 H 0.099 0.901 9 N -0.205 5.205 10 C 0.255 3.745 11 O -0.502 6.502 12 C -0.231 4.231 13 C 0.002 3.998 14 C -0.157 4.157 15 C -0.198 4.198 16 C -0.200 4.200 17 C -0.122 4.122 18 C -0.188 4.188 19 C -0.194 4.194 20 H 0.088 0.912 21 H 0.227 0.773 22 H 0.151 0.849 23 H 0.143 0.857 24 H 0.123 0.877 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.092 0.908 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.423 -14.598 1.004 14.702 hybrid contribution -0.295 1.474 -0.130 1.508 sum 1.128 -13.125 0.874 13.202 Atomic orbital electron populations 1.69657 1.07025 1.29377 1.50091 1.26116 0.96540 1.02579 0.96355 0.84892 0.77861 0.76665 0.78691 1.19562 1.19446 1.19691 1.19697 0.92806 0.84080 1.49324 0.90118 1.41888 1.09173 1.04922 1.64521 1.18764 0.87775 0.84858 0.83143 1.90582 1.14727 1.87851 1.57012 1.22443 1.00145 0.91821 1.08736 1.21172 0.93191 0.93096 0.92342 1.21126 1.00077 0.88786 1.05678 1.23269 1.00920 0.96180 0.99386 1.23034 1.03970 1.02096 0.90907 1.20588 0.92970 1.05499 0.93128 1.23315 1.03215 0.92193 1.00082 1.22508 1.01486 0.95812 0.99595 0.91234 0.77340 0.84933 0.85676 0.87745 0.86358 0.86453 0.89888 0.89091 0.87192 0.87054 0.90767 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.33 13.05 21.68 0.28 -51.05 16 2 C -0.02 -0.89 5.50 84.97 0.47 -0.43 16 3 Si 1.00 43.94 29.55 68.60 2.03 45.97 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.33 -19.36 9.68 84.11 0.81 -18.54 16 8 H 0.08 5.01 7.15 -2.91 -0.02 4.98 16 9 N -0.57 -31.09 5.27 -310.42 -1.64 -32.73 16 10 C 0.46 23.59 7.39 86.53 0.64 24.23 16 11 O -0.61 -34.14 12.30 -4.22 -0.05 -34.19 16 12 C -0.21 -8.34 9.62 23.41 0.23 -8.11 16 13 C 0.00 0.16 5.31 -17.60 -0.09 0.07 16 14 C -0.14 -3.32 5.98 -11.54 -0.07 -3.39 16 15 C -0.16 -2.96 8.96 30.60 0.27 -2.68 16 16 C -0.16 -3.30 10.23 30.60 0.31 -2.98 16 17 C -0.10 -3.60 3.47 -11.54 -0.04 -3.64 16 18 C -0.15 -3.97 7.84 30.60 0.24 -3.73 16 19 C -0.16 -5.74 7.99 30.60 0.24 -5.50 16 20 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 21 H 0.39 20.69 7.88 -92.71 -0.73 19.96 16 22 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 23 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 24 H 0.10 2.00 5.48 -2.39 -0.01 1.98 16 25 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.09 3.47 8.07 -2.39 -0.02 3.45 16 29 H 0.11 2.48 7.42 -2.39 -0.02 2.46 16 30 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -66.62 272.82 4.03 -62.59 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: 0.39 Total: 34.11 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 3.02 Total: -24.71 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -1.35 Total: -83.77 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.05 Total: -34.19 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -66.62 4.03 -62.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749604129.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.017 kcal (2) G-P(sol) polarization free energy of solvation -66.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds