Wall clock time and date at job start Sun Mar 29 2020 21:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31352 * 1 3 3 Si 1.86796 * 119.99767 * 2 1 4 4 H 1.48499 * 109.47177 * 239.99924 * 3 2 1 5 5 H 1.48499 * 109.47621 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47200 * 120.00609 * 3 2 1 7 7 C 1.39069 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99726 * 199.82713 * 7 2 1 9 9 N 1.36823 * 120.00331 * 19.82313 * 7 2 1 10 10 C 1.34779 * 119.99702 * 42.76879 * 9 7 2 11 11 O 1.21664 * 120.00088 * 359.97438 * 10 9 7 12 12 C 1.46948 * 120.00185 * 180.02562 * 10 9 7 13 13 C 1.33119 * 120.00126 * 179.97438 * 12 10 9 14 14 C 1.51581 * 135.77966 * 180.02562 * 13 12 10 15 15 C 1.53846 * 86.75368 * 205.17347 * 14 13 12 16 16 C 1.51580 * 135.78502 * 0.02817 * 13 12 10 17 17 C 1.46496 * 120.00394 * 222.76988 * 9 7 2 18 18 C 1.53004 * 117.49821 * 3.21340 * 17 9 7 19 19 C 1.53000 * 117.49763 * 294.55538 * 17 9 7 20 20 H 0.96997 * 119.99923 * 354.92917 * 1 2 3 21 21 H 1.08003 * 119.99541 * 0.02562 * 12 10 9 22 22 H 1.09005 * 113.66936 * 90.70901 * 14 13 12 23 23 H 1.08997 * 113.66723 * 319.63756 * 14 13 12 24 24 H 1.08994 * 113.65794 * 89.68993 * 15 14 13 25 25 H 1.09004 * 113.65325 * 220.72975 * 15 14 13 26 26 H 1.09005 * 113.66210 * 40.35782 * 16 13 12 27 27 H 1.09001 * 113.66860 * 269.29426 * 16 13 12 28 28 H 1.08994 * 115.55148 * 148.88135 * 17 9 7 29 29 H 1.09000 * 117.49480 * 0.02562 * 18 17 9 30 30 H 1.08996 * 117.49771 * 145.01666 * 18 17 9 31 31 H 1.08996 * 117.50146 * 214.97956 * 19 17 9 32 32 H 1.09000 * 117.49578 * 359.97438 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 3.1012 1.6964 -1.2125 5 1 1.2825 2.7465 0.0006 6 1 3.1013 1.6964 1.2124 7 6 2.0088 -1.2044 -0.0005 8 1 3.0408 -1.2322 0.3167 9 7 1.3856 -2.3540 -0.4029 10 6 0.5913 -2.3444 -1.4917 11 8 0.4282 -1.3132 -2.1165 12 6 -0.0786 -3.5789 -1.9236 13 6 -0.8635 -3.5692 -2.9987 14 6 -1.7009 -4.5912 -3.7416 15 6 -1.5254 -3.7021 -4.9848 16 6 -1.3071 -2.5315 -4.0106 17 6 1.5815 -3.5955 0.3498 18 6 2.4336 -3.5254 1.6187 19 6 2.9868 -4.2004 0.3611 20 1 -0.4850 0.8367 0.0742 21 1 0.0653 -4.4939 -1.3682 22 1 -2.7307 -4.6524 -3.3894 23 1 -1.2234 -5.5669 -3.8305 24 1 -0.6445 -3.9483 -5.5777 25 1 -2.4296 -3.6077 -5.5862 26 1 -0.5126 -1.8504 -4.3158 27 1 -2.2263 -2.0153 -3.7338 28 1 0.7370 -4.2845 0.3482 29 1 2.8480 -2.5554 1.8936 30 1 2.1498 -4.1685 2.4516 31 1 3.0668 -5.2874 0.3673 32 1 3.7654 -3.6749 -0.1918 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755236587.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:03 Heat of formation + Delta-G solvation = 47.293858 kcal Electronic energy + Delta-G solvation = -15123.904375 eV Core-core repulsion = 12666.320420 eV Total energy + Delta-G solvation = -2457.583956 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.74855 -37.70883 -35.80995 -32.76605 -30.99134 -29.67887 -25.35029 -25.13586 -22.53095 -21.64867 -21.09689 -19.67040 -17.34418 -16.30475 -15.98778 -15.03369 -14.88891 -14.40135 -14.01811 -13.40977 -13.10786 -12.71759 -12.05327 -11.88642 -11.42957 -11.30689 -10.93322 -10.85952 -10.81307 -10.60300 -10.42661 -10.20305 -9.92945 -9.89683 -9.68252 -8.66788 -8.28484 -7.87724 -6.95811 -6.07223 -3.78343 2.37524 3.33153 3.39863 3.43761 4.29283 4.51339 4.77331 4.95724 5.01004 5.10716 5.30151 5.40967 5.50523 5.62908 5.78869 5.83159 5.93831 6.02864 6.07853 6.09166 6.25903 6.37465 6.49506 6.64006 6.68070 6.78084 6.94862 7.01894 7.40816 7.65635 8.32822 9.11602 9.26821 9.72720 10.41186 11.01317 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024365 B = 0.010863 C = 0.008016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.895140 B = 2576.985853 C = 3492.098604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.349 4.349 8 H 0.077 0.923 9 N -0.421 5.421 10 C 0.508 3.492 11 O -0.533 6.533 12 C -0.160 4.160 13 C -0.112 4.112 14 C -0.105 4.105 15 C -0.142 4.142 16 C -0.092 4.092 17 C 0.076 3.924 18 C -0.175 4.175 19 C -0.208 4.208 20 H 0.264 0.736 21 H 0.114 0.886 22 H 0.089 0.911 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.923 -8.572 -2.760 9.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.476 4.476 8 H 0.095 0.905 9 N -0.141 5.141 10 C 0.298 3.702 11 O -0.412 6.412 12 C -0.182 4.182 13 C -0.114 4.114 14 C -0.142 4.142 15 C -0.180 4.180 16 C -0.129 4.129 17 C -0.030 4.030 18 C -0.213 4.213 19 C -0.247 4.247 20 H 0.074 0.926 21 H 0.132 0.868 22 H 0.107 0.893 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.190 -7.881 -3.147 8.569 hybrid contribution 0.389 0.613 0.285 0.780 sum -0.800 -7.268 -2.862 7.852 Atomic orbital electron populations 1.69814 1.06653 1.27498 1.41947 1.25229 0.94749 0.99338 0.94396 0.86275 0.79323 0.81964 0.78440 1.19961 1.21213 1.20420 1.18801 0.95273 0.84370 1.49148 0.90497 1.42671 1.43982 1.05947 1.21515 1.17782 0.83310 0.87584 0.81503 1.90594 1.62658 1.33092 1.54841 1.22146 1.00834 0.99038 0.96137 1.23173 0.96286 0.97694 0.94248 1.22254 0.99427 0.96989 0.95489 1.22825 1.01362 0.97835 0.95953 1.22074 1.01670 0.95829 0.93324 1.21695 0.92486 0.91337 0.97472 1.23086 1.04653 1.02579 0.90993 1.23322 0.99837 0.98656 1.02899 0.92550 0.86806 0.89304 0.91358 0.90380 0.91546 0.89904 0.89552 0.87895 0.87533 0.89816 0.89828 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.00 11.71 55.50 0.65 -24.35 16 2 C 0.07 2.13 4.32 -17.45 -0.08 2.05 16 3 Si 0.91 22.33 29.60 -169.99 -5.03 17.30 16 4 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.35 -9.77 7.98 -15.02 -0.12 -9.89 16 8 H 0.08 2.07 7.19 -52.49 -0.38 1.69 16 9 N -0.42 -10.97 2.84 -109.11 -0.31 -11.28 16 10 C 0.51 13.57 6.92 -12.73 -0.09 13.49 16 11 O -0.53 -16.06 12.77 5.22 0.07 -16.00 16 12 C -0.16 -3.44 9.29 -37.84 -0.35 -3.80 16 13 C -0.11 -2.14 6.88 -100.35 -0.69 -2.83 16 14 C -0.10 -1.50 8.05 -27.01 -0.22 -1.71 16 15 C -0.14 -2.01 8.11 -25.93 -0.21 -2.22 16 16 C -0.09 -1.70 7.06 -27.01 -0.19 -1.89 16 17 C 0.08 1.59 5.75 -67.93 -0.39 1.20 16 18 C -0.18 -3.25 9.80 -26.69 -0.26 -3.51 16 19 C -0.21 -3.68 10.36 -26.69 -0.28 -3.95 16 20 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 21 H 0.11 2.10 6.30 -52.48 -0.33 1.77 16 22 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 1.73 7.48 -51.93 -0.39 1.34 16 27 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 28 H 0.10 1.93 6.57 -51.93 -0.34 1.59 16 29 H 0.11 2.18 6.69 -51.93 -0.35 1.83 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 270.45 15.07 4.08 4.08 Total: -1.00 -32.77 270.45 -7.72 -40.50 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.30 Total: 2.83 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -2.87 Total: -13.08 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.34 Total: -35.63 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.07 Total: -16.00 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.77 -7.72 -40.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755236587.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.789 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds